BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_23980
(287 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.10045.C1 nseq=2 537 e-152
At5g67080.F 172 9e-43
PTA.sd.13605.C1 nseq=6 46 1e-04
PTA.sd.10963.C1 nseq=6 36 0.14
At1g65200.F 34 0.53
At4g32300.F PTA.sd.13225.singlet 32 2.1
PTA.sd.955.C1 nseq=13 32 2.1
PTA.sd.9335.C1 nseq=10 32 2.1
PTA.sd.5299.C1 nseq=3 32 2.1
PTA.sd.17382.C1 nseq=4 32 2.1
PTA.sd.15331.C1 nseq=4 32 2.1
PTA.sd.14463.C1 nseq=58 32 2.1
PTA.sd.14461.C2 nseq=100 32 2.1
PTA.sd.10086.C1 nseq=3 32 2.1
At5g12430.F PTA.sd.14711.singlet 30 8.3
>PTA.sd.10045.C1 nseq=2
Length = 1371
Score = 537 bits (271), Expect = e-152
Identities = 283/287 (98%)
Strand = Plus / Plus
Query: 1 cgaggattcaacggtggagaacggagaagagatgcataacttgttattagagtacgcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cgaggattcaacggtggagaacggagaagagatgcataacttgttattagagtacgcttc 457
Query: 61 gagaggaagcttagcgagttacatgaagaaacttggcggtgagggtttaccggagtccac 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gagaggaagcttagcgaggtacatgaagaaacttggcggtgagggtttaccggagtccac 517
Query: 121 cgtgcgtcgccacacaggatcagtgcttcgagggttacgtcacatccacgctaaagggtt 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cgtacgtcgccacacaggatcagtgcttcgagggttacgtcacatccacgctaaagggtt 577
Query: 181 tgcacactgcgatataaaactcgcgaatattctgttatttaacgacggctctgttaaaat 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 578 tgcacactgcgatataaaactcgcgaatattctgttattcaacgacggctctgttaaaat 637
Query: 241 tgccgatttcggtttggcgatgagagttgacggagatttaacggcgt 287
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 638 tgccgatttcggtttggcgatgagagttcacggagatttaacggcgt 684
>At5g67080.F
Length = 1035
Score = 172 bits (87), Expect = 9e-43
Identities = 230/277 (83%), Gaps = 3/277 (1%)
Strand = Plus / Plus
Query: 11 acggtggagaacggagaagagatgcataacttgttattagagtacgcttcgagaggaagc 70
||||| || ||||| |||||||||||||| ||||| || || |||||||| |||||||||
Sbjct: 217 acggtcgaaaacggtgaagagatgcataatttgttcttggaatacgcttctagaggaagc 276
Query: 71 ttagcgagttacatgaagaaacttggcggtgagggtttaccggagtccaccgtgcgtcgc 130
|||| |||||| | |||||| | | |||||| ||| ||||||| |||||||||||||||
Sbjct: 277 ttagagagttatcttaagaaattagccggtgaaggtgtaccggaatccaccgtgcgtcgc 336
Query: 131 cacacaggatcagtgcttcgagggttacgtcacatccacgctaaagggtttgcacactgc 190
||||||||||| |||||| |||| |||| |||||||||||||| || || || |||||
Sbjct: 337 cacacaggatcggtgcttagaggtctacgacacatccacgctaacggattcgctcactgt 396
Query: 191 gatataaaactcgcgaatattctgttatttaacgacggctctgttaaaattgccgatttc 250
||| ||||||||| |||||||||||| || |||||| | ||||| ||||| |||||
Sbjct: 397 gatttaaaactcgggaatattctgttgttcggtgacggcgccgttaagattgcggatttt 456
Query: 251 ggtttggcgatgagagttgacggagatttaacggcgt 287
|| ||||||| |||| ||| | |||||||||||||
Sbjct: 457 ggattggcgaagagaattg---gggatttaacggcgt 490
>PTA.sd.13605.C1 nseq=6
Length = 1345
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 acggtggagaacggagaagagat 33
|||||||||||||||||||||||
Sbjct: 270 acggtggagaacggagaagagat 292
>PTA.sd.10963.C1 nseq=6
Length = 1739
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 76 gagttacatgaagaaact 93
||||||||||||||||||
Sbjct: 1104 gagttacatgaagaaact 1121
>At1g65200.F
Length = 3306
Score = 34.2 bits (17), Expect = 0.53
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 25 agaagagatgcataact 41
|||||||||||||||||
Sbjct: 1700 agaagagatgcataact 1684
>At4g32300.F PTA.sd.13225.singlet
Length = 2337
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 185 cactgcgatataaaac 200
||||||||||||||||
Sbjct: 1717 cactgcgatataaaac 1732
>PTA.sd.955.C1 nseq=13
Length = 1441
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 15 tggagaacggagaaga 30
||||||||||||||||
Sbjct: 309 tggagaacggagaaga 294
>PTA.sd.9335.C1 nseq=10
Length = 3428
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 185 cactgcgatataaaac 200
||||||||||||||||
Sbjct: 2345 cactgcgatataaaac 2360
>PTA.sd.5299.C1 nseq=3
Length = 2543
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 185 cactgcgatataaaac 200
||||||||||||||||
Sbjct: 1905 cactgcgatataaaac 1920
Score = 30.2 bits (15), Expect = 8.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 240 ttgccgatttcggtttggc 258
|||| ||||||||||||||
Sbjct: 1960 ttgctgatttcggtttggc 1978
>PTA.sd.17382.C1 nseq=4
Length = 1287
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 270 acggagatttaacggc 285
||||||||||||||||
Sbjct: 334 acggagatttaacggc 319
>PTA.sd.15331.C1 nseq=4
Length = 747
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 270 acggagatttaacggc 285
||||||||||||||||
Sbjct: 410 acggagatttaacggc 425
>PTA.sd.14463.C1 nseq=58
Length = 2024
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 19 gaacggagaagagatg 34
||||||||||||||||
Sbjct: 65 gaacggagaagagatg 50
>PTA.sd.14461.C2 nseq=100
Length = 1979
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 19 gaacggagaagagatg 34
||||||||||||||||
Sbjct: 65 gaacggagaagagatg 50
>PTA.sd.10086.C1 nseq=3
Length = 1082
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 attcaacggtggagaa 21
||||||||||||||||
Sbjct: 416 attcaacggtggagaa 431
>At5g12430.F PTA.sd.14711.singlet
Length = 3564
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 agaagagatgcataa 39
|||||||||||||||
Sbjct: 3390 agaagagatgcataa 3404
>At1g17340.F PTA.sd.1274.singlet
Length = 2409
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 60 cgagaggaagcttag 74
|||||||||||||||
Sbjct: 2031 cgagaggaagcttag 2017
>PTA.sd.9922.C1 nseq=13
Length = 1694
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 cgagaggaagcttag 74
|||||||||||||||
Sbjct: 770 cgagaggaagcttag 784
>PTA.sd.911.C1 nseq=7
Length = 1263
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 36 ataacttgttattag 50
|||||||||||||||
Sbjct: 1216 ataacttgttattag 1230
>PTA.sd.8272.C1 nseq=7
Length = 830
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 gagttacatgaagaa 90
|||||||||||||||
Sbjct: 700 gagttacatgaagaa 686
>PTA.sd.7489.C1 nseq=2
Length = 2151
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 78 gttacatgaagaaac 92
|||||||||||||||
Sbjct: 186 gttacatgaagaaac 200
>PTA.sd.5169.C1 nseq=16
Length = 2009
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 5 gattcaacggtggag 19
|||||||||||||||
Sbjct: 252 gattcaacggtggag 266
>PTA.sd.4393.C1 nseq=25
Length = 3557
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 129 gccacacaggatcag 143
|||||||||||||||
Sbjct: 1379 gccacacaggatcag 1365
>PTA.sd.2670.C1 nseq=4
Length = 7406
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 gagttgacggagatt 278
|||||||||||||||
Sbjct: 325 gagttgacggagatt 339
>PTA.sd.2492.C1 nseq=6
Length = 1067
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 gagaggaagcttagc 75
|||||||||||||||
Sbjct: 930 gagaggaagcttagc 944
>PTA.sd.1916.C1 nseq=22
Length = 994
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 16 ggagaacggagaaga 30
|||||||||||||||
Sbjct: 312 ggagaacggagaaga 298
>PTA.sd.17673.C1 nseq=61
Length = 1742
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 19 gaacggagaagagat 33
|||||||||||||||
Sbjct: 87 gaacggagaagagat 73
>PTA.sd.17672.C1 nseq=85
Length = 1722
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 19 gaacggagaagagat 33
|||||||||||||||
Sbjct: 126 gaacggagaagagat 112
>PTA.sd.17590.C1 nseq=2
Length = 1087
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 7 ttcaacggtggagaa 21
|||||||||||||||
Sbjct: 205 ttcaacggtggagaa 219
>PTA.sd.17429.C1 nseq=5
Length = 852
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 80 tacatgaagaaactt 94
|||||||||||||||
Sbjct: 647 tacatgaagaaactt 661
>PTA.sd.14147.C1 nseq=2
Length = 2462
Score = 30.2 bits (15), Expect = 8.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 247 tttcggtttggcgatgaga 265
|||||||||||| ||||||
Sbjct: 525 tttcggtttggcaatgaga 543
>PTA.sd.13642.C1 nseq=42
Length = 1671
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 7 ttcaacggtggagaa 21
|||||||||||||||
Sbjct: 1259 ttcaacggtggagaa 1273
>PTA.sd.12898.C1 nseq=11
Length = 2322
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 16 ggagaacggagaaga 30
|||||||||||||||
Sbjct: 105 ggagaacggagaaga 91
>PTA.sd.10957.C2 nseq=10
Length = 1557
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 272 ggagatttaacggcg 286
|||||||||||||||
Sbjct: 274 ggagatttaacggcg 260
>At5g38450.F
Length = 1557
Score = 30.2 bits (15), Expect = 8.3
Identities = 24/27 (88%)
Strand = Plus / Plus
Query: 13 ggtggagaacggagaagagatgcataa 39
|||||||| ||||| |||||||||||
Sbjct: 588 ggtggagataggagaggagatgcataa 614
>At5g28970.F
Length = 3519
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 gttaaaattgccgat 247
|||||||||||||||
Sbjct: 1660 gttaaaattgccgat 1674
>At3g19060.F
Length = 4944
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 179 tttgcacactgcgat 193
|||||||||||||||
Sbjct: 3187 tttgcacactgcgat 3173
>At3g13090.F
Length = 4401
Score = 30.2 bits (15), Expect = 8.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 134 acaggatcagtgctt 148
|||||||||||||||
Sbjct: 1178 acaggatcagtgctt 1192
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 287
length of database: 39,126,732
effective HSP length: 16
effective length of query: 271
effective length of database: 38,700,540
effective search space: 10487846340
effective search space used: 10487846340
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)