BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.48.cl.4893.Contig1
         (328 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27410.1  68418.m03272 aminotransferase class IV family p...   620   e-177
At5g44160.1  68418.m05404 zinc finger (C2H2 type) family pro...    34   0.69 
At3g08570.1  68416.m00994 phototropic-responsive protein, pu...    34   0.69 
At2g37940.1  68415.m04657 expressed protein                        34   0.69 
At1g09450.1  68414.m01057 haspin-related similar to haspin (...    34   0.69 

>At5g27410.1 68418.m03272 aminotransferase class IV family protein contains Pfam
            profile: PF01063 aminotransferase class IV
          Length = 2023

 Score =  620 bits (313), Expect = e-177
 Identities = 326/329 (99%), Gaps = 1/329 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gtgtcccaatacctacttaccaagaagtcaagaaccttgaaccatgtgtttgatcgtaga 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1657 gtgtcccaatacctacttaccaagaagtcaagaaccttgaaccatgtgtttgatcgtaga 1716

                                                                        
Query: 61   acacgaatggaaaaaaacattgcatacgaggaaaacggca-gtatttcagaggaaagctg 119
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1717 acacgaatggaaaaaaacattgcatacgaggaaaacggcacgtatttcagaggaaagctg 1776

                                                                        
Query: 120  tggtgttttacgtttttgaatagaaagtgcgtcctgttttagctctcaaactatctcata 179
            |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 1777 tggtgttttacgtttttgaatagaaagtgcgtgctgttttagctctcaaactctctcata 1836

                                                                        
Query: 180  ttatgctgttgacctgttgtagcctgtgggtcaatgtaatcacagttggtcgcaaatcca 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1837 ttatgctgttgacctgttgtagcctgtgggtcaatgtaatcacagttggtcgcaaatcca 1896

                                                                        
Query: 240  agtcaagtcaggctctcttgtttgacttttcaatttttttttccacaataacgataatgc 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1897 agtcaagtcaggctctcttgtttgacttttcaatttttttttccacaataacgataatgc 1956

                                         
Query: 300  tgatcaataaacaaaaccataatatcatc 328
            |||||||||||||||||||||||||||||
Sbjct: 1957 tgatcaataaacaaaaccataatatcatc 1985



>At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein contains Pfam
           domain, PF00096: Zinc finger, C2H2 type
          Length = 1724

 Score = 34.2 bits (17), Expect = 0.69
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 20  ccaagaagtcaagaacc 36
           |||||||||||||||||
Sbjct: 123 ccaagaagtcaagaacc 139



>At3g08570.1 68416.m00994 phototropic-responsive protein, putative similar to root
            phototropism RPT2 [Arabidopsis thaliana]
            gi|6959488|gb|AAF33112, a signal transducer of
            phototropic response PMID:10662859
          Length = 1839

 Score = 34.2 bits (17), Expect = 0.69
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 230  cgcaaatccaagtcaag 246
            |||||||||||||||||
Sbjct: 1777 cgcaaatccaagtcaag 1793



>At2g37940.1 68415.m04657 expressed protein
          Length = 1531

 Score = 34.2 bits (17), Expect = 0.69
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 273  tttttttttccacaata 289
            |||||||||||||||||
Sbjct: 1530 tttttttttccacaata 1514



>At1g09450.1 68414.m01057 haspin-related similar to haspin (GI:9229937) {Mus
            musculus} and haploid germ cell-specific nuclear protein
            kinase (GI:13561418) {Mus musculus}
          Length = 2091

 Score = 34.2 bits (17), Expect = 0.69
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 14   tacttaccaagaagtca 30
            |||||||||||||||||
Sbjct: 1692 tacttaccaagaagtca 1708



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,209
Number of Sequences: 29161
Number of extensions: 10209
Number of successful extensions: 757
Number of sequences better than 10.0: 17
length of query: 328
length of database: 44,058,232
effective HSP length: 16
effective length of query: 312
effective length of database: 43,591,656
effective search space: 13600596672
effective search space used: 13600596672
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)