BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.20.C1
(833 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01250.1 68414.m00042 AP2 domain-containing transcriptio... 1614 0.0
At5g52020.1 68418.m06455 AP2 domain-containing protein low ... 54 2e-06
At5g05410.1 68418.m00583 DRE-binding protein (DREB2A) ident... 48 1e-04
At1g19210.1 68414.m02391 AP2 domain-containing transcriptio... 48 1e-04
At3g57600.1 68416.m06417 AP2 domain-containing transcriptio... 42 0.007
>At1g01250.1 68414.m00042 AP2 domain-containing transcription factor, putative
similar to transcription factor TINY GB:CAA64359
GI:1246403 from [Arabidopsis thaliana]
Length = 834
Score = 1614 bits (814), Expect = 0.0
Identities = 823/826 (99%)
Strand = Plus / Plus
Query: 7 ataacaaactctttaatgtcaccacagagaatgaagctatcaccaccaccagttaccaac 66
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 ataacaaactctttaatgtcaccacagagaatgaagctatcatcaccaccagttaccaac 60
Query: 67 aacgaaccaaccgccaccgcttctgccgttaaatcttgcggcggaggaggtaaagaaacc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacgaaccaaccgccaccgcttctgccgttaaatcttgcggcggaggaggtaaagaaacc 120
Query: 127 agctcatcgaccacgaggcatccagtgtaccacggagttcgcaaacgccgatggggaaaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agctcatcgaccacgaggcatccagtgtaccacggagttcgcaaacgccgatggggaaaa 180
Query: 187 tgggtttctgagatcagagagccccggaaaaagtctcggatttggctcggatcttttccg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgggtttctgagatcagagagccccggaaaaagtctcggatttggctcggatcttttccg 240
Query: 247 gtgccggagatggctgctaaagcctacgacgtggcagcgttttgtctaaaaggtagaaaa 306
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgccggagatggctgctaaggcctacgacgtggcagcgttttgtctaaaaggtagaaaa 300
Query: 307 gctcagctgaatttccctgaagaaatcgaggatctacctcgaccgtccacgtgtactccc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gctcagctgaatttccctgaagaaatcgaggatctacctcgaccgtccacgtgtactccc 360
Query: 367 agagatatccaagtcgcagcggccaaagcagccaacgccgtgaagatcatcaaaatggga 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agagatatccaagtcgcagcggccaaagcagccaacgccgtgaagatcatcaaaatggga 420
Query: 427 gatgatgacgtggcaggaatagacgacggagatgatttctgggaaggcattgagctgcct 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatgatgacgtggcaggaatagacgacggagatgatttctgggaaggcattgagctgcct 480
Query: 487 gagcttatgatgactggaggtgggtggtcgccggagccttttgttgccggagatgatgcc 546
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gagcttatgatgagtggaggtgggtggtcgccggagccttttgttgccggagatgatgcc 540
Query: 547 acgtggcttgtcgacggagacttgtatcagtatcagttcatggcgtgtctgtgagtgttg 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acgtggcttgtcgacggagacttgtatcagtatcagttcatggcgtgtctgtgagtgttg 600
Query: 607 ctgtcgattgtgtcgtattcgttatacgtgtacgttgtatcgttattgtgttggctcact 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctgtcgattgtgtcgtattcgttatacgtgtacgttgtatcgttattgtgttggctcact 660
Query: 667 taatttaatgcatatgcatgtatattttcatttatttgtttctagtttattgttttacgc 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 taatttaatgcatatgcatgtatattttcatttatttgtttctagtttattgttttacgc 720
Query: 727 gattaataattagatacctgtttctcaagttagttatcaggtttgtacgcatctacaaaa 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gattaataattagatacctgtttctcaagttagttatcaggtttgtacgcatctacaaaa 780
Query: 787 atacgtataagtgtatgttcttatatacagtttttgtttgcataag 832
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 atacgtataagtgtatgttcttatatacagtttttgtttgcataag 826
>At5g52020.1 68418.m06455 AP2 domain-containing protein low similarity to DREB1B
GI:3738226 from [Arabidopsis thaliana]; contains Pfam
profile PF00847: AP2 domain
Length = 991
Score = 54.0 bits (27), Expect = 2e-06
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 181 ggaaaatgggtttctgagatcagagagccccggaaaaagtctcggatttggctcggatct 240
||||||||||| || ||||| |||||||| || |||| | | | ||||||||||| ||
Sbjct: 275 ggaaaatgggtatcggagattagagagccacgtaaaacgacaagaatttggctcgggact 334
Query: 241 tttccggtgccggagatggctgc 263
| |||||| ||||||||||||||
Sbjct: 335 tatccggtaccggagatggctgc 357
>At5g05410.1 68418.m00583 DRE-binding protein (DREB2A) identical to DREB2A
GI:3738230 from [Arabidopsis thaliana] ; supported by
cDNA:gi_3738229_dbj_AB007790.1_AB007790
Length = 1450
Score = 48.1 bits (24), Expect = 1e-04
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 178 tggggaaaatgggtttctgagatcagagagcc 209
||||| ||||||||| ||||||||||||||||
Sbjct: 447 tggggtaaatgggttgctgagatcagagagcc 478
>At1g19210.1 68414.m02391 AP2 domain-containing transcription factor, putative
similar to AP2 domain transcription factor GI:4567204
from [Arabidopsis thaliana]
Length = 709
Score = 48.1 bits (24), Expect = 1e-04
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 177 atggggaaaatgggtttctgagatcaga 204
|||||||||||||||||| |||||||||
Sbjct: 57 atggggaaaatgggtttcagagatcaga 84
>At3g57600.1 68416.m06417 AP2 domain-containing transcription factor, putative
various proteins containing an AP2 transcription factor
domain, Arabidopsis thaliana
Length = 1081
Score = 42.1 bits (21), Expect = 0.007
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 178 tggggaaaatgggtttctgagatcagagagccc 210
||||| |||||||| |||||||||||||||||
Sbjct: 164 tggggcaaatgggtggctgagatcagagagccc 196
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,261
Number of Sequences: 29161
Number of extensions: 25261
Number of successful extensions: 671
Number of sequences better than 10.0: 71
length of query: 833
length of database: 44,058,232
effective HSP length: 17
effective length of query: 816
effective length of database: 43,562,495
effective search space: 35546995920
effective search space used: 35546995920
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)