BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.15.C1
(983 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01200.1 68414.m00034 Ras-related GTP-binding protein, p... 1945 0.0
At4g07524.1 68417.m01175 GTP-binding protein, putative simi... 133 3e-30
At4g39990.1 68417.m05663 Ras-related GTP-binding protein, p... 66 6e-10
At3g15060.1 68416.m01905 Ras-related GTP-binding family pro... 66 6e-10
At1g06400.1 68414.m00677 Ras-related GTP-binding protein (A... 64 2e-09
>At1g01200.1 68414.m00034 Ras-related GTP-binding protein, putative similar to
GTP-binding protein GB:D12541 GI:303736 from [Pisum
sativum]
Length = 981
Score = 1945 bits (981), Expect = 0.0
Identities = 981/981 (100%)
Strand = Plus / Plus
Query: 3 tttcactcactcccactttactcaaaagagacttaaactttatagttgttttcttcatca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcactcactcccactttactcaaaagagacttaaactttatagttgttttcttcatca 60
Query: 63 gcgcaataatgaacgaagagatgagcggtgagtcgccggagaataacaaacacgtaaaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcgcaataatgaacgaagagatgagcggtgagtcgccggagaataacaaacacgtaaaga 120
Query: 123 aaccgacgatgccggaaaagatcgattacgtgttcaaggtggtggtcattggagattctg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaccgacgatgccggaaaagatcgattacgtgttcaaggtggtggtcattggagattctg 180
Query: 183 ctgtcgggaaaacgcagctcctctcacgttttacacacaacgagttctgttatgattcaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctgtcgggaaaacgcagctcctctcacgttttacacacaacgagttctgttatgattcaa 240
Query: 243 aatcaaccattggtgtcgagtttcagacacggaccatcactcttcggggcaaactcgtca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatcaaccattggtgtcgagtttcagacacggaccatcactcttcggggcaaactcgtca 300
Query: 303 aagctcagatctgggacaccgccggtcaagagagatacagagcggtgactagcgcctact 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagctcagatctgggacaccgccggtcaagagagatacagagcggtgactagcgcctact 360
Query: 363 acagaggtgcgttaggtgcgatggtggtttacgacattaccaaacgcctctcattcgacc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acagaggtgcgttaggtgcgatggtggtttacgacattaccaaacgcctctcattcgacc 420
Query: 423 acgttgcacgttgggtcgaggaattacgtgctcacgccgatgattccgccgtgatcatgc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acgttgcacgttgggtcgaggaattacgtgctcacgccgatgattccgccgtgatcatgc 480
Query: 483 tcgtcggaaacaaagccgatctctccgttggtaaacgtgccgttcctacggaggatgcag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcgtcggaaacaaagccgatctctccgttggtaaacgtgccgttcctacggaggatgcag 540
Query: 543 tcgaattcgccgagactcaacggctttttttctcggaagtctcggctctaagcggcggaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcgaattcgccgagactcaacggctttttttctcggaagtctcggctctaagcggcggaa 600
Query: 603 acgtcgacgaagcttttttccgtttactcgaggagattttcagccgcgttgttgtttcga 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acgtcgacgaagcttttttccgtttactcgaggagattttcagccgcgttgttgtttcga 660
Query: 663 gaaaagctatggaatccgacggtggagccaccgtgaaacttgacggttcgagaattgatg 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaaaagctatggaatccgacggtggagccaccgtgaaacttgacggttcgagaattgatg 720
Query: 723 tcatctctggttcggatcttgagactagtaatatcaaggaacaagcttcgtgctcgtgtt 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tcatctctggttcggatcttgagactagtaatatcaaggaacaagcttcgtgctcgtgtt 780
Query: 783 gaaattttgagtgataggccataaaatcaaaagccaattattgggcctttctttaagccc 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaaattttgagtgataggccataaaatcaaaagccaattattgggcctttctttaagccc 840
Query: 843 atatatgactcggatctttgtttgggtttttcatgtttagagaattagaggtggtgctta 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 atatatgactcggatctttgtttgggtttttcatgtttagagaattagaggtggtgctta 900
Query: 903 tagtaaaatcaaaaagctattcatgtgtcactcgtaatctctttgacattcttgtatatg 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tagtaaaatcaaaaagctattcatgtgtcactcgtaatctctttgacattcttgtatatg 960
Query: 963 taaagaaaaaacaattctttt 983
|||||||||||||||||||||
Sbjct: 961 taaagaaaaaacaattctttt 981
>At4g07524.1 68417.m01175 GTP-binding protein, putative similar to GTP-binding
protein [Pisum sativum] gi|303736|dbj|BAA02109
Length = 213
Score = 133 bits (67), Expect = 3e-30
Identities = 88/95 (92%)
Strand = Plus / Plus
Query: 224 gagttctgttatgattcaaaatcaaccattggtgtcgagtttcagacacggaccatcact 283
|||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 4 gagttctgttatgagtcaaaatcaaccattagtatggagtttcagacacggaccatcact 63
Query: 284 cttcggggcaaactcgtcaaagctcagatctggga 318
|||| |||||||||||| |||| ||||||||||||
Sbjct: 64 cttcagggcaaactcgttaaagatcagatctggga 98
>At4g39990.1 68417.m05663 Ras-related GTP-binding protein, putative similar to
GTP-binding protein GI:303738 from [Pisum sativum]
Length = 974
Score = 65.9 bits (33), Expect = 6e-10
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 305 gctcagatctgggacaccgccggtcaagagagatacagagcggtgactagcgcctactac 364
|||||||||||||| ||||| ||||| || ||||||||||| || || ||||| ||||||
Sbjct: 302 gctcagatctgggataccgctggtcaggaaagatacagagccgttacaagcgcatactac 361
Query: 365 agagg 369
|||||
Sbjct: 362 agagg 366
>At3g15060.1 68416.m01905 Ras-related GTP-binding family protein similar to
GTP-binding protein GI:303742 from [Pisum sativum];
contains Pfam profile: PF00071 ras family
Length = 886
Score = 65.9 bits (33), Expect = 6e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 297 tcgtcaaagctcagatctgggacaccgccggtcaagagagatacagagc 345
||||||| |||||||| |||||||||||||| |||||||||||| ||||
Sbjct: 239 tcgtcaaggctcagatttgggacaccgccggccaagagagataccgagc 287
>At1g06400.1 68414.m00677 Ras-related GTP-binding protein (ARA-2) identical to
Ras-related protein ARA-2 SP:P28185 from [Arabidopsis
thaliana]
Length = 937
Score = 63.9 bits (32), Expect = 2e-09
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 290 ggcaaactcgtcaaagctcagatctgggacaccgccggtcaagagagatacagagc 345
|||||| |||||||||||||||| ||||| || || ||||||||||||||| ||||
Sbjct: 216 ggcaaagtcgtcaaagctcagatttgggatactgctggtcaagagagataccgagc 271
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,572
Number of Sequences: 29161
Number of extensions: 27572
Number of successful extensions: 614
Number of sequences better than 10.0: 63
length of query: 983
length of database: 44,058,232
effective HSP length: 18
effective length of query: 965
effective length of database: 43,533,334
effective search space: 42009667310
effective search space used: 42009667310
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)