BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.17.C2
(983 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01225.1 68414.m00037 NC domain-containing protein-relat... 1877 0.0
At4g00905.1 68417.m00123 expressed protein 119 5e-26
At4g03160.1 68417.m00431 hypothetical protein 58 1e-07
At1g70630.1 68414.m08141 expressed protein 56 6e-07
At1g36050.1 68414.m04479 expressed protein 56 6e-07
>At1g01225.1 68414.m00037 NC domain-containing protein-related contains weak hit
to Pfam profile PF04970: NC domain
Length = 1025
Score = 1877 bits (947), Expect = 0.0
Identities = 975/983 (99%), Gaps = 1/983 (0%)
Strand = Plus / Plus
Query: 1 aaggtaaaaaaaagctttgtgcagagagagagagaagaagaaaaatgggtttgcttacga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 aaggtaaaaaaaagctttgtgcagagagagagagaagaagaaaaatgggtttgcttacga 93
Query: 61 acaagattgagagagaagagctaaagccaggagatcacatctatacttacagagcaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 acaagattgagagagaagagctaaagccaggagatcacatctatacttacagagcaatct 153
Query: 121 tcgcttattctcaccacggaatctttgtcggtgggtccaaagttgttcatttcagacctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tcgcttattctcaccacggaatctttgtcggtgggtccaaagttgttcatttcagacctg 213
Query: 181 aacacaaccccatggattcatcaacatcatcaatatcatcatcttcctctgaagatatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aacacaaccccatggattcatcaacatcatcaatatcatcatcttcctctgaagatatct 273
Query: 241 gttccatatttcctgattgcggtttcagacaaccggacagtggagtagtcctttcttgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gttccatatttcctgattgcggtttcagacaaccggacagtggagtagtcctttcttgct 333
Query: 301 tagactgtttcctcaagaacggctcactctactgcttcgaatatggagtcagtccatcgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tagactgtttcctcaagaacggctcactctactgcttcgaatatggagtcagtccatcgg 393
Query: 361 ttttcctaaccaaagtccgcggagggacttgcacaaccgagcaatctgatacaactgatt 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 394 ttttcctaaccaaagtccgcggagggacttgcacaaccgcgcaatctgatacaactgatt 453
Query: 421 cactcatccacagggcaatgtaccttctccaaaacggatttgagcaactaaaacatttac 480
|| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct: 454 cagtcatccacagggcaatgtaccttctccaaaacggatttg-gcaactacgacattttc 512
Query: 481 aaaaacaactgtgaggatttcgcgctctattgcaagaccggtttgcttataatggataag 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aagaacaactgtgaggatttcgcgctctattgcaagaccggtttgcttataatggataag 572
Query: 541 ctcggtgtagggagaagcggtcaagcttcttcaattgttggtgctcctttggctgcactc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ctcggtgtagggagaagcggtcaagcttcttcaattgttggtgctcctttggctgcactc 632
Query: 601 ctctcttctccttccaaattgcttattccaagtcccattggtgtggcaacagttactgct 660
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ctctcttctcctttcaaattgcttattccaagtcccattggtgtggcaacagttactgct 692
Query: 661 ggtatgtactgtatgagtcgctatgctaccgatattggtgttagaagcgacgtcattaag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ggtatgtactgtatgagtcgctatgctaccgatattggtgttagaagcgacgtcattaag 752
Query: 721 gtctcagttgaggatttggctctcaaccttgacgtaaagaccattgagcaaggtgaagaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gtctcagttgaggatttggctctcaaccttgacgtaaagaccattgagcaaggtgaagaa 812
Query: 781 gaagaagaagacgaagaagaagattctgataccgactatgttaggtgacaaacagatacc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gaagaagaagacgaagaagaagattctgataccgactatgttaggtgacaaacagatacc 872
Query: 841 tatcacctttgttcacgaatttcgatatacataagaaaacatttcagttagaatcctcat 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tatcacctttgttcacgaatttcgatatacataagaaaacatttcagttagaatcctcat 932
Query: 901 gttggttttatgttccctttattgcatttgttggcctattttctgtctgtacaaaatgaa 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 gttggttttatgttccctttattgcatttgttggcctattttctgtctgtacaaaatgaa 992
Query: 961 aacgcagacgttttggtttgggt 983
|||||||||||||||||||||||
Sbjct: 993 aacgcagacgttttggtttgggt 1015
>At4g00905.1 68417.m00123 expressed protein
Length = 845
Score = 119 bits (60), Expect = 5e-26
Identities = 262/328 (79%), Gaps = 1/328 (0%)
Strand = Plus / Plus
Query: 424 tcatccacagggcaatgtaccttctccaaaacggatttgagcaactaaaacatttacaaa 483
||||||| || |||||| ||||||||||||||||||||| | ||||| || | | | |
Sbjct: 410 tcatccatagagcaatgcaccttctccaaaacggatttg-gtaactacaatgtcttccag 468
Query: 484 aacaactgtgaggatttcgcgctctattgcaagaccggtttgcttataatggataagctc 543
|| ||||| || ||||| || ||||| |||||||| || ||||| || |||||||| |
Sbjct: 469 aataactgcgaagattttgctctctactgcaagacaggattgctcattctggataagaac 528
Query: 544 ggtgtagggagaagcggtcaagcttcttcaattgttggtgctcctttggctgcactcctc 603
|| || |||||||| |||||||| ||| || | ||||||||| | |||||||| |||
Sbjct: 529 ggggttgggagaagtggtcaagccagttctatcataggtgctcctctagctgcactactc 588
Query: 604 tcttctccttccaaattgcttattccaagtcccattggtgtggcaacagttactgctggt 663
|| || ||| || |||| | ||||||| ||| ||||||| ||||| || ||||||||
Sbjct: 589 tcgtcacctctcacattgttgattccaaatcctgttggtgtagcaactgtcactgctggg 648
Query: 664 atgtactgtatgagtcgctatgctaccgatattggtgttagaagcgacgtcattaaggtc 723
||||| ||||||||| | |||||||| ||||| |||||||||| ||| || || |||||
Sbjct: 649 atgtattgtatgagtaggtatgctactgatatcggtgttagaaacgatgtgatcaaggtt 708
Query: 724 tcagttgaggatttggctctcaaccttg 751
| ||||||||||| ||||| |||||||
Sbjct: 709 cctgttgaggatttagctctgaaccttg 736
Score = 83.8 bits (42), Expect = 3e-15
Identities = 99/118 (83%)
Strand = Plus / Plus
Query: 69 gagagagaagagctaaagccaggagatcacatctatacttacagagcaatcttcgcttat 128
|||||||| ||||| || || || ||||||||||| ||||| |||| |||||||||||
Sbjct: 25 gagagagacgagcttaaacctggtgatcacatctacacttatcgagccgtcttcgcttat 84
Query: 129 tctcaccacggaatctttgtcggtgggtccaaagttgttcatttcagacctgaacaca 186
||||||||||| | ||||| ||||| | |||||| |||||||||| |||||| ||||
Sbjct: 85 tctcaccacggcgtatttgttggtggttgcaaagtggttcatttcaaacctgagcaca 142
Score = 77.8 bits (39), Expect = 2e-13
Identities = 99/119 (83%)
Strand = Plus / Plus
Query: 279 agtggagtagtcctttcttgcttagactgtttcctcaagaacggctcactctactgcttc 338
||||||||||| ||||||||| ||||||| || |||||||| || || |||||| | ||
Sbjct: 265 agtggagtagtactttcttgcctagactgctttctcaagaaaggttctctctaccgtttt 324
Query: 339 gaatatggagtcagtccatcggttttcctaaccaaagtccgcggagggacttgcacaac 397
|| ||||||||||| ||||| ||||||| |||| | ||||||| || || ||||||||
Sbjct: 325 gattatggagtcagctcatcgattttcctcaccagattccgcggtggcacgtgcacaac 383
Score = 40.1 bits (20), Expect = 0.035
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 784 gaagaagacgaagaagaaga 803
||||||||||||||||||||
Sbjct: 191 gaagaagacgaagaagaaga 172
Score = 36.2 bits (18), Expect = 0.54
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 778 gaagaagaagaagacgaagaagaaga 803
|||||||| ||||| |||||||||||
Sbjct: 191 gaagaagacgaagaagaagaagaaga 166
Score = 34.2 bits (17), Expect = 2.1
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 775 gaagaagaagaagaagacgaagaag 799
||||| ||||||||||| |||||||
Sbjct: 188 gaagacgaagaagaagaagaagaag 164
Score = 34.2 bits (17), Expect = 2.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 775 gaagaagaagaagaaga 791
|||||||||||||||||
Sbjct: 182 gaagaagaagaagaaga 166
>At4g03160.1 68417.m00431 hypothetical protein
Length = 579
Score = 58.0 bits (29), Expect = 1e-07
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 775 gaagaagaagaagaagacgaagaagaaga 803
|||||||||||||||||||||||||||||
Sbjct: 79 gaagaagaagaagaagacgaagaagaaga 107
Score = 40.1 bits (20), Expect = 0.035
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 776 aagaagaagaagaagacgaagaagaaga 803
|||||||||||||||| || ||||||||
Sbjct: 77 aagaagaagaagaagaagacgaagaaga 104
Score = 38.2 bits (19), Expect = 0.14
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 775 gaagaagaagaagaagacgaagaagaa 801
|||||||||||||| || |||||||||
Sbjct: 82 gaagaagaagaagacgaagaagaagaa 108
>At1g70630.1 68414.m08141 expressed protein
Length = 2237
Score = 56.0 bits (28), Expect = 6e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 772 ggtgaagaagaagaagaagacgaagaagaaga 803
|||||||||||||||||||| |||||||||||
Sbjct: 74 ggtgaagaagaagaagaagaagaagaagaaga 43
Score = 36.2 bits (18), Expect = 0.54
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 775 gaagaagaagaagaagac 792
||||||||||||||||||
Sbjct: 59 gaagaagaagaagaagac 42
>At1g36050.1 68414.m04479 expressed protein
Length = 1611
Score = 56.0 bits (28), Expect = 6e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 772 ggtgaagaagaagaagaagacgaagaagaaga 803
|||||||||||||||||||| |||||||||||
Sbjct: 46 ggtgaagaagaagaagaagaagaagaagaaga 77
Score = 46.1 bits (23), Expect = 6e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 775 gaagaagaagaagaagacgaagaagaa 801
||||||||||||||||| |||||||||
Sbjct: 52 gaagaagaagaagaagaagaagaagaa 78
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 86,003
Number of Sequences: 29161
Number of extensions: 86003
Number of successful extensions: 12385
Number of sequences better than 10.0: 2078
length of query: 983
length of database: 44,058,232
effective HSP length: 18
effective length of query: 965
effective length of database: 43,533,334
effective search space: 42009667310
effective search space used: 42009667310
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)