BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.22.C1
(1579 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01280.1 68414.m00044 cytochrome P450 family protein sim... 3059 0.0
At2g24180.1 68415.m02889 cytochrome P450 family protein 42 0.014
At5g06050.1 68418.m00670 dehydration-responsive protein-rel... 36 0.88
At5g65490.1 68418.m08236 expressed protein similar to unkno... 34 3.5
At5g05030.1 68418.m00534 expressed protein contains similar... 34 3.5
>At1g01280.1 68414.m00044 cytochrome P450 family protein similar to cytochrome
P450 GB:BAA92894 GI:7339658 from [ Petunia hybrida]
Length = 1602
Score = 3059 bits (1543), Expect = 0.0
Identities = 1574/1579 (99%), Gaps = 4/1579 (0%)
Strand = Plus / Plus
Query: 1 atgattttggtgctagcctccctcttcgctgttctcattcttaatgttcttctatggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28 atgattttggtgctagcctccctcttcgctgttctcattcttaatgttcttctatggaga 87
Query: 61 tggctcaaggcttcagcatgtaaagcccaaaggcttcctccaggtccaccaagattgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 tggctcaaggcttcagcatgtaaagcccaaaggcttcctccaggtccaccaagattgcct 147
Query: 121 attttgggtaaccttcttcaattggggcctttacctcatcgggacttggcttctctatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 attttgggtaaccttcttcaattggggcctttacctcatcgggacttggcttctctatgt 207
Query: 181 gataagtacggcccacttgtctacctccggcttggaaaatgtagatgctatcacaacgaa 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 208 gataagtacggcccacttgtctacctccggcttggaaa-tgtagatgctatcacaacgaa 266
Query: 241 cgatcccgataccatccgtgagattncttttgncggcaggaccgatgttttttaatcgag 300
||||||||||||||||||||||||| |||||| ||||||||| |||||||||| ||||||
Sbjct: 267 cgatcccgataccatccgtgagatt-cttttg-cggcaggac-gatgttttttcatcgag 323
Query: 301 acccaaaacactcgccgcagtccacctagcgtatggatgtggggacgttgcattagcgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acccaaaacactcgccgcagtccacctagcgtatggatgtggggacgttgcattagcgcc 383
Query: 361 aatgggcccgcattggaaaagaatgaggaggatatgcatggaacacctacttacaaccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatgggcccgcattggaaaagaatgaggaggatatgcatggaacacctacttacaaccaa 443
Query: 421 aaggcttgaatcttttacaacccaacgggctgaggaagctcggtatctaatacgagatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaggcttgaatcttttacaacccaacgggctgaggaagctcggtatctaatacgagatgt 503
Query: 481 cttcaaacggtccgaaaccggaaagccgataaatcttaaggaagtattgggtgctttctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttcaaacggtccgaaaccggaaagccgataaatcttaaggaagtattgggtgctttctc 563
Query: 541 tatgaacaatgtgactaggatgctactagggaaacaattctttgggcctggatctctagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatgaacaatgtgactaggatgctactagggaaacaattctttgggcctggatctctagt 623
Query: 601 tagcccaaaagaagcccaagagtttttgcacataactcacaaattgttttggctgttggg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tagcccaaaagaagcccaagagtttttgcacataactcacaaattgttttggctgttggg 683
Query: 661 tgtaatttacctaggagattacttgccattttggagatgggtggatccgtccggatgcga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgtaatttacctaggagattacttgccattttggagatgggtggatccgtccggatgcga 743
Query: 721 gaaagaaatgagggacgtggagaagcgtgttgacgagtttcacactaagatcatcgacga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaaagaaatgagggacgtggagaagcgtgttgacgagtttcacactaagatcatcgacga 803
Query: 781 gcacagaagggcaaaactggaagatgaagataaaaacggagacatggattttgttgacgt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gcacagaagggcaaaactggaagatgaagataaaaacggagacatggattttgttgacgt 863
Query: 841 tttgttgtctctacctggtgagaacgggaaggcacacatggaagacgttgaaattaaagc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tttgttgtctctacctggtgagaacgggaaggcacacatggaagacgttgaaattaaagc 923
Query: 901 tctaattcaggacatgatagctgctgcgacagatacgtcagcagtcacaaacgaatgggc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 tctaattcaggacatgatagctgctgcgacagatacgtcagcagtcacaaacgaatgggc 983
Query: 961 aatggctgaagcgatcaagcaaccgcgagtgatgcgtaaaattcaagaagaactcgataa 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 aatggctgaagcgatcaagcaaccgcgagtgatgcgtaaaattcaagaagaactcgataa 1043
Query: 1021 tgtcgtaggatcaaatcgaatggtcgacgaatcggatctagtccatttaaactatctacg 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 tgtcgtaggatcaaatcgaatggtcgacgaatcggatctagtccatttaaactatctacg 1103
Query: 1081 ttgtgtggtacgagagacgttccgaatgcatccagccggaccattcttgatccctcacga 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 ttgtgtggtacgagagacgttccgaatgcatccagccggaccattcttgatccctcacga 1163
Query: 1141 atccgtccgagcaacaacgatcaacggctactacatcccggcaaagacacgtgtcttcat 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 atccgtccgagcaacaacgatcaacggctactacatcccggcaaagacacgtgtcttcat 1223
Query: 1201 caatacacatggattgggccgaaacactaagatatgggacgacgtggaagacttcaggcc 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 caatacacatggattgggccgaaacactaagatatgggacgacgtggaagacttcaggcc 1283
Query: 1261 agaacgacactggcccgttgaaggtagcggacgcgttgagataagtcatggaccggattt 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 agaacgacactggcccgttgaaggtagcggacgcgttgagataagtcatggaccggattt 1343
Query: 1321 taagatattgccgtttagtgccggcaagaggaaatgtcccggagctccgttaggtgtgac 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 taagatattgccgtttagtgccggcaagaggaaatgtcccggagctccgttaggtgtgac 1403
Query: 1381 gatggtgctaatggctttggctcggctcttccattgctttgaatggtcttcaccgggaaa 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 gatggtgctaatggctttggctcggctcttccattgctttgaatggtcttcaccgggaaa 1463
Query: 1441 tattgatacggtggaagtttatggcatgactatgcctaaggctaaaccattacgggcaat 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 tattgatacggtggaagtttatggcatgactatgcctaaggctaaaccattacgggcaat 1523
Query: 1501 cgctaagccacgattggcagctcatttgtacacataactttggtttaaattgaataataa 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 cgctaagccacgattggcagctcatttgtacacataactttggtttaaattgaataataa 1583
Query: 1561 aagcatctacattggacat 1579
|||||||||||||||||||
Sbjct: 1584 aagcatctacattggacat 1602
>At2g24180.1 68415.m02889 cytochrome P450 family protein
Length = 1701
Score = 42.1 bits (21), Expect = 0.014
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 94 cttcctccaggtccaccaagattgcctat 122
||||| ||||||||||||||||| |||||
Sbjct: 149 cttccaccaggtccaccaagattacctat 177
>At5g06050.1 68418.m00670 dehydration-responsive protein-related similar to
early-responsive to dehydration stress ERD3 protein
[Arabidopsis thaliana] GI:15320410; contains Pfam profile
PF03141: Putative methyltransferase
Length = 2309
Score = 36.2 bits (18), Expect = 0.88
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1308 atggaccggattttaaga 1325
||||||||||||||||||
Sbjct: 1884 atggaccggattttaaga 1901
>At5g65490.1 68418.m08236 expressed protein similar to unknown protein (dbj
BAA75199.1)
Length = 2440
Score = 34.2 bits (17), Expect = 3.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 821 gacatggattttgttgacgtt 841
||||||||||||| |||||||
Sbjct: 1586 gacatggattttgatgacgtt 1606
>At5g05030.1 68418.m00534 expressed protein contains similarity to
carboxyl-terminal proteinase contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 1213
Score = 34.2 bits (17), Expect = 3.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 95 ttcctccaggtccacca 111
|||||||||||||||||
Sbjct: 1133 ttcctccaggtccacca 1117
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,420
Number of Sequences: 29161
Number of extensions: 38420
Number of successful extensions: 721
Number of sequences better than 10.0: 13
length of query: 1579
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1561
effective length of database: 43,533,334
effective search space: 67955534374
effective search space used: 67955534374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)