BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_24356
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.11182.C1 nseq=17 595 e-170
At4g04280.F 38 0.036
PTA.sd.5897.C1 nseq=10 36 0.14
PTA.sd.17630.C1 nseq=7 34 0.56
PTA.sd.655.C1 nseq=4 32 2.2
PTA.sd.17836.C1 nseq=5 32 2.2
PTA.sd.13415.C1 nseq=7 32 2.2
At5g17890.F PTA.sd.15108.singlet 30 8.7
At3g50590.F PTA.sd.10062.singlet 30 8.7
At3g03640.F PTA.sd.7669.singlet 30 8.7
PTA.sd.9467.C1 nseq=17 30 8.7
PTA.sd.7243.C1 nseq=16 30 8.7
PTA.sd.4673.C1 nseq=6 30 8.7
PTA.sd.3664.C1 nseq=23 30 8.7
PTA.sd.3658.C1 nseq=2 30 8.7
>PTA.sd.11182.C1 nseq=17
Length = 1309
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 ttgttcatacaaatcgtagagaacctgatgcgcttcttatcatcggtttgccaaatggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttgttcatacaaatcgtagagaacctgatgcgcttcttatcatcggtttgccaaatggtc 669
Query: 61 ctactgctcatttcaaattgtcaaatcttgttctaaggaaggatattaagaatcacggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ctactgctcatttcaaattgtcaaatcttgttctaaggaaggatattaagaatcacggaa 729
Query: 121 atcctacaagccatcaaccagaactggttttgaataactttacaacgcgtttagggaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 atcctacaagccatcaaccagaactggttttgaataactttacaacgcgtttagggaatc 789
Query: 181 gtgttgggagattttttcaatcactcttccctccggatcctaatttccgtggtaggagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gtgttgggagattttttcaatcactcttccctccggatcctaatttccgtggtaggagag 849
Query: 241 ttgtaacattccacaaccagcgtgactttatatttttcagacatcaccgttacatatttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 ttgtaacattccacaaccagcgtgactttatatttttcagacatcaccgttacatatttg 909
>At4g04280.F
Length = 3315
Score = 38.2 bits (19), Expect = 0.036
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 tgctcatttcaaattgtca 83
|||||||||||||||||||
Sbjct: 2745 tgctcatttcaaattgtca 2763
>PTA.sd.5897.C1 nseq=10
Length = 912
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 84 aatcttgttctaaggaag 101
||||||||||||||||||
Sbjct: 673 aatcttgttctaaggaag 690
>PTA.sd.17630.C1 nseq=7
Length = 1122
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 40 tcatcggtttgccaaat 56
|||||||||||||||||
Sbjct: 981 tcatcggtttgccaaat 997
>PTA.sd.655.C1 nseq=4
Length = 1140
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 243 gtaacattccacaacc 258
||||||||||||||||
Sbjct: 65 gtaacattccacaacc 80
>PTA.sd.17836.C1 nseq=5
Length = 2048
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 208 tccctccggatcctaa 223
||||||||||||||||
Sbjct: 440 tccctccggatcctaa 455
>PTA.sd.13415.C1 nseq=7
Length = 1833
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 190 gattttttcaatcact 205
||||||||||||||||
Sbjct: 454 gattttttcaatcact 469
>At5g17890.F PTA.sd.15108.singlet
Length = 4728
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 183 gttgggagattttttcaat 201
|||| ||||||||||||||
Sbjct: 2803 gttgagagattttttcaat 2821
>At3g50590.F PTA.sd.10062.singlet
Length = 2073
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 89 tgttctaaggaagga 103
|||||||||||||||
Sbjct: 1134 tgttctaaggaagga 1120
>At3g03640.F PTA.sd.7669.singlet
Length = 1596
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 111 aatcacggaaatcct 125
|||||||||||||||
Sbjct: 547 aatcacggaaatcct 533
>PTA.sd.9467.C1 nseq=17
Length = 1191
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 267 tttatatttttcaga 281
|||||||||||||||
Sbjct: 38 tttatatttttcaga 24
>PTA.sd.7243.C1 nseq=16
Length = 2294
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 tccggatcctaattt 226
|||||||||||||||
Sbjct: 300 tccggatcctaattt 314
>PTA.sd.4673.C1 nseq=6
Length = 1961
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 18 agagaacctgatgcgcttc 36
|||||||||||| ||||||
Sbjct: 251 agagaacctgattcgcttc 233
>PTA.sd.3664.C1 nseq=23
Length = 1417
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 250 tccacaaccagcgtg 264
|||||||||||||||
Sbjct: 983 tccacaaccagcgtg 969
>PTA.sd.3658.C1 nseq=2
Length = 1634
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 aaccagaactggttt 150
|||||||||||||||
Sbjct: 538 aaccagaactggttt 552
>PTA.sd.3191.C1 nseq=19
Length = 3029
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 145 tggttttgaataact 159
|||||||||||||||
Sbjct: 1919 tggttttgaataact 1905
>PTA.sd.23.C1 nseq=3
Length = 968
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 152 gaataactttacaac 166
|||||||||||||||
Sbjct: 443 gaataactttacaac 429
>PTA.sd.18038.C1 nseq=5
Length = 1418
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 33 cttcttatcatcggt 47
|||||||||||||||
Sbjct: 1018 cttcttatcatcggt 1004
>PTA.sd.17.C1 nseq=2
Length = 3849
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 198 caatcactcttccct 212
|||||||||||||||
Sbjct: 1408 caatcactcttccct 1394
>PTA.sd.1503.C1 nseq=7
Length = 1348
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 118 gaaatcctacaagcc 132
|||||||||||||||
Sbjct: 1100 gaaatcctacaagcc 1086
>PTA.sd.14907.C1 nseq=39
Length = 649
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 186 gggagattttttcaa 200
|||||||||||||||
Sbjct: 447 gggagattttttcaa 433
>PTA.sd.14150.C1 nseq=13
Length = 1983
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 267 tttatatttttcaga 281
|||||||||||||||
Sbjct: 1943 tttatatttttcaga 1957
>PTA.sd.1371.C1 nseq=3
Length = 2192
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 266 ctttatatttttcag 280
|||||||||||||||
Sbjct: 499 ctttatatttttcag 485
>PTA.sd.1335.C1 nseq=7
Length = 847
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 284 tcaccgttacatatt 298
|||||||||||||||
Sbjct: 417 tcaccgttacatatt 431
>PTA.sd.12631.C1 nseq=2
Length = 3270
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 ggagattttttcaat 201
|||||||||||||||
Sbjct: 1797 ggagattttttcaat 1783
>PTA.sd.12387.C1 nseq=20
Length = 1984
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 51 ccaaatggtcctact 65
|||||||||||||||
Sbjct: 1016 ccaaatggtcctact 1030
>PTA.sd.10057.C1 nseq=12
Length = 1473
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 92 tctaaggaaggatat 106
|||||||||||||||
Sbjct: 62 tctaaggaaggatat 48
>At5g49430.F
Length = 4731
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 ggtttgccaaatggt 59
|||||||||||||||
Sbjct: 3025 ggtttgccaaatggt 3039
>At5g34870.F
Length = 1551
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 175 ggaatcgtgttgggagatt 193
|||||| ||||||||||||
Sbjct: 714 ggaatcatgttgggagatt 732
>At1g73020.F
Length = 1677
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 104 tattaagaatcacggaaat 122
||||||||||| |||||||
Sbjct: 573 tattaagaatctcggaaat 591
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)