BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.16.C1
(631 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01210.1 68414.m00035 DNA-directed RNA polymerase III fa... 1217 0.0
At4g07950.1 68417.m01275 DNA-directed RNA polymerase III fa... 545 e-154
At1g80670.1 68414.m09466 transducin family protein / WD-40 ... 42 0.006
At1g75150.1 68414.m08729 expressed protein ; expression sup... 42 0.006
At1g32240.1 68414.m03966 myb family transcription factor (K... 40 0.022
>At1g01210.1 68414.m00035 DNA-directed RNA polymerase III family protein similar
to SP|O13896 DNA-directed RNA polymerases III 12.5 kDa
polypeptide (EC 2.7.7.6) {Schizosaccharomyces pombe};
contains Pfam profiles PF02150: RNA polymerases M/15 Kd
subunit, PF01096: Transcription factor S-II (TFIIS)
Length = 616
Score = 1217 bits (614), Expect = 0.0
Identities = 614/614 (100%)
Strand = Plus / Plus
Query: 1 agaatgttgaagaaacagaaacttagggtttatgtggtggatgaatgatttagcagcgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatgttgaagaaacagaaacttagggtttatgtggtggatgaatgatttagcagcgaa 60
Query: 61 ttgaagggtgtggtggaagatggagttttgtccaacatgtgggaatctgttgcgatacga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgaagggtgtggtggaagatggagttttgtccaacatgtgggaatctgttgcgatacga 120
Query: 121 gggaggtggcaattcgagattcttctgttccacatgtccatacgtcgcctacatccaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gggaggtggcaattcgagattcttctgttccacatgtccatacgtcgcctacatccaaag 180
Query: 181 acaggtggagataaagaagaagcaacttctggttaagaaatctatagaagctgttgtgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acaggtggagataaagaagaagcaacttctggttaagaaatctatagaagctgttgtgac 240
Query: 241 taaagatgatatacccacagctgctgaaactgaagccccatgtccaaggtgtggccacga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taaagatgatatacccacagctgctgaaactgaagccccatgtccaaggtgtggccacga 300
Query: 301 caaggcatacttcaaatcaatgcagattcgttcagcagatgagccagaatcaagatttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caaggcatacttcaaatcaatgcagattcgttcagcagatgagccagaatcaagatttta 360
Query: 361 tagatgcttgaagtgcgagttcacttggcgtgaggaatgaactgactgatgatcatcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tagatgcttgaagtgcgagttcacttggcgtgaggaatgaactgactgatgatcatcttc 420
Query: 421 tccgtctctttgcctctgccaattttgaaagtttctacttttgcaaccttcttagagttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tccgtctctttgcctctgccaattttgaaagtttctacttttgcaaccttcttagagttt 480
Query: 481 gttttaccattgcaaatttagcagatcctttatgtactctgcttctttctgtctcacagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gttttaccattgcaaatttagcagatcctttatgtactctgcttctttctgtctcacagc 540
Query: 541 tcaatagtttctgtttcgattaaattttggaatgttgtgcaaagttttaatctttgaggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcaatagtttctgtttcgattaaattttggaatgttgtgcaaagttttaatctttgaggt 600
Query: 601 gaaagagatgaagc 614
||||||||||||||
Sbjct: 601 gaaagagatgaagc 614
>At4g07950.1 68417.m01275 DNA-directed RNA polymerase III family protein similar
to SP|Q9Y2Y1 DNA-directed RNA polymerases III 12.5 kDa
polypeptide (EC 2.7.7.6) (RNA polymerase III C11
subunit) {Homo sapiens}; contains Pfam profiles PF02150:
RNA polymerases M/15 Kd subunit, PF01096: Transcription
factor S-II (TFIIS)
Length = 737
Score = 545 bits (275), Expect = e-154
Identities = 329/347 (94%)
Strand = Plus / Plus
Query: 56 gcgaattgaagggtgtggtggaagatggagttttgtccaacatgtgggaatctgttgcga 115
||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 108 gcgaattgatcggtgaggtggaagatggagttttgtcccacatgtgggaatctgttgcgc 167
Query: 116 tacgagggaggtggcaattcgagattcttctgttccacatgtccatacgtcgcctacatc 175
|||||||||||||| | ||||||||||||||||||||||||||||||||| ||| | |||
Sbjct: 168 tacgagggaggtgggagttcgagattcttctgttccacatgtccatacgttgccaatatc 227
Query: 176 caaagacaggtggagataaagaagaagcaacttctggttaagaaatctatagaagctgtt 235
|||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 228 gaaagacgggttgagataaagaagaagcaacttctggttaagaaatctatagaacctgtt 287
Query: 236 gtgactaaagatgatatacccacagctgctgaaactgaagccccatgtccaaggtgtggc 295
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 288 gttactaaagatgatatacccacagctgctgaaacagaagctccatgtccaaggtgtggc 347
Query: 296 cacgacaaggcatacttcaaatcaatgcagattcgttcagcagatgagccagaatcaaga 355
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cacgacaaggcgtacttcaaatcaatgcagattcgttcagcagatgagccagaatcaaga 407
Query: 356 ttttatagatgcttgaagtgcgagttcacttggcgtgaggaatgaac 402
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttttatagatgcttgaagtgcgagttcacttggcgtgaggaatgaac 454
Score = 103 bits (52), Expect = 2e-21
Identities = 85/96 (88%)
Strand = Plus / Plus
Query: 459 ttttgcaaccttcttagagtttgttttaccattgcaaatttagcagatcctttatgtact 518
|||||||| |||||| ||||||||||||||||| |||| || | || |||| ||||||||
Sbjct: 486 ttttgcaatcttctttgagtttgttttaccattacaaagtttgtagttcctctatgtact 545
Query: 519 ctgcttctttctgtctcacagctcaatagtttctgt 554
||| |||||||||||||| ||||||| |||||||||
Sbjct: 546 ctggttctttctgtctcagagctcaagagtttctgt 581
Score = 71.9 bits (36), Expect = 6e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 556 tcgattaaattttggaatgttgtgcaaagttttaatctttgaggtgaa 603
||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 593 tcgataaaattttggaatattgtgcaaagttttaatttttgaggtgaa 640
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat family protein
contains 5 WD-40 repeats (PF00400) (1 weak); similar to
Hypothetical RAE1-like protein.(SP:Q38942) [Arabidopsis
thaliana]; similar to mRNA-associated protein mrnp 41
((mRNA export protein) (GB:AAC28126) (GI:1903456)(RAE1)
(MRNP41) (SP:P78406) [Homo sapiens]
Length = 1407
Score = 42.1 bits (21), Expect = 0.006
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 611 aagctaaaaaaaaaaaaaaaa 631
|||||||||||||||||||||
Sbjct: 1226 aagctaaaaaaaaaaaaaaaa 1206
>At1g75150.1 68414.m08729 expressed protein ; expression supported by MPSS
Length = 2262
Score = 42.1 bits (21), Expect = 0.006
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 507 cctttatgtactctgcttctt 527
|||||||||||||||||||||
Sbjct: 1174 cctttatgtactctgcttctt 1154
>At1g32240.1 68414.m03966 myb family transcription factor (KAN2) contains Pfam
profile: PF00249 myb-like DNA-binding domain; identical
to cDNA GARP-like putative transcription factor KANADI2
(KAN2) GI:15723594
Length = 1620
Score = 40.1 bits (20), Expect = 0.022
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 611 aagctaaaaaaaaaaaaaaa 630
||||||||||||||||||||
Sbjct: 1551 aagctaaaaaaaaaaaaaaa 1532
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 39,766
Number of Sequences: 29161
Number of extensions: 39766
Number of successful extensions: 6656
Number of sequences better than 10.0: 326
length of query: 631
length of database: 44,058,232
effective HSP length: 17
effective length of query: 614
effective length of database: 43,562,495
effective search space: 26747371930
effective search space used: 26747371930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)