BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_24544
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.8840.C1 nseq=14 595 e-170
At3g62510.F 34 0.56
PTA.sd.11120.C1 nseq=15 32 2.2
PTA.sd.11099.C1 nseq=14 32 2.2
At5g05390.F 32 2.2
PTA.sd.9945.C1 nseq=5 30 8.7
PTA.sd.9745.C1 nseq=23 30 8.7
PTA.sd.9615.C1 nseq=51 30 8.7
PTA.sd.7088.C1 nseq=19 30 8.7
PTA.sd.6686.C1 nseq=6 30 8.7
PTA.sd.6213.C1 nseq=3 30 8.7
PTA.sd.5534.C1 nseq=31 30 8.7
PTA.sd.4812.C1 nseq=4 30 8.7
PTA.sd.4471.C1 nseq=3 30 8.7
PTA.sd.3389.C1 nseq=9 30 8.7
>PTA.sd.8840.C1 nseq=14
Length = 2559
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 ttcaactttaatccatcttttcgtgatcccttcaccggcgcaaatgcttatgtgcctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1446 ttcaactttaatccatcttttcgtgatcccttcaccggcgcaaatgcttatgtgcctggg 1505
Query: 61 caagcatctcgtacagctgcaactccggcaaaacctttatacaagcacattccaaaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1506 caagcatctcgtacagctgcaactccggcaaaacctttatacaagcacattccaaaaaga 1565
Query: 121 ggtgtgctagttttcgatgctgctcaatatgacgggattctgaaaaagatgacagagttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1566 ggtgtgctagttttcgatgctgctcaatatgacgggattctgaaaaagatgacagagttc 1625
Query: 181 aatactactttacgatctgacgcagtaaacaatgacaagtccctgaccgaactcgaagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1626 aatactactttacgatctgacgcagtaaacaatgacaagtccctgaccgaactcgaagta 1685
Query: 241 tccagagtaggcgcaatcgttaatatactgaaggacacatcacactaccactctaccaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1686 tccagagtaggcgcaatcgttaatatactgaaggacacatcacactaccactctaccaat 1745
>At3g62510.F
Length = 282
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9 taatccatcttttcgtg 25
|||||||||||||||||
Sbjct: 281 taatccatcttttcgtg 265
>PTA.sd.11120.C1 nseq=15
Length = 3104
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 11 atccatcttttcgtga 26
||||||||||||||||
Sbjct: 218 atccatcttttcgtga 233
>PTA.sd.11099.C1 nseq=14
Length = 6712
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 21 tcgtgatcccttcaccggcgcaaa 44
||||||||||||||| || |||||
Sbjct: 3873 tcgtgatcccttcacaggagcaaa 3850
>At5g05390.F
Length = 1698
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 100 tacaagcacattccaa 115
||||||||||||||||
Sbjct: 1196 tacaagcacattccaa 1211
>PTA.sd.9945.C1 nseq=5
Length = 1753
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 cgggattctgaaaaa 167
|||||||||||||||
Sbjct: 996 cgggattctgaaaaa 982
>PTA.sd.9745.C1 nseq=23
Length = 3246
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 attccaaaaagaggt 123
|||||||||||||||
Sbjct: 888 attccaaaaagaggt 874
>PTA.sd.9615.C1 nseq=51
Length = 1856
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 30 cttcaccggcgcaaa 44
|||||||||||||||
Sbjct: 524 cttcaccggcgcaaa 510
>PTA.sd.7088.C1 nseq=19
Length = 1609
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 271 aaggacacatcacac 285
|||||||||||||||
Sbjct: 99 aaggacacatcacac 113
>PTA.sd.6686.C1 nseq=6
Length = 841
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 80 caactccggcaaaaccttt 98
||||| |||||||||||||
Sbjct: 38 caacttcggcaaaaccttt 20
>PTA.sd.6213.C1 nseq=3
Length = 1853
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 gacagagttcaatac 185
|||||||||||||||
Sbjct: 206 gacagagttcaatac 220
>PTA.sd.5534.C1 nseq=31
Length = 1529
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 90 aaaacctttatacaa 104
|||||||||||||||
Sbjct: 1129 aaaacctttatacaa 1115
>PTA.sd.4812.C1 nseq=4
Length = 1253
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 265 atactgaaggacaca 279
|||||||||||||||
Sbjct: 622 atactgaaggacaca 608
>PTA.sd.4471.C1 nseq=3
Length = 642
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 90 aaaacctttatacaa 104
|||||||||||||||
Sbjct: 485 aaaacctttatacaa 499
>PTA.sd.3389.C1 nseq=9
Length = 1272
Score = 30.2 bits (15), Expect = 8.7
Identities = 25/27 (92%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 165 aaagatgacagagttcaatactacttt 191
||||||||| ||||||||||| |||||
Sbjct: 1229 aaagatgac-gagttcaatacaacttt 1204
>PTA.sd.16980.C1 nseq=5
Length = 602
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 tcaactttaatccat 16
|||||||||||||||
Sbjct: 572 tcaactttaatccat 586
>PTA.sd.15693.C1 nseq=36
Length = 2861
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 109 attccaaaaagaggt 123
|||||||||||||||
Sbjct: 179 attccaaaaagaggt 193
>PTA.sd.15362.C1 nseq=2
Length = 1638
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 259 gttaatatactgaag 273
|||||||||||||||
Sbjct: 863 gttaatatactgaag 849
>PTA.sd.10798.C1 nseq=4
Length = 1216
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 133 ttcgatgctgctcaa 147
|||||||||||||||
Sbjct: 724 ttcgatgctgctcaa 710
>PTA.sd.1005.C1 nseq=12
Length = 4709
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 gaaaaagatgacaga 176
|||||||||||||||
Sbjct: 2321 gaaaaagatgacaga 2335
>orF111a.F
Length = 336
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 63 agcatctcgtacagc 77
|||||||||||||||
Sbjct: 66 agcatctcgtacagc 80
>At5g60270.F
Length = 2007
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 21 tcgtgatcccttcac 35
|||||||||||||||
Sbjct: 1919 tcgtgatcccttcac 1933
>At5g41390.F
Length = 894
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 78 tgcaactccggcaaa 92
|||||||||||||||
Sbjct: 32 tgcaactccggcaaa 46
>At5g17130.F
Length = 372
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 gcaaatgcttatgtg 54
|||||||||||||||
Sbjct: 232 gcaaatgcttatgtg 218
>At5g01140.F
Length = 1422
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 aaacctttatacaag 105
|||||||||||||||
Sbjct: 150 aaacctttatacaag 164
>At3g61420.F
Length = 1701
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 gaaaaagatgacaga 176
|||||||||||||||
Sbjct: 579 gaaaaagatgacaga 593
>At3g43930.F
Length = 1215
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 actttaatccatctt 19
|||||||||||||||
Sbjct: 211 actttaatccatctt 197
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)