BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_23910
(288 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49550.F 571 e-162
PTA.sd.4888.C1 nseq=8 34 0.54
PTA.sd.12576.C1 nseq=3 34 0.54
At1g42110.F 34 0.54
PTA.sd.6374.C1 nseq=14 32 2.1
PTA.sd.2762.C1 nseq=3 32 2.1
PTA.sd.2744.C1 nseq=13 32 2.1
PTA.sd.16519.C1 nseq=12 32 2.1
PTA.sd.13825.C1 nseq=22 32 2.1
PTA.sd.12398.C1 nseq=13 32 2.1
At5g61280.F 32 2.1
At5g24200.F 32 2.1
At5g58000.F PTA.sd.17324.singlet 30 8.4
At4g16650.F PTA.sd.12012.singlet 30 8.4
At4g04880.F PTA.sd.11369.singlet 30 8.4
>At1g49550.F
Length = 777
Score = 571 bits (288), Expect = e-162
Identities = 288/288 (100%)
Strand = Plus / Plus
Query: 1 tcaaaaagttggtagtagtggaaaatcagaattggacatatatttaggtgaaccaacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tcaaaaagttggtagtagtggaaaatcagaattggacatatatttaggtgaaccaacatt 470
Query: 61 agatatggctgcttttagacattttaatgtcctagcatattggaaagataactcttgtcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 agatatggctgcttttagacattttaatgtcctagcatattggaaagataactcttgtcg 530
Query: 121 ctttaaggagttatcaagcatggcttgtgatgttctctccattccgataacaacggttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctttaaggagttatcaagcatggcttgtgatgttctctccattccgataacaacggttgc 590
Query: 181 ttctgagtcgtcatttagcataggcagcggagtccttagtaaatataggagtagtcttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttctgagtcgtcatttagcataggcagcggagtccttagtaaatataggagtagtcttct 650
Query: 241 tcctgaaaatatccaagcattaatctgcacaaggaattggctgcgagg 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tcctgaaaatatccaagcattaatctgcacaaggaattggctgcgagg 698
>PTA.sd.4888.C1 nseq=8
Length = 1817
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 68 gctgcttttagacattt 84
|||||||||||||||||
Sbjct: 1261 gctgcttttagacattt 1245
>PTA.sd.12576.C1 nseq=3
Length = 2041
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 222 aatataggagtagtctt 238
|||||||||||||||||
Sbjct: 1724 aatataggagtagtctt 1708
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 12 gtagtagtggaaaat 26
|||||||||||||||
Sbjct: 250 gtagtagtggaaaat 264
>At1g42110.F
Length = 1980
Score = 34.2 bits (17), Expect = 0.54
Identities = 32/37 (86%)
Strand = Plus / Plus
Query: 234 gtcttcttcctgaaaatatccaagcattaatctgcac 270
|||||||||| ||||| | ||||||||||| |||||
Sbjct: 1823 gtcttcttccccaaaatgtgcaagcattaatttgcac 1859
>PTA.sd.6374.C1 nseq=14
Length = 5164
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 94 agcatattggaaagat 109
||||||||||||||||
Sbjct: 5108 agcatattggaaagat 5093
>PTA.sd.2762.C1 nseq=3
Length = 2956
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 228 ggagtagtcttcttcc 243
||||||||||||||||
Sbjct: 2373 ggagtagtcttcttcc 2358
>PTA.sd.2744.C1 nseq=13
Length = 2525
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 163 tccgataacaacggtt 178
||||||||||||||||
Sbjct: 1797 tccgataacaacggtt 1812
>PTA.sd.16519.C1 nseq=12
Length = 1132
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 239 cttcctgaaaatatcc 254
||||||||||||||||
Sbjct: 863 cttcctgaaaatatcc 848
>PTA.sd.13825.C1 nseq=22
Length = 1677
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 10 tggtagtagtggaaaa 25
||||||||||||||||
Sbjct: 252 tggtagtagtggaaaa 237
>PTA.sd.12398.C1 nseq=13
Length = 1465
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 238 tcttcctgaaaatatc 253
||||||||||||||||
Sbjct: 582 tcttcctgaaaatatc 567
>At5g61280.F
Length = 792
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 25 atcagaattggacata 40
||||||||||||||||
Sbjct: 75 atcagaattggacata 90
>At5g24200.F
Length = 1029
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 140 atggcttgtgatgttc 155
||||||||||||||||
Sbjct: 346 atggcttgtgatgttc 361
>At5g58000.F PTA.sd.17324.singlet
Length = 3198
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 228 ggagtagtcttcttc 242
|||||||||||||||
Sbjct: 437 ggagtagtcttcttc 423
>At4g16650.F PTA.sd.12012.singlet
Length = 2739
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 tggacatatatttag 47
|||||||||||||||
Sbjct: 1287 tggacatatatttag 1301
>At4g04880.F PTA.sd.11369.singlet
Length = 1248
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 133 atcaagcatggcttg 147
|||||||||||||||
Sbjct: 783 atcaagcatggcttg 769
>At2g16860.F PTA.sd.5148.singlet
Length = 987
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 110 aactcttgtcgcttt 124
|||||||||||||||
Sbjct: 836 aactcttgtcgcttt 822
>At1g12030.F PTA.sd.851.singlet
Length = 888
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 235 tcttcttcctgaaaa 249
|||||||||||||||
Sbjct: 197 tcttcttcctgaaaa 183
>PTA.sd.9988.C1 nseq=2
Length = 1784
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 132 tatcaagcatggctt 146
|||||||||||||||
Sbjct: 1224 tatcaagcatggctt 1210
>PTA.sd.9887.C1 nseq=5
Length = 2108
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 17 agtggaaaatcagaa 31
|||||||||||||||
Sbjct: 1171 agtggaaaatcagaa 1185
>PTA.sd.8313.C1 nseq=18
Length = 775
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 233 agtcttcttcctgaaaata 251
||||||||||||| |||||
Sbjct: 577 agtcttcttcctggaaata 595
>PTA.sd.7806.C1 nseq=4
Length = 2708
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 30 aattggacatatatt 44
|||||||||||||||
Sbjct: 2479 aattggacatatatt 2493
>PTA.sd.7443.C1 nseq=10
Length = 858
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 ttttagacattttaa 87
|||||||||||||||
Sbjct: 845 ttttagacattttaa 831
>PTA.sd.7224.C1 nseq=11
Length = 2329
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 216 ttagtaaatatagga 230
|||||||||||||||
Sbjct: 66 ttagtaaatatagga 52
>PTA.sd.6934.C1 nseq=5
Length = 3075
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 atatttaggtgaacc 54
|||||||||||||||
Sbjct: 2995 atatttaggtgaacc 3009
>PTA.sd.3985.C1 nseq=2
Length = 1545
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 263 atctgcacaaggaat 277
|||||||||||||||
Sbjct: 968 atctgcacaaggaat 954
>PTA.sd.2885.C1 nseq=3
Length = 3250
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 245 gaaaatatccaagca 259
|||||||||||||||
Sbjct: 66 gaaaatatccaagca 52
>PTA.sd.2770.C1 nseq=13
Length = 1505
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 224 tataggagtagtcttcttc 242
||||| |||||||||||||
Sbjct: 45 tatagtagtagtcttcttc 27
>PTA.sd.1769.C1 nseq=2
Length = 3793
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 73 ttttagacattttaa 87
|||||||||||||||
Sbjct: 365 ttttagacattttaa 379
>PTA.sd.15611.C1 nseq=10
Length = 3236
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 atattggaaagataa 111
|||||||||||||||
Sbjct: 2063 atattggaaagataa 2077
>PTA.sd.15129.C1 nseq=9
Length = 2324
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 21 gaaaatcagaattgg 35
|||||||||||||||
Sbjct: 1332 gaaaatcagaattgg 1346
>PTA.sd.14947.C1 nseq=13
Length = 1815
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 230 agtagtcttcttcct 244
|||||||||||||||
Sbjct: 1459 agtagtcttcttcct 1445
>PTA.sd.13498.C1 nseq=2
Length = 3693
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 3 aaaaagttggtagta 17
|||||||||||||||
Sbjct: 1835 aaaaagttggtagta 1849
>PTA.sd.12754.C1 nseq=7
Length = 2646
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 232 tagtcttcttcctga 246
|||||||||||||||
Sbjct: 886 tagtcttcttcctga 900
>PTA.sd.10523.C1 nseq=2
Length = 1471
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 ttagatatggctgct 73
|||||||||||||||
Sbjct: 307 ttagatatggctgct 321
>psbA.F
Length = 1062
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 92 ctagcatattggaaa 106
|||||||||||||||
Sbjct: 791 ctagcatattggaaa 777
>At5g61070.F
Length = 2145
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 gtgaaccaacattag 62
|||||||||||||||
Sbjct: 1806 gtgaaccaacattag 1792
>At5g21030.F
Length = 2553
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 229 gagtagtcttcttcc 243
|||||||||||||||
Sbjct: 57 gagtagtcttcttcc 71
>At1g51190.F
Length = 1698
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 aaagttggtagtagt 19
|||||||||||||||
Sbjct: 756 aaagttggtagtagt 742
>At1g24200.F
Length = 591
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 73 ttttagacattttaa 87
|||||||||||||||
Sbjct: 356 ttttagacattttaa 370
>At1g02580.F
Length = 2070
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 96 catattggaaagata 110
|||||||||||||||
Sbjct: 687 catattggaaagata 701
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 288
length of database: 39,126,732
effective HSP length: 16
effective length of query: 272
effective length of database: 38,700,540
effective search space: 10526546880
effective search space used: 10526546880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)