BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_24074
(284 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60410.F 563 e-160
PTA.sd.714.C1 nseq=6 34 0.53
PTA.sd.17168.C1 nseq=8 34 0.53
PTA.sd.16220.C1 nseq=13 34 0.53
PTA.sd.13036.C1 nseq=5 34 0.53
PTA.sd.12617.C1 nseq=8 34 0.53
PTA.sd.12050.C1 nseq=6 34 0.53
At2g34920.F 34 0.53
PTA.sd.9543.C1 nseq=2 32 2.1
PTA.sd.6872.C1 nseq=10 32 2.1
PTA.sd.5151.C1 nseq=11 32 2.1
PTA.sd.16555.C1 nseq=9 32 2.1
PTA.sd.10807.C1 nseq=16 32 2.1
PTA.sd.10036.C1 nseq=4 32 2.1
At1g21990.F 32 2.1
>At1g60410.F
Length = 1221
Score = 563 bits (284), Expect = e-160
Identities = 284/284 (100%)
Strand = Plus / Plus
Query: 1 ttgagggggtcaagtttgatggtgattctgttctggagactctcatatcgcatagtccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttgagggggtcaagtttgatggtgattctgttctggagactctcatatcgcatagtccgg 562
Query: 61 ttcttgaggagttaaccgtgattccgcatccggaggattatttggaagtcatatgtgttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttcttgaggagttaaccgtgattccgcatccggaggattatttggaagtcatatgtgttc 622
Query: 121 gttctcaatcactggagagctttagacttgagtctaagcgttttgagtgtgacaatccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gttctcaatcactggagagctttagacttgagtctaagcgttttgagtgtgacaatccca 682
Query: 181 aagttgaaatcgattctccaagccttgagtttatgagtatctgtgataagaaacctgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aagttgaaatcgattctccaagccttgagtttatgagtatctgtgataagaaacctgaaa 742
Query: 241 gccttaaaatacatagaattggtccttttgcggaggtaaccgtt 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gccttaaaatacatagaattggtccttttgcggaggtaaccgtt 786
>PTA.sd.714.C1 nseq=6
Length = 1272
Score = 34.2 bits (17), Expect = 0.53
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 109 tcatatgtgttcgttct 125
|||||||||||||||||
Sbjct: 1164 tcatatgtgttcgttct 1180
>PTA.sd.17168.C1 nseq=8
Length = 2372
Score = 34.2 bits (17), Expect = 0.53
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 234 cctgaaagccttaaaat 250
|||||||||||||||||
Sbjct: 760 cctgaaagccttaaaat 744
>PTA.sd.16220.C1 nseq=13
Length = 4222
Score = 34.2 bits (17), Expect = 0.53
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 200 aagccttgagtttatga 216
|||||||||||||||||
Sbjct: 3313 aagccttgagtttatga 3297
>PTA.sd.13036.C1 nseq=5
Length = 1143
Score = 34.2 bits (17), Expect = 0.53
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 223 gtgataagaaacctgaa 239
|||||||||||||||||
Sbjct: 169 gtgataagaaacctgaa 185
>PTA.sd.12617.C1 nseq=8
Length = 1092
Score = 34.2 bits (17), Expect = 0.53
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 249 atacatagaattggtcctttt 269
|||||||||||| ||||||||
Sbjct: 1062 atacatagaatttgtcctttt 1042
>PTA.sd.12050.C1 nseq=6
Length = 1796
Score = 34.2 bits (17), Expect = 0.53
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10 tcaagtttgatggtgat 26
|||||||||||||||||
Sbjct: 953 tcaagtttgatggtgat 969
>At2g34920.F
Length = 2358
Score = 34.2 bits (17), Expect = 0.53
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 58 cggttcttgaggagtta 74
|||||||||||||||||
Sbjct: 1542 cggttcttgaggagtta 1526
>PTA.sd.9543.C1 nseq=2
Length = 1533
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 90 ccggaggattatttgg 105
||||||||||||||||
Sbjct: 11 ccggaggattatttgg 26
>PTA.sd.6872.C1 nseq=10
Length = 2573
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 26 ttctgttctggagact 41
||||||||||||||||
Sbjct: 1969 ttctgttctggagact 1984
>PTA.sd.5151.C1 nseq=11
Length = 1712
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 58 cggttcttgaggagtt 73
||||||||||||||||
Sbjct: 1256 cggttcttgaggagtt 1271
>PTA.sd.16555.C1 nseq=9
Length = 929
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 83 tccgcatccggaggattatt 102
|||| |||||||||||||||
Sbjct: 573 tccgtatccggaggattatt 592
>PTA.sd.10807.C1 nseq=16
Length = 2723
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 15 tttgatggtgattctgttct 34
||||||| ||||||||||||
Sbjct: 2193 tttgatgctgattctgttct 2174
>PTA.sd.10036.C1 nseq=4
Length = 1751
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 59 ggttcttgaggagtta 74
||||||||||||||||
Sbjct: 584 ggttcttgaggagtta 599
>At1g21990.F
Length = 1398
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 60 gttcttgaggagttaa 75
||||||||||||||||
Sbjct: 553 gttcttgaggagttaa 568
>At1g21620.F
Length = 927
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 60 gttcttgaggagttaa 75
||||||||||||||||
Sbjct: 175 gttcttgaggagttaa 160
>At5g26800.F PTA.sd.15711.singlet
Length = 387
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 147 cttgagtctaagcgt 161
|||||||||||||||
Sbjct: 195 cttgagtctaagcgt 181
>At1g76570.F PTA.sd.4373.singlet
Length = 984
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 137 gagctttagacttga 151
|||||||||||||||
Sbjct: 292 gagctttagacttga 278
>PTA.sd.7784.C1 nseq=4
Length = 2043
Score = 30.2 bits (15), Expect = 8.2
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 229 agaaacctgaaagccttaaaata 251
|||||||||||| ||| ||||||
Sbjct: 106 agaaacctgaaaacctaaaaata 84
>PTA.sd.6574.C1 nseq=17
Length = 1161
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 tagtccggttcttga 67
|||||||||||||||
Sbjct: 693 tagtccggttcttga 707
>PTA.sd.4802.C1 nseq=15
Length = 2500
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 atatgtgttcgttct 125
|||||||||||||||
Sbjct: 572 atatgtgttcgttct 586
>PTA.sd.3969.C1 nseq=7
Length = 2084
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 agtttgatggtgatt 27
|||||||||||||||
Sbjct: 922 agtttgatggtgatt 936
>PTA.sd.3051.C1 nseq=2
Length = 1996
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 190 tcgattctccaagcc 204
|||||||||||||||
Sbjct: 1843 tcgattctccaagcc 1857
>PTA.sd.17760.C1 nseq=7
Length = 2609
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 256 gaattggtccttttg 270
|||||||||||||||
Sbjct: 525 gaattggtccttttg 539
>PTA.sd.1769.C1 nseq=2
Length = 3793
Score = 30.2 bits (15), Expect = 8.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 88 atccggaggattatttgga 106
||||||||||| |||||||
Sbjct: 2976 atccggaggatgatttgga 2994
>PTA.sd.16595.C1 nseq=5
Length = 2582
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 129 tcactggagagcttt 143
|||||||||||||||
Sbjct: 983 tcactggagagcttt 997
>PTA.sd.15424.C1 nseq=10
Length = 1583
Score = 30.2 bits (15), Expect = 8.2
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 57 ccggttcttgaggagttaaccgt 79
||||||||||| || ||||||||
Sbjct: 661 ccggttcttgaagatttaaccgt 683
>PTA.sd.14605.C1 nseq=9
Length = 1397
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 180 aaagttgaaatcgat 194
|||||||||||||||
Sbjct: 787 aaagttgaaatcgat 801
>PTA.sd.12929.C1 nseq=7
Length = 2392
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 122 ttctcaatcactgga 136
|||||||||||||||
Sbjct: 682 ttctcaatcactgga 696
>PTA.sd.11828.C1 nseq=12
Length = 806
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 270 gcggaggtaaccgtt 284
|||||||||||||||
Sbjct: 106 gcggaggtaaccgtt 92
>PTA.sd.10342.C1 nseq=12
Length = 961
Score = 30.2 bits (15), Expect = 8.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 111 atatgtgttcgttctcaat 129
||||||| |||||||||||
Sbjct: 239 atatgtgctcgttctcaat 257
>PTA.sd.10213.C1 nseq=4
Length = 1551
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 aaatcgattctccaa 201
|||||||||||||||
Sbjct: 669 aaatcgattctccaa 655
>PTA.sd.10148.C1 nseq=2
Length = 1257
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 tatctgtgataagaa 232
|||||||||||||||
Sbjct: 985 tatctgtgataagaa 971
>At1g78640.F
Length = 1464
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 72 ttaaccgtgattccg 86
|||||||||||||||
Sbjct: 1238 ttaaccgtgattccg 1224
>At1g70970.F
Length = 1209
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 gagtttatgagtatc 221
|||||||||||||||
Sbjct: 590 gagtttatgagtatc 604
>At1g50150.F
Length = 1077
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 99 tatttggaagtcata 113
|||||||||||||||
Sbjct: 557 tatttggaagtcata 543
>At1g49870.F
Length = 2487
Score = 30.2 bits (15), Expect = 8.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 228 aagaaacctgaaagc 242
|||||||||||||||
Sbjct: 2131 aagaaacctgaaagc 2145
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 284
length of database: 39,126,732
effective HSP length: 16
effective length of query: 268
effective length of database: 38,700,540
effective search space: 10371744720
effective search space used: 10371744720
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)