BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.48.cl.4887.Contig1
(530 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_356187.1| similar to hypothetical protein E330023O18... 32 4.9
gb|AAF09137.1| F-box protein FBX12 [Mus musculus] 32 4.9
gb|EAA21739.1| hypothetical protein [Plasmodium yoelii yoelii] 32 6.4
ref|NP_343688.1| Hypothetical protein SSO2325 [Sulfolobus s... 32 8.4
ref|XP_393215.1| similar to CG1244-PA [Apis mellifera] 32 8.4
ref|NP_700925.1| hypothetical protein [Plasmodium falciparu... 32 8.4
>ref|XP_356187.1| similar to hypothetical protein E330023O18 [Mus
musculus]|gi|47271358|ref|NP_056608.1| F-box only
protein 12 [Mus musculus]|gi|26352692|dbj|BAC39976.1|
unnamed protein product [Mus musculus]
Length = 466
Score = 32.3 bits (72), Expect = 4.9
Identities = 21/69 (30%), Positives = 29/69 (41%), Gaps = 10/69 (14%)
Frame = +3
Query: 297 SWKLFKPKETWHISHGTKFTDKRFNLPEI----------WYISRHETGRQEHGNGKPAIM 446
+WK F +TW T+ + F E WYISRH G +G GK A+
Sbjct: 65 TWKQFFFNKTWQEHAKTRAKPEDFTYKEFPMEFEFRAHPWYISRH--GLTRNGQGKSAVC 122
Query: 447 LDGRIRIKS 473
+ RI +
Sbjct: 123 MTSMNRIST 131
>gb|AAF09137.1| F-box protein FBX12 [Mus musculus]
Length = 144
Score = 32.3 bits (72), Expect = 4.9
Identities = 21/69 (30%), Positives = 29/69 (41%), Gaps = 10/69 (14%)
Frame = +3
Query: 297 SWKLFKPKETWHISHGTKFTDKRFNLPEI----------WYISRHETGRQEHGNGKPAIM 446
+WK F +TW T+ + F E WYISRH G +G GK A+
Sbjct: 69 TWKQFFFNKTWQEHAKTRAKPEDFTYKEFPMEFEFRAHPWYISRH--GLTRNGQGKSAVC 126
Query: 447 LDGRIRIKS 473
+ RI +
Sbjct: 127 MTSMNRIST 135
>gb|EAA21739.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 983
Score = 32.0 bits (71), Expect = 6.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 208 CCKPFIQQKHKENPQLNEKKLSNRQH--HLLYHGNYSNQKKHG 330
C + F H+ Q N K L N ++ +++ HGNY N KK+G
Sbjct: 100 CARSF----HRNKSQYNTKNLKNVKNKTNIITHGNYLNDKKNG 138
>ref|NP_343688.1| Hypothetical protein SSO2325 [Sulfolobus solfataricus
P2]|gi|25393608|pir||G90402 hypothetical protein SSO2325
[imported] - Sulfolobus
solfataricus|gi|13815624|gb|AAK42478.1| Hypothetical
protein SSO2325 [Sulfolobus solfataricus P2]
Length = 489
Score = 31.6 bits (70), Expect = 8.4
Identities = 14/71 (19%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Frame = -2
Query: 493 LTFFREGDFILILPSSMIAGFPLPCSCRPVSCRLMYQ-------ISGKLNLLSVNFVPWL 335
+TF+ ++ +LP S+++ F + + +S ++Y+ +S L +++ + + WL
Sbjct: 58 ITFYNYKKYVFLLPLSLLSFFSVSLTPLIISIFILYELKKVDRTVSIILLIINASMISWL 117
Query: 334 MCHVSFGLNSF 302
+ + G+N++
Sbjct: 118 ILRLLLGINTY 128
>ref|XP_393215.1| similar to CG1244-PA [Apis mellifera]
Length = 1833
Score = 31.6 bits (70), Expect = 8.4
Identities = 22/86 (25%), Positives = 40/86 (45%), Gaps = 3/86 (3%)
Frame = +1
Query: 208 CCKPFIQQKHKENPQLNEKKLSNR-QHHLLYHGNYSNQKKHGT*AMAQSS--PIKDLTYR 378
CC P QQ+ ++ Q +++ + QHH + Q++HGT +++S + +T
Sbjct: 354 CCDPNCQQQQQQQQQQQQQQQQQQVQHHHVQSSQTQQQQQHGTHNCSRTSGHSLHSVT-- 411
Query: 379 RFGT*VGMKPDDKNTATENQQSCWTA 456
D +TA E+ SC T+
Sbjct: 412 ---------SSDISTAAESVASCSTS 428
>ref|NP_700925.1| hypothetical protein [Plasmodium falciparum
3D7]|gi|23495986|gb|AAN35649.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1620
Score = 31.6 bits (70), Expect = 8.4
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 220 FIQQKHKENPQLNEKKLSNRQHHLLYHGNYSNQKKHGT*AMAQSSPIKDLTY 375
FIQQ+HK P + +K S Q++ + + +Y N+KK T + +K+ Y
Sbjct: 1044 FIQQQHKMYPNNSSQKYS-MQNYNINNNSYINEKKGNTQGSLNTLKVKEKMY 1094
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 117
effective length of database: 407,963,052
effective search space used: 24069820068
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)