BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_24168
(220 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g53900.F 436 e-122
PTA.sd.2911.C1 nseq=8 422 e-118
PTA.sd.4054.C1 nseq=12 143 6e-34
PTA.sd.13331.C1 nseq=2 34 0.40
PTA.sd.9270.C1 nseq=5 32 1.6
PTA.sd.8596.C2 nseq=3 32 1.6
PTA.sd.8247.C1 nseq=5 32 1.6
PTA.sd.7604.C1 nseq=8 32 1.6
PTA.sd.17265.C1 nseq=2 32 1.6
PTA.sd.17189.C1 nseq=14 32 1.6
PTA.sd.16214.C1 nseq=9 32 1.6
PTA.sd.14040.C1 nseq=18 32 1.6
At2g47300.F 32 1.6
At1g58210.F PTA.sd.3137.singlet 30 6.3
PTA.sd.8933.C1 nseq=38 30 6.3
>At1g53900.F
Length = 1914
Score = 436 bits (220), Expect = e-122
Identities = 220/220 (100%)
Strand = Plus / Plus
Query: 1 gtgtactgctagctaacgagcttgcaaaacttgatattcctgtgaagcttctgatcgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1487 gtgtactgctagctaacgagcttgcaaaacttgatattcctgtgaagcttctgatcgatt 1546
Query: 61 cagccgtggcctatagcatggatgaagtagacatggtgtttgttggagctgatggagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1547 cagccgtggcctatagcatggatgaagtagacatggtgtttgttggagctgatggagtag 1606
Query: 121 ttgaaagtggcgggataattaacatgatgggaacttaccaaatcgccctagtcgcacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1607 ttgaaagtggcgggataattaacatgatgggaacttaccaaatcgccctagtcgcacaga 1666
Query: 181 gtatgaataaaccagtctatgtagctgcagagagttacaa 220
||||||||||||||||||||||||||||||||||||||||
Sbjct: 1667 gtatgaataaaccagtctatgtagctgcagagagttacaa 1706
>PTA.sd.2911.C1 nseq=8
Length = 2131
Score = 422 bits (213), Expect = e-118
Identities = 220/221 (99%), Gaps = 1/221 (0%)
Strand = Plus / Plus
Query: 1 gtgtactgctagctaacgagcttgcaaaacttgatattcctgtgaagcttctgatcgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1487 gtgtactgctagctaacgagcttgcaaaacttgatattcctgtgaagcttctgatcgatt 1546
Query: 61 cagccgtggcc-tatagcatggatgaagtagacatggtgtttgttggagctgatggagta 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1547 cagccgtggccctatagcatggatgaagtagacatggtgtttgttggagctgatggagta 1606
Query: 120 gttgaaagtggcgggataattaacatgatgggaacttaccaaatcgccctagtcgcacag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1607 gttgaaagtggcgggataattaacatgatgggaacttaccaaatcgccctagtcgcacag 1666
Query: 180 agtatgaataaaccagtctatgtagctgcagagagttacaa 220
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1667 agtatgaataaaccagtctatgtagctgcagagagttacaa 1707
>PTA.sd.4054.C1 nseq=12
Length = 1297
Score = 143 bits (72), Expect = 6e-34
Identities = 141/164 (85%)
Strand = Plus / Plus
Query: 57 gattcagccgtggcctatagcatggatgaagtagacatggtgtttgttggagctgatgga 116
|||||||| ||||| ||||| ||||| || ||||||||||||||||| || || ||||||
Sbjct: 796 gattcagctgtggcgtatagtatggacgaggtagacatggtgtttgtcggggcggatgga 855
Query: 117 gtagttgaaagtggcgggataattaacatgatgggaacttaccaaatcgccctagtcgca 176
|| || ||||||||||| || || |||||||||||||| ||||||||||| || || |||
Sbjct: 856 gttgtagaaagtggcggtattatcaacatgatgggaacataccaaatcgcacttgtggca 915
Query: 177 cagagtatgaataaaccagtctatgtagctgcagagagttacaa 220
|| || ||||| ||||| |||||||| ||||| |||||||||||
Sbjct: 916 cacagcatgaacaaaccggtctatgttgctgctgagagttacaa 959
>PTA.sd.13331.C1 nseq=2
Length = 2109
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 199 atgtagctgcagagagt 215
|||||||||||||||||
Sbjct: 601 atgtagctgcagagagt 585
>PTA.sd.9270.C1 nseq=5
Length = 938
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 44 gaagcttctgatcgat 59
||||||||||||||||
Sbjct: 625 gaagcttctgatcgat 640
>PTA.sd.8596.C2 nseq=3
Length = 1827
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 48 cttctgatcgattcag 63
||||||||||||||||
Sbjct: 1268 cttctgatcgattcag 1283
>PTA.sd.8247.C1 nseq=5
Length = 1137
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 99 tttgttggagctgatg 114
||||||||||||||||
Sbjct: 110 tttgttggagctgatg 125
>PTA.sd.7604.C1 nseq=8
Length = 1279
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 48 cttctgatcgattcag 63
||||||||||||||||
Sbjct: 490 cttctgatcgattcag 475
>PTA.sd.17265.C1 nseq=2
Length = 3039
Score = 32.2 bits (16), Expect = 1.6
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 44 gaagcttctgatcgattcag 63
||||| ||||||||||||||
Sbjct: 2769 gaagcctctgatcgattcag 2750
>PTA.sd.17189.C1 nseq=14
Length = 1669
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 108 gctgatggagtagttg 123
||||||||||||||||
Sbjct: 522 gctgatggagtagttg 507
>PTA.sd.16214.C1 nseq=9
Length = 2537
Score = 32.2 bits (16), Expect = 1.6
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 36 attcctgtgaagcttctgat 55
||||| ||||||||||||||
Sbjct: 413 attccggtgaagcttctgat 394
>PTA.sd.14040.C1 nseq=18
Length = 1472
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 48 cttctgatcgattcag 63
||||||||||||||||
Sbjct: 1409 cttctgatcgattcag 1394
>At2g47300.F
Length = 1035
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 19 agcttgcaaaacttga 34
||||||||||||||||
Sbjct: 47 agcttgcaaaacttga 62
>At1g58210.F PTA.sd.3137.singlet
Length = 3588
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 32 tgatattcctgtgaa 46
|||||||||||||||
Sbjct: 510 tgatattcctgtgaa 524
>PTA.sd.8933.C1 nseq=38
Length = 1852
Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 178 agagtatgaataaaccagt 196
|||| ||||||||||||||
Sbjct: 1730 agagaatgaataaaccagt 1712
>PTA.sd.8446.C1 nseq=7
Length = 2083
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 100 ttgttggagctgatg 114
|||||||||||||||
Sbjct: 1666 ttgttggagctgatg 1652
>PTA.sd.8038.C1 nseq=52
Length = 1990
Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 39 cctgtgaagcttctgatcg 57
||||||||||| |||||||
Sbjct: 1425 cctgtgaagctgctgatcg 1443
>PTA.sd.7997.C1 nseq=11
Length = 1833
Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 78 atggatgaagtagacatgg 96
||||||||||| |||||||
Sbjct: 767 atggatgaagttgacatgg 785
>PTA.sd.7499.C1 nseq=9
Length = 2628
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 99 tttgttggagctgat 113
|||||||||||||||
Sbjct: 1366 tttgttggagctgat 1380
>PTA.sd.6850.C1 nseq=3
Length = 1994
Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 14 taacgagcttgcaaaactt 32
|||||| ||||||||||||
Sbjct: 723 taacgatcttgcaaaactt 741
>PTA.sd.5868.C1 nseq=3
Length = 2428
Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 105 ggagctgatggagtagttg 123
|||| ||||||||||||||
Sbjct: 2219 ggaggtgatggagtagttg 2201
>PTA.sd.4211.C1 nseq=106
Length = 1661
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 103 ttggagctgatggag 117
|||||||||||||||
Sbjct: 710 ttggagctgatggag 724
>PTA.sd.2950.C1 nseq=3
Length = 1759
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 ctgtgaagcttctga 54
|||||||||||||||
Sbjct: 903 ctgtgaagcttctga 889
>PTA.sd.2595.C1 nseq=8
Length = 4209
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 caaaacttgatattc 39
|||||||||||||||
Sbjct: 3288 caaaacttgatattc 3302
>PTA.sd.239.C1 nseq=2
Length = 4560
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 151 gaacttaccaaatcg 165
|||||||||||||||
Sbjct: 657 gaacttaccaaatcg 643
>PTA.sd.17764.C1 nseq=11
Length = 1844
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 acagagtatgaataa 190
|||||||||||||||
Sbjct: 1025 acagagtatgaataa 1011
>PTA.sd.17553.C1 nseq=7
Length = 1147
Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 67 tggcctatagcatggatga 85
|||| ||||||||||||||
Sbjct: 203 tggcttatagcatggatga 221
>PTA.sd.16662.C1 nseq=9
Length = 965
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 198 tatgtagctgcagag 212
|||||||||||||||
Sbjct: 78 tatgtagctgcagag 92
>PTA.sd.16645.C1 nseq=49
Length = 1880
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 31 ttgatattcctgtga 45
|||||||||||||||
Sbjct: 452 ttgatattcctgtga 466
>PTA.sd.1654.C1 nseq=5
Length = 1347
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 27 aaacttgatattcct 41
|||||||||||||||
Sbjct: 1035 aaacttgatattcct 1049
>PTA.sd.16407.C1 nseq=6
Length = 2217
Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 99 tttgttggagctgatggag 117
|||||| ||||||||||||
Sbjct: 1027 tttgttcgagctgatggag 1045
>PTA.sd.12166.C1 nseq=3
Length = 5673
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 84 gaagtagacatggtg 98
|||||||||||||||
Sbjct: 5423 gaagtagacatggtg 5437
>PTA.sd.12075.C1 nseq=4
Length = 1168
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 19 agcttgcaaaacttg 33
|||||||||||||||
Sbjct: 703 agcttgcaaaacttg 717
>PTA.sd.10563.C1 nseq=7
Length = 2073
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 111 gatggagtagttgaa 125
|||||||||||||||
Sbjct: 660 gatggagtagttgaa 646
>PTA.sd.10485.C1 nseq=5
Length = 1928
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 69 gcctatagcatggat 83
|||||||||||||||
Sbjct: 1206 gcctatagcatggat 1192
>PTA.sd.1024.C1 nseq=4
Length = 1674
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 gatggagtagttgaa 125
|||||||||||||||
Sbjct: 853 gatggagtagttgaa 867
>At5g65820.F
Length = 1914
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 103 ttggagctgatggag 117
|||||||||||||||
Sbjct: 1234 ttggagctgatggag 1248
>At5g51530.F
Length = 3450
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 21 cttgcaaaacttgat 35
|||||||||||||||
Sbjct: 1120 cttgcaaaacttgat 1134
>At5g27530.F
Length = 1245
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 103 ttggagctgatggag 117
|||||||||||||||
Sbjct: 662 ttggagctgatggag 676
>At5g22010.F
Length = 2871
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 77 catggatgaagtaga 91
|||||||||||||||
Sbjct: 1419 catggatgaagtaga 1433
>At4g31690.F
Length = 1386
Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 82 atgaagtagacatggtgtt 100
|||||| ||||||||||||
Sbjct: 266 atgaaggagacatggtgtt 284
>At2g29840.F
Length = 933
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 19 agcttgcaaaacttg 33
|||||||||||||||
Sbjct: 666 agcttgcaaaacttg 652
>At2g18970.F
Length = 189
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 82 atgaagtagacatgg 96
|||||||||||||||
Sbjct: 24 atgaagtagacatgg 10
>At2g14730.F
Length = 354
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 cgagcttgcaaaact 31
|||||||||||||||
Sbjct: 320 cgagcttgcaaaact 306
>At1g43590.F
Length = 507
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 cgagcttgcaaaact 31
|||||||||||||||
Sbjct: 188 cgagcttgcaaaact 174
>At1g42690.F
Length = 1002
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 cgagcttgcaaaact 31
|||||||||||||||
Sbjct: 683 cgagcttgcaaaact 669
>At1g04600.F
Length = 5193
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 150 ggaacttaccaaatc 164
|||||||||||||||
Sbjct: 3504 ggaacttaccaaatc 3490
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 220
length of database: 39,126,732
effective HSP length: 16
effective length of query: 204
effective length of database: 38,700,540
effective search space: 7894910160
effective search space used: 7894910160
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)