BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.18.C1
(829 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01230.1 68414.m00038 ORMDL family protein contains Pfam... 1608 0.0
At5g42000.1 68418.m05113 ORMDL family protein contains Pfam... 119 4e-26
At5g51540.1 68418.m06391 peptidase M3 family protein / thim... 38 0.12
At5g43370.1 68418.m05301 inorganic phosphate transporter (P... 38 0.12
At5g43350.1 68418.m05299 inorganic phosphate transporter (P... 38 0.12
>At1g01230.1 68414.m00038 ORMDL family protein contains Pfam domain PF04061:
ORMDL family
Length = 812
Score = 1608 bits (811), Expect = 0.0
Identities = 811/811 (100%)
Strand = Plus / Plus
Query: 2 aaaattaaaccaaagaaacaaacaatccttgttctcgccgaaatagagaattttgtgaat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaattaaaccaaagaaacaaacaatccttgttctcgccgaaatagagaattttgtgaat 60
Query: 62 ctgggtttttagttcaggtgttaatataagattttgatcaaaagaagacgagattcgatc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgggtttttagttcaggtgttaatataagattttgatcaaaagaagacgagattcgatc 120
Query: 122 cgatccgatctgattgaagaagaaatggcgaatctgtatgtgaaagcggttccaccaccg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgatccgatctgattgaagaagaaatggcgaatctgtatgtgaaagcggttccaccaccg 180
Query: 182 gatatgaataggaatacggaatggttcatgtatccaggagtttggacgacttacatgctt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatatgaataggaatacggaatggttcatgtatccaggagtttggacgacttacatgctt 240
Query: 242 attctcttcttcggttggctcgttgttctctctgtctctggttgttcccctggaatggct 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attctcttcttcggttggctcgttgttctctctgtctctggttgttcccctggaatggct 300
Query: 302 tggactgttgttaatctcgctcacttcgttgtaacgtatcacagcttccactggatgaaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggactgttgttaatctcgctcacttcgttgtaacgtatcacagcttccactggatgaaa 360
Query: 362 ggaactccttttgcagatgaccaaggaatctacaatggtttaacttggtgggaacaaatg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaactccttttgcagatgaccaaggaatctacaatggtttaacttggtgggaacaaatg 420
Query: 422 gacaatggtcaacagcttacccgcaaccgcaaatttcttaccctagttcctgttgttctg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gacaatggtcaacagcttacccgcaaccgcaaatttcttaccctagttcctgttgttctg 480
Query: 482 tacttgattgcatcgcatacaacagattacagacatccatggctgttcctcaacacactc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tacttgattgcatcgcatacaacagattacagacatccatggctgttcctcaacacactc 540
Query: 542 gctgtgatggttctcgttgttgccaagttccccaacatgcacaaggtacgcatctttggt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gctgtgatggttctcgttgttgccaagttccccaacatgcacaaggtacgcatctttggt 600
Query: 602 atcaatggtgataaataagtttcctttacggcaagagaacacctgaaagaaggaaaaggg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atcaatggtgataaataagtttcctttacggcaagagaacacctgaaagaaggaaaaggg 660
Query: 662 gatataagcgaacatatatatgtgtaaatgttcatatgagttggtttaattctcgagtca 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gatataagcgaacatatatatgtgtaaatgttcatatgagttggtttaattctcgagtca 720
Query: 722 tgttttttgttggatatttgtaagtaaactctctaattttgaagctttcatcttttacct 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgttttttgttggatatttgtaagtaaactctctaattttgaagctttcatcttttacct 780
Query: 782 tttataatagacacgaaaaagctttcccttc 812
|||||||||||||||||||||||||||||||
Sbjct: 781 tttataatagacacgaaaaagctttcccttc 811
>At5g42000.1 68418.m05113 ORMDL family protein contains Pfam domain PF04061:
ORMDL family
Length = 900
Score = 119 bits (60), Expect = 4e-26
Identities = 261/328 (79%)
Strand = Plus / Plus
Query: 180 cggatatgaataggaatacggaatggttcatgtatccaggagtttggacgacttacatgc 239
||||| ||||| |||| || || ||||||| ||||| || |||||||| ||||| || |
Sbjct: 114 cggatgtgaatcggaacacagagtggttcacatatcctggtgtttggactacttatattc 173
Query: 240 ttattctcttcttcggttggctcgttgttctctctgtctctggttgttcccctggaatgg 299
| || ||||||||| ||||||| | |||||||| |||| |||||| ||||| || |
Sbjct: 174 tcatcctcttcttctcttggctcctcgttctctccgtcttccattgttctcctggcatcg 233
Query: 300 cttggactgttgttaatctcgctcacttcgttgtaacgtatcacagcttccactggatga 359
||||||| ||||| |||||||||| ||| || |||||||| |||||| |||| ||
Sbjct: 234 cttggaccattgttcatctcgctcatttcaccgtcacgtatcattccttccattggaaga 293
Query: 360 aaggaactccttttgcagatgaccaaggaatctacaatggtttaacttggtgggaacaaa 419
| ||||| || |||| |||||| |||||| |||| ||| | || |||||||||||||| |
Sbjct: 294 agggaacaccatttggagatgatcaaggagtctataatagattgacttggtgggaacaga 353
Query: 420 tggacaatggtcaacagcttacccgcaaccgcaaatttcttaccctagttcctgttgttc 479
| || ||||| | |||||||| || || ||||||||||| ||| | |||||||||||
Sbjct: 354 ttgataatggcaagcagcttacacgtaatcgcaaatttctcaccgttgttcctgttgtct 413
Query: 480 tgtacttgattgcatcgcatacaacaga 507
|||||||||| || || || ||||||||
Sbjct: 414 tgtacttgatagcctctcacacaacaga 441
>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet oligopeptidase
family protein low similarity to SP|Q99797 Mitochondrial
intermediate peptidase, mitochondrial precursor (EC
3.4.24.59) {Homo sapiens}; contains Pfam profile PF01432:
Peptidase family M3
Length = 2583
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 273 ctgtctctggttgttcccc 291
|||||||||||||||||||
Sbjct: 1768 ctgtctctggttgttcccc 1750
>At5g43370.1 68418.m05301 inorganic phosphate transporter (PHT2) identical to
inorganic phosphate transporter [Arabidopsis thaliana]
GI:2780348
Length = 1575
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 245 ctcttcttcggttggctcg 263
|||||||||||||||||||
Sbjct: 256 ctcttcttcggttggctcg 274
>At5g43350.1 68418.m05299 inorganic phosphate transporter (PHT1) (PT1) identical
to inorganic phosphate transporter [Arabidopsis
thaliana] GI:2258116
Length = 1780
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 245 ctcttcttcggttggctcg 263
|||||||||||||||||||
Sbjct: 332 ctcttcttcggttggctcg 350
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,514
Number of Sequences: 29161
Number of extensions: 44514
Number of successful extensions: 3227
Number of sequences better than 10.0: 336
length of query: 829
length of database: 44,058,232
effective HSP length: 17
effective length of query: 812
effective length of database: 43,562,495
effective search space: 35372745940
effective search space used: 35372745940
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)