BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_24004
(286 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g65770.F 567 e-161
At1g65740.F 50 9e-06
At1g65760.F 44 6e-04
PTA.sd.8981.C1 nseq=9 34 0.53
PTA.sd.12932.C1 nseq=12 34 0.53
At1g57906.F 34 0.53
PTA.sd.8027.C1 nseq=4 32 2.1
PTA.sd.7733.C1 nseq=12 32 2.1
PTA.sd.3535.C1 nseq=8 32 2.1
PTA.sd.16301.C1 nseq=6 32 2.1
PTA.sd.15501.C1 nseq=8 32 2.1
PTA.sd.13938.C1 nseq=7 32 2.1
PTA.sd.13937.C1 nseq=14 32 2.1
PTA.sd.10812.C1 nseq=8 32 2.1
nad4L.F 32 2.1
>At1g65770.F
Length = 1083
Score = 567 bits (286), Expect = e-161
Identities = 286/286 (100%)
Strand = Plus / Plus
Query: 1 tcatgactggcgtacgagaaaagaaacaaggcctatattcaaaagagtggctcttgttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tcatgactggcgtacgagaaaagaaacaaggcctatattcaaaagagtggctcttgttaa 476
Query: 61 agacaaggaaggagataatcaggttcttggaattcgcagtaccgggaagatgatgtactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agacaaggaaggagataatcaggttcttggaattcgcagtaccgggaagatgatgtactg 536
Query: 121 ggacataaaaacatggaaagccaaagaagagggttatgaattctctgacattatagttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ggacataaaaacatggaaagccaaagaagagggttatgaattctctgacattatagttca 596
Query: 181 caaagggcaaacatacgccttggattcaattggcattgtttactggattcgttctgatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 caaagggcaaacatacgccttggattcaattggcattgtttactggattcgttctgatct 656
Query: 241 taaattcattaggtttggacctctagttggtgactggaccggagat 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 taaattcattaggtttggacctctagttggtgactggaccggagat 702
>At1g65740.F
Length = 1116
Score = 50.1 bits (25), Expect = 9e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 161 ttctctgacattatagttcacaaagggcaaacatacgccttggattcaa 209
||||| |||||||||||||||||||| ||| |||| |||||||||||
Sbjct: 601 ttctccgacattatagttcacaaaggagtaacttacgtcttggattcaa 649
Score = 32.2 bits (16), Expect = 2.1
Identities = 28/32 (87%)
Strand = Plus / Plus
Query: 50 gctcttgttaaagacaaggaaggagataatca 81
|||||||| |||| |||||||||||| ||||
Sbjct: 478 gctcttgtcaaagtgaaggaaggagatgatca 509
>At1g65760.F
Length = 1089
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 161 ttctctgacattatagttcacaaagg 186
||||| ||||||||||||||||||||
Sbjct: 610 ttctccgacattatagttcacaaagg 635
>PTA.sd.8981.C1 nseq=9
Length = 1376
Score = 34.2 bits (17), Expect = 0.53
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 217 tgtttactggattcgtt 233
|||||||||||||||||
Sbjct: 776 tgtttactggattcgtt 792
>PTA.sd.12932.C1 nseq=12
Length = 1095
Score = 34.2 bits (17), Expect = 0.53
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 60 aagacaaggaaggagat 76
|||||||||||||||||
Sbjct: 757 aagacaaggaaggagat 773
>At1g57906.F
Length = 687
Score = 34.2 bits (17), Expect = 0.53
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 157 tgaattctctgacattatagttcacaaag 185
|||||||||||| ||||| |||| |||||
Sbjct: 231 tgaattctctgatattattgttctcaaag 259
>PTA.sd.8027.C1 nseq=4
Length = 4514
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 197 gccttggattcaattg 212
||||||||||||||||
Sbjct: 3785 gccttggattcaattg 3800
>PTA.sd.7733.C1 nseq=12
Length = 2531
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 20 aaagaaacaaggccta 35
||||||||||||||||
Sbjct: 487 aaagaaacaaggccta 472
>PTA.sd.3535.C1 nseq=8
Length = 1185
Score = 32.2 bits (16), Expect = 2.1
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 52 tcttgttaaagacaaggaaggaga 75
||||||||||||||| ||| ||||
Sbjct: 346 tcttgttaaagacaaagaaagaga 323
>PTA.sd.16301.C1 nseq=6
Length = 871
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 137 aaagccaaagaagagg 152
||||||||||||||||
Sbjct: 108 aaagccaaagaagagg 123
>PTA.sd.15501.C1 nseq=8
Length = 1496
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 131 acatggaaagccaaag 146
||||||||||||||||
Sbjct: 1300 acatggaaagccaaag 1315
>PTA.sd.13938.C1 nseq=7
Length = 1653
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 75 ataatcaggttcttgg 90
||||||||||||||||
Sbjct: 885 ataatcaggttcttgg 900
>PTA.sd.13937.C1 nseq=14
Length = 3490
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 75 ataatcaggttcttgg 90
||||||||||||||||
Sbjct: 2366 ataatcaggttcttgg 2351
>PTA.sd.10812.C1 nseq=8
Length = 2488
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 86 cttggaattcgcagta 101
||||||||||||||||
Sbjct: 633 cttggaattcgcagta 648
>nad4L.F
Length = 303
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 203 gattcaattggcattg 218
||||||||||||||||
Sbjct: 110 gattcaattggcattg 95
>At4g01270.F
Length = 1521
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 105 ggaagatgatgtactg 120
||||||||||||||||
Sbjct: 594 ggaagatgatgtactg 609
>At1g37080.F
Length = 675
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 55 tgttaaagacaaggaa 70
||||||||||||||||
Sbjct: 139 tgttaaagacaaggaa 124
>At1g10040.F PTA.sd.708.singlet
Length = 1140
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 236 gatcttaaattcatt 250
|||||||||||||||
Sbjct: 748 gatcttaaattcatt 762
>At1g08350.F PTA.sd.567.singlet
Length = 1770
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 35 atattcaaaagagtg 49
|||||||||||||||
Sbjct: 1220 atattcaaaagagtg 1206
>PTA.sd.6894.C1 nseq=5
Length = 912
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 14 acgagaaaagaaaca 28
|||||||||||||||
Sbjct: 877 acgagaaaagaaaca 863
>PTA.sd.6712.C1 nseq=10
Length = 995
Score = 30.2 bits (15), Expect = 8.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 223 ctggattcgttctgatctt 241
|||||||||||||| ||||
Sbjct: 423 ctggattcgttctgttctt 441
>PTA.sd.6308.C1 nseq=14
Length = 1288
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 147 aagagggttatgaat 161
|||||||||||||||
Sbjct: 749 aagagggttatgaat 763
>PTA.sd.6209.C1 nseq=6
Length = 2478
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 136 gaaagccaaagaaga 150
|||||||||||||||
Sbjct: 1767 gaaagccaaagaaga 1753
>PTA.sd.5025.C1 nseq=15
Length = 2779
Score = 30.2 bits (15), Expect = 8.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 133 atggaaagccaaagaagag 151
||||||| |||||||||||
Sbjct: 2427 atggaaacccaaagaagag 2445
>PTA.sd.478.C1 nseq=10
Length = 674
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 272 gactggaccggagat 286
|||||||||||||||
Sbjct: 370 gactggaccggagat 384
>PTA.sd.4561.C1 nseq=6
Length = 6432
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 138 aagccaaagaagagg 152
|||||||||||||||
Sbjct: 4472 aagccaaagaagagg 4486
>PTA.sd.4296.C1 nseq=24
Length = 3633
Score = 30.2 bits (15), Expect = 8.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 135 ggaaagccaaagaagaggg 153
||||| |||||||||||||
Sbjct: 977 ggaaaaccaaagaagaggg 995
>PTA.sd.4276.C1 nseq=16
Length = 1856
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 65 aaggaaggagataat 79
|||||||||||||||
Sbjct: 130 aaggaaggagataat 116
>PTA.sd.3452.C1 nseq=10
Length = 2298
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 123 acataaaaacatgga 137
|||||||||||||||
Sbjct: 1142 acataaaaacatgga 1156
>PTA.sd.3150.C1 nseq=3
Length = 2732
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 aaagccaaagaagag 151
|||||||||||||||
Sbjct: 1510 aaagccaaagaagag 1524
>PTA.sd.2875.C1 nseq=2
Length = 2721
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 aaagccaaagaagag 151
|||||||||||||||
Sbjct: 1504 aaagccaaagaagag 1518
>PTA.sd.2554.C1 nseq=7
Length = 12300
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 cgttctgatcttaaa 244
|||||||||||||||
Sbjct: 7249 cgttctgatcttaaa 7263
>PTA.sd.16668.C1 nseq=9
Length = 3336
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 aaagccaaagaagag 151
|||||||||||||||
Sbjct: 1642 aaagccaaagaagag 1656
>PTA.sd.16299.C2 nseq=2
Length = 3179
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 aaagccaaagaagag 151
|||||||||||||||
Sbjct: 1575 aaagccaaagaagag 1589
>PTA.sd.15728.C1 nseq=4
Length = 2810
Score = 30.2 bits (15), Expect = 8.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 208 aattggcattgtttactgg 226
||||| |||||||||||||
Sbjct: 2753 aattgccattgtttactgg 2735
>PTA.sd.15720.C1 nseq=2
Length = 626
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 35 atattcaaaagagtg 49
|||||||||||||||
Sbjct: 591 atattcaaaagagtg 577
>PTA.sd.15693.C1 nseq=36
Length = 2861
Score = 30.2 bits (15), Expect = 8.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 60 aagacaaggaaggagataa 78
|||| ||||||||||||||
Sbjct: 77 aagagaaggaaggagataa 59
>PTA.sd.15589.C1 nseq=9
Length = 1525
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 79 tcaggttcttggaat 93
|||||||||||||||
Sbjct: 483 tcaggttcttggaat 497
>PTA.sd.14408.C1 nseq=9
Length = 1652
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 agacaaggaaggaga 75
|||||||||||||||
Sbjct: 125 agacaaggaaggaga 139
>PTA.sd.13247.C1 nseq=16
Length = 1994
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 cgagaaaagaaacaa 29
|||||||||||||||
Sbjct: 185 cgagaaaagaaacaa 199
>PTA.sd.11271.C1 nseq=2
Length = 10469
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 149 gagggttatgaattc 163
|||||||||||||||
Sbjct: 3030 gagggttatgaattc 3044
>PTA.sd.10977.C1 nseq=4
Length = 1727
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 caaaagagtggctct 54
|||||||||||||||
Sbjct: 1018 caaaagagtggctct 1004
>PTA.sd.10449.C1 nseq=38
Length = 1319
Score = 30.2 bits (15), Expect = 8.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 128 aaaacatggaaagccaaag 146
|||| ||||||||||||||
Sbjct: 1006 aaaagatggaaagccaaag 1024
>At5g55020.F
Length = 1572
Score = 30.2 bits (15), Expect = 8.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 57 ttaaagacaaggaaggaga 75
||||||| |||||||||||
Sbjct: 1054 ttaaagagaaggaaggaga 1036
>At5g47160.F
Length = 1248
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 gaaagccaaagaaga 150
|||||||||||||||
Sbjct: 358 gaaagccaaagaaga 372
>At5g37640.F
Length = 969
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 aagacaaggaaggag 74
|||||||||||||||
Sbjct: 326 aagacaaggaaggag 340
>At5g22420.F
Length = 1230
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 ataaaaacatggaaa 139
|||||||||||||||
Sbjct: 1106 ataaaaacatggaaa 1120
>At5g17180.F
Length = 372
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 catgactggcgtacg 16
|||||||||||||||
Sbjct: 93 catgactggcgtacg 107
>At4g26280.F
Length = 945
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 tagttggtgactgga 278
|||||||||||||||
Sbjct: 833 tagttggtgactgga 847
>At4g04140.F
Length = 2841
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 134 tggaaagccaaagaa 148
|||||||||||||||
Sbjct: 1345 tggaaagccaaagaa 1359
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 286
length of database: 39,126,732
effective HSP length: 16
effective length of query: 270
effective length of database: 38,700,540
effective search space: 10449145800
effective search space used: 10449145800
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)