BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_24450
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.12220.C1 nseq=12 507 e-143
PTA.sd.16407.C1 nseq=6 34 0.56
PTA.sd.15602.C1 nseq=34 34 0.56
PTA.sd.7047.C1 nseq=16 32 2.2
PTA.sd.6413.C1 nseq=5 32 2.2
PTA.sd.2110.C1 nseq=4 32 2.2
At3g46990.F 32 2.2
At1g35730.F 32 2.2
At1g27890.F 32 2.2
At1g27820.F 32 2.2
At4g39180.F PTA.sd.13790.singlet 30 8.7
PTA.sd.9934.C1 nseq=10 30 8.7
PTA.sd.9148.C1 nseq=11 30 8.7
PTA.sd.7757.C1 nseq=9 30 8.7
PTA.sd.7458.C1 nseq=15 30 8.7
>PTA.sd.12220.C1 nseq=12
Length = 1030
Score = 507 bits (256), Expect = e-143
Identities = 256/256 (100%)
Strand = Plus / Plus
Query: 45 tagtctttggattgggactttacgagttgttcatcagcaatctcgatacttcagagtcgc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tagtctttggattgggactttacgagttgttcatcagcaatctcgatacttcagagtcgc 629
Query: 105 gcacacacgatattgtttccaataggtcgagcctctttggcatgttcaccttaaaggagc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gcacacacgatattgtttccaataggtcgagcctctttggcatgttcaccttaaaggagc 689
Query: 165 gacctcaatggttagaggtgaaatcggtaagcgagctgaaaacaaagttgggacatgtaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gacctcaatggttagaggtgaaatcggtaagcgagctgaaaacaaagttgggacatgtaa 749
Query: 225 tagtgatgctactattgattggtttgtttgacaagagcaagagagtagtcataacttctg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tagtgatgctactattgattggtttgtttgacaagagcaagagagtagtcataacttctg 809
Query: 285 tcacggatttgctatg 300
||||||||||||||||
Sbjct: 810 tcacggatttgctatg 825
Score = 93.7 bits (47), Expect = 7e-19
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 1 ttcggtgaatcgtgggaaagtgatattccttttggttgaggccatag 47
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttcggtgaatcgtgggaaagtgatattccttttggttgaggccatag 542
>PTA.sd.16407.C1 nseq=6
Length = 2217
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 222 taatagtgatgctactattga 242
||||||||||| |||||||||
Sbjct: 2021 taatagtgatgttactattga 2001
>PTA.sd.15602.C1 nseq=34
Length = 1601
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 45 tagtctttggattggga 61
|||||||||||||||||
Sbjct: 657 tagtctttggattggga 641
>PTA.sd.7047.C1 nseq=16
Length = 996
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 238 attgattggtttgttt 253
||||||||||||||||
Sbjct: 787 attgattggtttgttt 802
>PTA.sd.6413.C1 nseq=5
Length = 1536
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 73 gttcatcagcaatctc 88
||||||||||||||||
Sbjct: 1145 gttcatcagcaatctc 1160
>PTA.sd.2110.C1 nseq=4
Length = 1929
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 51 ttggattgggacttta 66
||||||||||||||||
Sbjct: 1405 ttggattgggacttta 1420
>At3g46990.F
Length = 1644
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 241 gattggtttgtttgac 256
||||||||||||||||
Sbjct: 25 gattggtttgtttgac 10
>At1g35730.F
Length = 1695
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 251 tttgacaagagcaaga 266
||||||||||||||||
Sbjct: 1113 tttgacaagagcaaga 1098
>At1g27890.F
Length = 909
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 66 acgagttgttcatcagcaat 85
|||||||| |||||||||||
Sbjct: 726 acgagttgatcatcagcaat 745
>At1g27820.F
Length = 933
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 66 acgagttgttcatcagcaat 85
|||||||| |||||||||||
Sbjct: 741 acgagttgatcatcagcaat 760
>At4g39180.F PTA.sd.13790.singlet
Length = 1665
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 133 gagcctctttggcatgttc 151
||||||| |||||||||||
Sbjct: 1347 gagcctccttggcatgttc 1329
>PTA.sd.9934.C1 nseq=10
Length = 2262
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 251 tttgacaagagcaag 265
|||||||||||||||
Sbjct: 365 tttgacaagagcaag 351
>PTA.sd.9148.C1 nseq=11
Length = 1652
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 192 taagcgagctgaaaa 206
|||||||||||||||
Sbjct: 895 taagcgagctgaaaa 881
>PTA.sd.7757.C1 nseq=9
Length = 809
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 69 agttgttcatcagca 83
|||||||||||||||
Sbjct: 256 agttgttcatcagca 242
>PTA.sd.7458.C1 nseq=15
Length = 2757
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 252 ttgacaagagcaaga 266
|||||||||||||||
Sbjct: 400 ttgacaagagcaaga 414
>PTA.sd.607.C1 nseq=4
Length = 601
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 203 aaaacaaagttggga 217
|||||||||||||||
Sbjct: 481 aaaacaaagttggga 467
>PTA.sd.5838.C1 nseq=2
Length = 1716
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 74 ttcatcagcaatctc 88
|||||||||||||||
Sbjct: 546 ttcatcagcaatctc 532
>PTA.sd.5740.C1 nseq=3
Length = 7264
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 201 tgaaaacaaagttgg 215
|||||||||||||||
Sbjct: 734 tgaaaacaaagttgg 748
>PTA.sd.5525.C1 nseq=4
Length = 2216
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 6 tgaatcgtgggaaag 20
|||||||||||||||
Sbjct: 837 tgaatcgtgggaaag 851
>PTA.sd.5088.C1 nseq=3
Length = 1672
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 201 tgaaaacaaagttgggaca 219
||||||| |||||||||||
Sbjct: 1087 tgaaaaccaagttgggaca 1105
>PTA.sd.4326.C1 nseq=7
Length = 1240
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 235 actattgattggttt 249
|||||||||||||||
Sbjct: 510 actattgattggttt 496
>PTA.sd.3259.C1 nseq=5
Length = 4176
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 201 tgaaaacaaagttgg 215
|||||||||||||||
Sbjct: 1962 tgaaaacaaagttgg 1976
>PTA.sd.2970.C1 nseq=3
Length = 1979
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 259 gagcaagagagtagt 273
|||||||||||||||
Sbjct: 163 gagcaagagagtagt 149
>PTA.sd.27.C1 nseq=7
Length = 939
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 249 tgtttgacaagagca 263
|||||||||||||||
Sbjct: 236 tgtttgacaagagca 222
>PTA.sd.2480.C1 nseq=3
Length = 656
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 201 tgaaaacaaagttgg 215
|||||||||||||||
Sbjct: 337 tgaaaacaaagttgg 323
>PTA.sd.1879.C1 nseq=16
Length = 1096
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 252 ttgacaagagcaaga 266
|||||||||||||||
Sbjct: 681 ttgacaagagcaaga 695
>PTA.sd.17551.C1 nseq=7
Length = 2852
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 256 caagagcaagagagt 270
|||||||||||||||
Sbjct: 50 caagagcaagagagt 36
>PTA.sd.17043.C1 nseq=6
Length = 1882
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 138 tctttggcatgttca 152
|||||||||||||||
Sbjct: 1151 tctttggcatgttca 1165
>PTA.sd.16665.C1 nseq=15
Length = 740
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 agcgacctcaatggt 176
|||||||||||||||
Sbjct: 715 agcgacctcaatggt 729
>PTA.sd.15323.C1 nseq=5
Length = 1064
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 255 acaagagcaagagag 269
|||||||||||||||
Sbjct: 236 acaagagcaagagag 222
>PTA.sd.141.C1 nseq=27
Length = 4125
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 254 gacaagagcaagaga 268
|||||||||||||||
Sbjct: 908 gacaagagcaagaga 922
>PTA.sd.13496.C1 nseq=8
Length = 1667
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 168 ctcaatggttagaggtgaa 186
||||||||||| |||||||
Sbjct: 875 ctcaatggttacaggtgaa 893
>PTA.sd.11427.C1 nseq=7
Length = 3285
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 250 gtttgacaagagcaa 264
|||||||||||||||
Sbjct: 1706 gtttgacaagagcaa 1692
>PTA.sd.1051.C1 nseq=5
Length = 1734
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 236 ctattgattggtttgtttg 254
||||||||||||| |||||
Sbjct: 205 ctattgattggttcgtttg 223
>At5g12400.F
Length = 4788
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 281 tctgtcacggatttg 295
|||||||||||||||
Sbjct: 406 tctgtcacggatttg 420
>At4g21240.F
Length = 1254
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 235 actattgattggttt 249
|||||||||||||||
Sbjct: 1183 actattgattggttt 1197
>At4g07540.F
Length = 1452
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 86 ctcgatacttcagag 100
|||||||||||||||
Sbjct: 715 ctcgatacttcagag 701
>At1g64540.F
Length = 1335
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 73 gttcatcagcaatct 87
|||||||||||||||
Sbjct: 15 gttcatcagcaatct 29
>At1g26290.F
Length = 429
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 257 aagagcaagagagta 271
|||||||||||||||
Sbjct: 211 aagagcaagagagta 225
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)