BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.21.C1
(2578 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) fami... 5111 0.0
At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) fami... 76 2e-12
At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) fami... 68 4e-10
At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) fami... 62 3e-08
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)... 60 1e-07
>At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family protein contains
Pfam profile: PF00010 helix-loop-helix DNA-binding domain
Length = 2578
Score = 5111 bits (2578), Expect = 0.0
Identities = 2578/2578 (100%)
Strand = Plus / Plus
Query: 1 gtttggtcttttaataaaaaagagcacgaagaacatgcgtcggactctctctcttccttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtttggtcttttaataaaaaagagcacgaagaacatgcgtcggactctctctcttccttg 60
Query: 61 aattcattcaattggccacggcgacaaaacagggagccgatacagcgaaactgatacatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattcattcaattggccacggcgacaaaacagggagccgatacagcgaaactgatacatc 120
Query: 121 tttttttattttctggattcttagggttctttttcggggaatttaggtaatttgtttgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttttttattttctggattcttagggttctttttcggggaatttaggtaatttgtttgtc 180
Query: 181 cattttggtggggtttgggagatttaaaatttgtgtttttttttgggtcggattctcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cattttggtggggtttgggagatttaaaatttgtgtttttttttgggtcggattctcaaa 240
Query: 241 aatctgattttgaggagaaaatctcggtggaagagacttgattcaaatcttctttactgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatctgattttgaggagaaaatctcggtggaagagacttgattcaaatcttctttactgg 300
Query: 301 taaaaatatattcttctcaattcctcattttctgttggtggagtttgatttttgtcattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaaaatatattcttctcaattcctcattttctgttggtggagtttgatttttgtcattt 360
Query: 361 aattgttgttaaagaaaataggggcaagatctgagatctctgggtgttccatgcaaaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattgttgttaaagaaaataggggcaagatctgagatctctgggtgttccatgcaaaact 420
Query: 421 gttatactccgccgtatatttgcatctgggtcacacttctaaaccctatcatttgactta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttatactccgccgtatatttgcatctgggtcacacttctaaaccctatcatttgactta 480
Query: 481 agaatcgatttctgaagatctgggtttcttaaaagtctttcctttttgttgggatccaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agaatcgatttctgaagatctgggtttcttaaaagtctttcctttttgttgggatccaaa 540
Query: 541 caacaaaagaaaagaaagcagagatgaatattggtcgcctagtgtggaacgaggacgata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caacaaaagaaaagaaagcagagatgaatattggtcgcctagtgtggaacgaggacgata 600
Query: 601 aagcgattgttgcgtcattactgggcaaacgagctctcgattacttgctttccaactctg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aagcgattgttgcgtcattactgggcaaacgagctctcgattacttgctttccaactctg 660
Query: 661 tttccaatgctaatctcttgatgactctaggaagcgacgagaatctgcagaacaagctct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tttccaatgctaatctcttgatgactctaggaagcgacgagaatctgcagaacaagctct 720
Query: 721 cggatctcgtcgagagacccaacgcttctaatttctcttggaactacgccattttctggc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cggatctcgtcgagagacccaacgcttctaatttctcttggaactacgccattttctggc 780
Query: 781 agatttccaggtcaaaggccggagatttggttctctgttggggcgatggatattgcagag 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agatttccaggtcaaaggccggagatttggttctctgttggggcgatggatattgcagag 840
Query: 841 agcctaaagaaggagagaaatcagagatcgttaggattctaagtatgggaagagaagaag 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 agcctaaagaaggagagaaatcagagatcgttaggattctaagtatgggaagagaagaag 900
Query: 901 aaacgcatcagactatgagaaagagagtattgcaaaagcttcatgatttgtttggtggct 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 aaacgcatcagactatgagaaagagagtattgcaaaagcttcatgatttgtttggtggct 960
Query: 961 cagaagaagagaactgtgctttaggactagatagagttactgacactgagatgtttcttc 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 cagaagaagagaactgtgctttaggactagatagagttactgacactgagatgtttcttc 1020
Query: 1021 tttcttctatgtatttctcattccctcgaggtgaaggtggtccaggcaagtgttttgcct 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tttcttctatgtatttctcattccctcgaggtgaaggtggtccaggcaagtgttttgcct 1080
Query: 1081 ctgctaaacctgtttggttatccgatgtcgtcaattcgggttctgattattgcgttagat 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ctgctaaacctgtttggttatccgatgtcgtcaattcgggttctgattattgcgttagat 1140
Query: 1141 cgtttcttgctaaatctgctggcattcagactgttgttttggttcctactgatcttggtg 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 cgtttcttgctaaatctgctggcattcagactgttgttttggttcctactgatcttggtg 1200
Query: 1201 ttgttgagttaggctcaacttcatgtttgcctgaaagtgaagactcaatcttgtctataa 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 ttgttgagttaggctcaacttcatgtttgcctgaaagtgaagactcaatcttgtctataa 1260
Query: 1261 gatcattgtttaccagtagtttgcctccggttagagctgttgctttacctgttactgtag 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 gatcattgtttaccagtagtttgcctccggttagagctgttgctttacctgttactgtag 1320
Query: 1321 ctgaaaagattgatgataacagaacgaagatattcggcaaggatttgcacaattcagggt 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 ctgaaaagattgatgataacagaacgaagatattcggcaaggatttgcacaattcagggt 1380
Query: 1381 ttcttcaacatcatcagcatcaccaacaacaacaacaacaaccaccgcaacagcaacagc 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ttcttcaacatcatcagcatcaccaacaacaacaacaacaaccaccgcaacagcaacagc 1440
Query: 1441 atagacagtttagagagaaactcacggttagaaaaatggatgatagagctcccaagagat 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 atagacagtttagagagaaactcacggttagaaaaatggatgatagagctcccaagagat 1500
Query: 1501 tagatgcttatccgaataatgggaacaggtttatgttttcgaacccaggcaccaacaaca 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 tagatgcttatccgaataatgggaacaggtttatgttttcgaacccaggcaccaacaaca 1560
Query: 1561 acactcttctgagtcctacttgggttcaacctgagaactacacgaggccaatcaacgtga 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 acactcttctgagtcctacttgggttcaacctgagaactacacgaggccaatcaacgtga 1620
Query: 1621 aggaagttccaagcacggatgagttcaagtttttacctttgcagcaatcatcgcagaggc 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 aggaagttccaagcacggatgagttcaagtttttacctttgcagcaatcatcgcagaggc 1680
Query: 1681 tgcttcctcctgctcaaatgcagatagatttctctgctgcgagttcaagggcttcagaga 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 tgcttcctcctgctcaaatgcagatagatttctctgctgcgagttcaagggcttcagaga 1740
Query: 1741 ataattcagatggagaaggaggaggggaatgggcagatgcagtgggtgctgatgaatctg 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 ataattcagatggagaaggaggaggggaatgggcagatgcagtgggtgctgatgaatctg 1800
Query: 1801 gtaacaacagaccaagaaaacgcggaaggagacctgccaacggaagagcggaagctttga 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 gtaacaacagaccaagaaaacgcggaaggagacctgccaacggaagagcggaagctttga 1860
Query: 1861 accatgtagaagcagagaggcagaggcgtgagaagcttaaccagaggttttacgctctga 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 accatgtagaagcagagaggcagaggcgtgagaagcttaaccagaggttttacgctctga 1920
Query: 1921 gatccgttgttcccaacatatccaagatggacaaagcgtccttgttgggagacgcggttt 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 gatccgttgttcccaacatatccaagatggacaaagcgtccttgttgggagacgcggttt 1980
Query: 1981 cttatataaacgagcttcacgcgaagctaaaggtcatggaagcagagagagagaggttag 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 cttatataaacgagcttcacgcgaagctaaaggtcatggaagcagagagagagaggttag 2040
Query: 2041 ggtatagctcaaatccacctatcagcttggattcagatataaatgttcaaacctcaggtg 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 ggtatagctcaaatccacctatcagcttggattcagatataaatgttcaaacctcaggtg 2100
Query: 2101 aagatgtcacagtgaggataaactgtccgttggagtctcatccggcttccagaatcttcc 2160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 aagatgtcacagtgaggataaactgtccgttggagtctcatccggcttccagaatcttcc 2160
Query: 2161 atgcgtttgaagagagtaaagtagaagtgataaactcgaacctggaagtttctcaggaca 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 atgcgtttgaagagagtaaagtagaagtgataaactcgaacctggaagtttctcaggaca 2220
Query: 2221 cagtgttgcatacgtttgtagtcaaatctgaagaattaacgaaagagaagctgatatcgg 2280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2221 cagtgttgcatacgtttgtagtcaaatctgaagaattaacgaaagagaagctgatatcgg 2280
Query: 2281 ccttgtctagagagcaaacaaattcagttcagtcaagaacatcatcaggtagatagcctt 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2281 ccttgtctagagagcaaacaaattcagttcagtcaagaacatcatcaggtagatagcctt 2340
Query: 2341 ttgagagacagaagaaggtggaagtaagtttgtaatcaagaaccggttttgaatggttct 2400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2341 ttgagagacagaagaaggtggaagtaagtttgtaatcaagaaccggttttgaatggttct 2400
Query: 2401 ttttttcttctaggtatcttttgtttttacctttttttggttatatacctgtaagaatcc 2460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2401 ttttttcttctaggtatcttttgtttttacctttttttggttatatacctgtaagaatcc 2460
Query: 2461 tccaaactaggattttagaagttttattgacaaaagtagacattatcatttactcgtttt 2520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2461 tccaaactaggattttagaagttttattgacaaaagtagacattatcatttactcgtttt 2520
Query: 2521 acagtggacaaagctgggaattaagtaattaacgataatgttgtatctgttaaagtcg 2578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2521 acagtggacaaagctgggaattaagtaattaacgataatgttgtatctgttaaagtcg 2578
>At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family protein contains
Pfam profile: PF00010 helix-loop-helix DNA-binding domain
Length = 2363
Score = 75.8 bits (38), Expect = 2e-12
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 1857 ttgaaccatgtagaagcagagaggcagaggcgtgagaagcttaaccagaggttttacgct 1916
||||||||||| ||||| ||||||||||| || |||||||||||||| || || ||||||
Sbjct: 1608 ttgaaccatgtggaagctgagaggcagagacgcgagaagcttaaccaaagattctacgct 1667
Query: 1917 ctgagatccgttgttcccaacatatccaagatggacaa 1954
| |||| |||||||| ||||| || || ||||||||
Sbjct: 1668 ttacgatcagttgttccaaacatttctaaaatggacaa 1705
Score = 44.1 bits (22), Expect = 0.006
Identities = 102/126 (80%), Gaps = 2/126 (1%)
Strand = Plus / Plus
Query: 914 tatgagaaagagagtattgcaaaagcttcatgatttgtttggtggctcagaagaagagaa 973
|||||| |||||||| ||||| ||||||||| ||||||||||| || || ||||| ||
Sbjct: 788 tatgaggaagagagtgttgcagaagcttcataggttgtttggtggatctgatgaagacaa 847
Query: 974 ctgtgctttaggactagatagagttactgacactgagatgtttcttctt-tcttctatgt 1032
| |||||| | |||| | |||||||| |||||||| ||||||||| |||| ||||
Sbjct: 848 ttatgctttgagcttagagaaagttactgctactgagat-tttcttcttagcttccatgt 906
Query: 1033 atttct 1038
||||||
Sbjct: 907 atttct 912
Score = 38.2 bits (19), Expect = 0.36
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 759 tggaactacgccattttctggca 781
||||||||||| |||||||||||
Sbjct: 624 tggaactacgctattttctggca 646
Score = 34.2 bits (17), Expect = 5.7
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 1180 tggttcctactgatcttggtgttgttgag 1208
|||||||||||||| ||||||| |||||
Sbjct: 1054 tggttcctactgatgctggtgttcttgag 1082
>At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family protein
Length = 1536
Score = 67.9 bits (34), Expect = 4e-10
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 1855 ctttgaaccatgtagaagcagagaggcagaggcgtgagaagcttaaccagaggttttacg 1914
|||||||||| || |||||||||||| ||| ||||||||||| ||||| || || ||||
Sbjct: 1022 ctttgaaccacgtggaagcagagaggatgagacgtgagaagctaaaccacagattctacg 1081
Query: 1915 ctctgagatccgttgttcccaacatatccaagatggacaaagcgtccttgttgggagacg 1974
| | || | ||||| || ||| |||| || ||||||||| |||| ||| | | |||||
Sbjct: 1082 cattacgagcggttgtaccaaacgtatcgaaaatggacaaaacgtcgttgctcgaagacg 1141
Query: 1975 cggtttcttatataaacgagct 1996
|||||| ||| |||||||||||
Sbjct: 1142 cggtttgttacataaacgagct 1163
>At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family protein contains
Pfam profile: PF00010 helix-loop-helix DNA-binding domain
Length = 1798
Score = 61.9 bits (31), Expect = 3e-08
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 1860 aaccatgtagaagcagagaggcagaggcgtgagaagcttaaccagaggttttacgctctg 1919
|||||||| ||||| || |||||||| | |||||||| |||||||| || |||||| ||
Sbjct: 1176 aaccatgtggaagcggaacggcagaggagggagaagctgaaccagagattctacgctttg 1235
Query: 1920 agatccgttgttcccaacatatccaagatggacaa 1954
||| | || || || ||||| ||||||||||||||
Sbjct: 1236 agagcggtggtgcctaacatctccaagatggacaa 1270
>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) identical to FUSCA3
GB:AAC35247 [Arabidopsis thaliana] (Plant J. 6, 379-387
(1994))
Length = 1380
Score = 60.0 bits (30), Expect = 1e-07
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1404 caacaacaacaacaacaaccaccgcaacagcaacagca 1441
||||||||||||||||||| || |||||||||||||||
Sbjct: 937 caacaacaacaacaacaacaacagcaacagcaacagca 974
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1404 caacaacaacaacaacaaccaccgcaacagcaaca 1438
||||||||||||||||| | || ||||||||||||
Sbjct: 943 caacaacaacaacaacagcaacagcaacagcaaca 977
Score = 42.1 bits (21), Expect = 0.023
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1409 acaacaacaacaaccaccgcaacagcaacagca 1441
|||||||||||||| || ||||||||||||||
Sbjct: 936 acaacaacaacaacaacaacaacagcaacagca 968
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 126,738
Number of Sequences: 29161
Number of extensions: 126738
Number of successful extensions: 5662
Number of sequences better than 10.0: 416
length of query: 2578
length of database: 44,058,232
effective HSP length: 19
effective length of query: 2559
effective length of database: 43,504,173
effective search space: 111327178707
effective search space used: 111327178707
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)