BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_24262
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.6490.C1 nseq=17 595 e-170
PTA.sd.4329.C1 nseq=8 42 0.002
PTA.sd.1490.C1 nseq=3 36 0.14
PTA.sd.16783.C1 nseq=9 34 0.56
PTA.sd.10231.C1 nseq=8 34 0.56
PTA.sd.9424.C1 nseq=2 32 2.2
PTA.sd.595.C1 nseq=10 32 2.2
PTA.sd.3874.C1 nseq=5 32 2.2
PTA.sd.2682.C1 nseq=4 32 2.2
PTA.sd.17154.C1 nseq=3 32 2.2
PTA.sd.16790.C1 nseq=9 32 2.2
PTA.sd.119.C1 nseq=9 32 2.2
At5g51050.F 32 2.2
At2g23300.F 32 2.2
At4g15530.F PTA.sd.11920.singlet 30 8.7
>PTA.sd.6490.C1 nseq=17
Length = 1187
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 ggatatttcgcttctggaaccttcttctcctaaagtctcttgcatcggtagagtgagatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggatatttcgcttctggaaccttcttctcctaaagtctcttgcatcggtagagtgagatc 556
Query: 61 cagaagagaacgcagccgccgtatgcaccgtcaaaaatcaagtcgggtcgaaccggtaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cagaagagaacgcagccgccgtatgcaccgtcaaaaatcaagtcgggtcgaaccggtaaa 616
Query: 121 ccgggttaagaaacccgggtttatggcgagtttcagagctattttcaggatcaaaggcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccgggttaagaaacccgggtttatggcgagtttcagagctattttcaggatcaaaggcgg 676
Query: 181 ctgcaaagacgtgtcagcgcgtgagactcacacgtcgacgagaaacacacacgacatcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctgcaaagacgtgtcagcgcgtgagactcacacgtcgacgagaaacacacacgacatcag 736
Query: 241 gagccgacttcctgcggaagctgatgagaagtcggtattcgacggcggagaaccggtggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gagccgacttcctgcggaagctgatgagaagtcggtattcgacggcggagaaccggtggt 796
>PTA.sd.4329.C1 nseq=8
Length = 1229
Score = 42.1 bits (21), Expect = 0.002
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 17 gaaccttcttctcctaaagtctcttgcatcggt 49
|||||| |||| |||||||||||||| ||||||
Sbjct: 478 gaacctacttcacctaaagtctcttgtatcggt 510
>PTA.sd.1490.C1 nseq=3
Length = 919
Score = 36.2 bits (18), Expect = 0.14
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 24 cttctcctaaagtctcttgcatcggt 49
|||| ||||||||||| |||||||||
Sbjct: 245 cttcgcctaaagtctcctgcatcggt 270
>PTA.sd.16783.C1 nseq=9
Length = 2019
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 152 ttcagagctattttcag 168
|||||||||||||||||
Sbjct: 1236 ttcagagctattttcag 1220
>PTA.sd.10231.C1 nseq=8
Length = 1360
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 152 ttcagagctattttcag 168
|||||||||||||||||
Sbjct: 640 ttcagagctattttcag 656
>PTA.sd.9424.C1 nseq=2
Length = 927
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 256 ggaagctgatgagaag 271
||||||||||||||||
Sbjct: 414 ggaagctgatgagaag 429
>PTA.sd.595.C1 nseq=10
Length = 1406
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 11 cttctggaaccttctt 26
||||||||||||||||
Sbjct: 374 cttctggaaccttctt 389
>PTA.sd.3874.C1 nseq=5
Length = 2466
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 276 tattcgacggcggaga 291
||||||||||||||||
Sbjct: 379 tattcgacggcggaga 364
>PTA.sd.2682.C1 nseq=4
Length = 2392
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 58 atccagaagagaacgcagcc 77
||||||||||||| ||||||
Sbjct: 771 atccagaagagaaagcagcc 752
>PTA.sd.17154.C1 nseq=3
Length = 691
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 18 aaccttcttctcctaa 33
||||||||||||||||
Sbjct: 300 aaccttcttctcctaa 315
>PTA.sd.16790.C1 nseq=9
Length = 1180
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 218 acgagaaacacacacg 233
||||||||||||||||
Sbjct: 53 acgagaaacacacacg 68
>PTA.sd.119.C1 nseq=9
Length = 1047
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 280 cgacggcggagaaccggtgg 299
||||||||||||| ||||||
Sbjct: 417 cgacggcggagaagcggtgg 398
>At5g51050.F
Length = 1464
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 119 aaccgggttaagaaacccgg 138
|||| |||||||||||||||
Sbjct: 37 aacccggttaagaaacccgg 56
>At2g23300.F
Length = 2322
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 130 gaaacccgggtttatg 145
||||||||||||||||
Sbjct: 818 gaaacccgggtttatg 833
>At4g15530.F PTA.sd.11920.singlet
Length = 2883
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 tttatggcgagtttc 154
|||||||||||||||
Sbjct: 995 tttatggcgagtttc 1009
>At1g54330.F PTA.sd.2946.singlet
Length = 897
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 256 ggaagctgatgagaa 270
|||||||||||||||
Sbjct: 740 ggaagctgatgagaa 726
>PTA.sd.7985.C1 nseq=9
Length = 2858
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 15 tggaaccttcttctc 29
|||||||||||||||
Sbjct: 2449 tggaaccttcttctc 2435
>PTA.sd.680.C1 nseq=5
Length = 1570
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 tctggaaccttcttc 27
|||||||||||||||
Sbjct: 1131 tctggaaccttcttc 1145
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 tctggaaccttcttc 27
|||||||||||||||
Sbjct: 879 tctggaaccttcttc 893
>PTA.sd.6018.C1 nseq=7
Length = 1133
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 9 cgcttctggaaccttcttc 27
||||||| |||||||||||
Sbjct: 159 cgcttctagaaccttcttc 141
>PTA.sd.5699.C1 nseq=6
Length = 1634
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 258 aagctgatgagaagt 272
|||||||||||||||
Sbjct: 278 aagctgatgagaagt 292
>PTA.sd.4873.C1 nseq=6
Length = 1726
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 256 ggaagctgatgagaa 270
|||||||||||||||
Sbjct: 577 ggaagctgatgagaa 591
>PTA.sd.2873.C1 nseq=22
Length = 1426
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 276 tattcgacggcggag 290
|||||||||||||||
Sbjct: 175 tattcgacggcggag 161
>PTA.sd.2336.C1 nseq=17
Length = 2243
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 agatccagaagagaa 70
|||||||||||||||
Sbjct: 142 agatccagaagagaa 128
>PTA.sd.2315.C1 nseq=4
Length = 1960
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 18 aaccttcttctccta 32
|||||||||||||||
Sbjct: 357 aaccttcttctccta 371
>PTA.sd.17835.C1 nseq=3
Length = 1796
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 16 ggaaccttcttctcc 30
|||||||||||||||
Sbjct: 224 ggaaccttcttctcc 210
>PTA.sd.17651.C1 nseq=5
Length = 1437
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 258 aagctgatgagaagt 272
|||||||||||||||
Sbjct: 829 aagctgatgagaagt 815
>PTA.sd.17411.C1 nseq=6
Length = 789
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 216 cgacgagaaacacac 230
|||||||||||||||
Sbjct: 461 cgacgagaaacacac 447
>PTA.sd.15761.C1 nseq=8
Length = 3472
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 257 gaagctgatgagaag 271
|||||||||||||||
Sbjct: 471 gaagctgatgagaag 485
>PTA.sd.15605.C1 nseq=2
Length = 1494
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 20 ccttcttctcctaaa 34
|||||||||||||||
Sbjct: 45 ccttcttctcctaaa 59
>PTA.sd.1479.C1 nseq=33
Length = 1689
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 26 tctcctaaagtctct 40
|||||||||||||||
Sbjct: 620 tctcctaaagtctct 634
>PTA.sd.11584.C1 nseq=8
Length = 1462
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 ggtcgaaccggtaaa 120
|||||||||||||||
Sbjct: 1337 ggtcgaaccggtaaa 1351
>PTA.sd.11173.C1 nseq=2
Length = 3387
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 90 gtcaaaaatcaagtc 104
|||||||||||||||
Sbjct: 2265 gtcaaaaatcaagtc 2279
>PTA.sd.10619.C1 nseq=2
Length = 5015
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 54 tgagatccagaagagaacg 72
|||||||||||| ||||||
Sbjct: 2654 tgagatccagaatagaacg 2672
>At5g54350.F
Length = 840
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 agagtgagatccaga 64
|||||||||||||||
Sbjct: 374 agagtgagatccaga 360
>At5g47280.F
Length = 1872
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 170 atcaaaggcggctgc 184
|||||||||||||||
Sbjct: 783 atcaaaggcggctgc 769
>At5g21080.F
Length = 2943
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 250 tcctgcggaagctga 264
|||||||||||||||
Sbjct: 720 tcctgcggaagctga 734
>At4g01380.F
Length = 633
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 21 cttcttctcctaaag 35
|||||||||||||||
Sbjct: 176 cttcttctcctaaag 190
>At3g61450.F
Length = 792
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 276 tattcgacggcggag 290
|||||||||||||||
Sbjct: 134 tattcgacggcggag 120
>At1g60020.F
Length = 3585
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 219 cgagaaacacacacg 233
|||||||||||||||
Sbjct: 2023 cgagaaacacacacg 2009
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)