BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_23886
(289 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g32640.F 573 e-163
At5g35290.F 72 2e-12
At5g35300.F 64 6e-10
PTA.sd.7111.C1 nseq=10 36 0.14
PTA.sd.2665.C1 nseq=4 34 0.54
PTA.sd.17836.C1 nseq=5 34 0.54
PTA.sd.16540.C1 nseq=7 34 0.54
At4g11490.F 34 0.54
At1g63210.F 34 0.54
PTA.sd.252.C1 nseq=3 32 2.1
PTA.sd.16729.C1 nseq=19 32 2.1
PTA.sd.15281.C1 nseq=6 32 2.1
PTA.sd.13033.C1 nseq=8 32 2.1
PTA.sd.10562.C1 nseq=39 32 2.1
At3g46240.F 32 2.1
>At5g32640.F
Length = 1209
Score = 573 bits (289), Expect = e-163
Identities = 289/289 (100%)
Strand = Plus / Plus
Query: 1 ttcgttgttgccaccggagtctccgccagaaccgctagacccactgaacccaccagatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttcgttgttgccaccggagtctccgccagaaccgctagacccactgaacccaccagatcc 356
Query: 61 tcctcctcatatctacattttcttcgacgtatctcattctcagccgcatctttccacttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcctcctcatatctacattttcttcgacgtatctcattctcagccgcatctttccacttt 416
Query: 121 tttgatctcattctcctctgacaaagctttttctccttcccagcctccactccccaaccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tttgatctcattctcctctgacaaagctttttctccttcccagcctccactccccaaccg 476
Query: 181 gctaagagaaccagacgctattctcaagctgttcttcaccatggttgctcccactattgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gctaagagaaccagacgctattctcaagctgttcttcaccatggttgctcccactattgc 536
Query: 241 tacccaggcagtagagtgtaacgggacttgtttggttgtattcacctca 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tacccaggcagtagagtgtaacgggacttgtttggttgtattcacctca 585
>At5g35290.F
Length = 237
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 1 ttcgttgttgccaccggagtctccgccagaaccgctagacccac 44
||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 105 ttcgttgttgccaccagagtctccgccagaaccgccagacccac 62
Score = 38.2 bits (19), Expect = 0.034
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 144 aagctttttctccttcccagcctccac 170
||||| ||||||||||||||| |||||
Sbjct: 30 aagctctttctccttcccagcatccac 4
>At5g35300.F
Length = 309
Score = 63.9 bits (32), Expect = 6e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 246 aggcagtagagtgtaacgggacttgtttggttgtattcacctca 289
|||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 68 aggcagtagagtgtaacggggcttgtttggttgtcatcacctca 111
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 170 ctccccaaccggctaagagaaccagacgctattctcaagctgttctt 216
|||||| |||| ||||||||||||| |||| ||||||||||||||||
Sbjct: 13 ctcccctaccgactaagagaaccaggcgctcttctcaagctgttctt 59
>PTA.sd.7111.C1 nseq=10
Length = 1704
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 197 gctattctcaagctgttc 214
||||||||||||||||||
Sbjct: 522 gctattctcaagctgttc 539
>PTA.sd.2665.C1 nseq=4
Length = 1942
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 125 atctcattctcctctga 141
|||||||||||||||||
Sbjct: 482 atctcattctcctctga 466
>PTA.sd.17836.C1 nseq=5
Length = 2048
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 58 tcctcctcctcatatct 74
|||||||||||||||||
Sbjct: 230 tcctcctcctcatatct 246
>PTA.sd.16540.C1 nseq=7
Length = 1398
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 264 ggacttgtttggttgta 280
|||||||||||||||||
Sbjct: 341 ggacttgtttggttgta 325
>At4g11490.F
Length = 1911
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4 gttgttgccaccggagt 20
|||||||||||||||||
Sbjct: 814 gttgttgccaccggagt 830
>At1g63210.F
Length = 3594
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 200 attctcaagctgttctt 216
|||||||||||||||||
Sbjct: 962 attctcaagctgttctt 978
>PTA.sd.252.C1 nseq=3
Length = 3183
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 53 ccagatcctcctcctc 68
||||||||||||||||
Sbjct: 257 ccagatcctcctcctc 242
>PTA.sd.16729.C1 nseq=19
Length = 2004
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 121 tttgatctcattctcc 136
||||||||||||||||
Sbjct: 340 tttgatctcattctcc 355
>PTA.sd.15281.C1 nseq=6
Length = 869
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3 cgttgttgccaccgga 18
||||||||||||||||
Sbjct: 106 cgttgttgccaccgga 121
>PTA.sd.13033.C1 nseq=8
Length = 1013
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 116 acttttttgatctcat 131
||||||||||||||||
Sbjct: 553 acttttttgatctcat 538
>PTA.sd.10562.C1 nseq=39
Length = 699
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 144 aagctttttctccttc 159
||||||||||||||||
Sbjct: 36 aagctttttctccttc 21
>At3g46240.F
Length = 1326
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 53 ccagatcctcctcctc 68
||||||||||||||||
Sbjct: 983 ccagatcctcctcctc 968
>At3g10170.F
Length = 1905
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 135 cctctgacaaagctttttct 154
|||||| |||||||||||||
Sbjct: 1264 cctctgtcaaagctttttct 1245
>At3g43240.F PTA.sd.9638.singlet
Length = 2154
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 141 acaaagctttttctc 155
|||||||||||||||
Sbjct: 731 acaaagctttttctc 745
>PTA.sd.9399.C1 nseq=8
Length = 1615
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 187 agaaccagacgctat 201
|||||||||||||||
Sbjct: 1093 agaaccagacgctat 1107
>PTA.sd.916.C1 nseq=15
Length = 2060
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 154 tccttcccagcctcc 168
|||||||||||||||
Sbjct: 1781 tccttcccagcctcc 1767
>PTA.sd.875.C1 nseq=3
Length = 1807
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 203 ctcaagctgttcttc 217
|||||||||||||||
Sbjct: 524 ctcaagctgttcttc 510
>PTA.sd.7190.C1 nseq=28
Length = 758
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 141 acaaagctttttctc 155
|||||||||||||||
Sbjct: 561 acaaagctttttctc 547
>PTA.sd.6666.C1 nseq=6
Length = 1879
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 122 ttgatctcattctcc 136
|||||||||||||||
Sbjct: 1486 ttgatctcattctcc 1500
>PTA.sd.6483.C1 nseq=16
Length = 1043
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 52 accagatcctcctcc 66
|||||||||||||||
Sbjct: 220 accagatcctcctcc 206
>PTA.sd.6208.C1 nseq=32
Length = 4478
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 135 cctctgacaaagctttttc 153
|||||||||||| ||||||
Sbjct: 3591 cctctgacaaagttttttc 3573
>PTA.sd.6108.C1 nseq=17
Length = 752
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 gacaaagctttttct 154
|||||||||||||||
Sbjct: 262 gacaaagctttttct 276
>PTA.sd.5834.C1 nseq=13
Length = 1292
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 51 caccagatcctcctc 65
|||||||||||||||
Sbjct: 1010 caccagatcctcctc 1024
>PTA.sd.5502.C1 nseq=8
Length = 852
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 54 cagatcctcctcctc 68
|||||||||||||||
Sbjct: 280 cagatcctcctcctc 266
>PTA.sd.4905.C1 nseq=2
Length = 1538
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 123 tgatctcattctcct 137
|||||||||||||||
Sbjct: 65 tgatctcattctcct 51
>PTA.sd.4512.C1 nseq=9
Length = 1284
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 50 ccaccagatcctcctcctc 68
|||||| ||||||||||||
Sbjct: 806 ccaccacatcctcctcctc 824
>PTA.sd.4434.C1 nseq=7
Length = 1495
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 tcagccgcatctttc 114
|||||||||||||||
Sbjct: 1437 tcagccgcatctttc 1451
>PTA.sd.3843.C1 nseq=3
Length = 1116
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 147 ctttttctccttccc 161
|||||||||||||||
Sbjct: 394 ctttttctccttccc 380
>PTA.sd.3507.C1 nseq=4
Length = 3839
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 tcttcaccatggttg 227
|||||||||||||||
Sbjct: 3059 tcttcaccatggttg 3073
>PTA.sd.17609.C1 nseq=10
Length = 1678
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 139 tgacaaagctttttc 153
|||||||||||||||
Sbjct: 1604 tgacaaagctttttc 1590
>PTA.sd.1695.C1 nseq=26
Length = 1345
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 54 cagatcctcctcctc 68
|||||||||||||||
Sbjct: 158 cagatcctcctcctc 172
>PTA.sd.16435.C1 nseq=2
Length = 1161
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 121 tttgatctcattctc 135
|||||||||||||||
Sbjct: 189 tttgatctcattctc 175
>PTA.sd.16312.C1 nseq=8
Length = 2122
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 tgttcttcaccatgg 224
|||||||||||||||
Sbjct: 170 tgttcttcaccatgg 184
>PTA.sd.16209.C1 nseq=11
Length = 1357
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 tgttcttcaccatgg 224
|||||||||||||||
Sbjct: 1009 tgttcttcaccatgg 1023
>PTA.sd.16085.C1 nseq=4
Length = 1854
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 ccactgaacccacca 55
|||||||||||||||
Sbjct: 815 ccactgaacccacca 801
>PTA.sd.15092.C1 nseq=5
Length = 994
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 109 tctttccactttttt 123
|||||||||||||||
Sbjct: 946 tctttccactttttt 960
>PTA.sd.15012.C1 nseq=9
Length = 1074
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 271 tttggttgtattcac 285
|||||||||||||||
Sbjct: 470 tttggttgtattcac 484
>PTA.sd.14909.C1 nseq=8
Length = 1286
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 204 tcaagctgttcttca 218
|||||||||||||||
Sbjct: 499 tcaagctgttcttca 513
>PTA.sd.14703.C1 nseq=10
Length = 1373
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 atcctcctcctcata 71
|||||||||||||||
Sbjct: 796 atcctcctcctcata 782
>PTA.sd.14536.C1 nseq=5
Length = 982
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 16 ggagtctccgccaga 30
|||||||||||||||
Sbjct: 354 ggagtctccgccaga 340
>PTA.sd.13902.C1 nseq=7
Length = 2083
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 126 tctcattctcctctg 140
|||||||||||||||
Sbjct: 1411 tctcattctcctctg 1425
>PTA.sd.13707.C1 nseq=6
Length = 5159
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 71 atctacattttcttc 85
|||||||||||||||
Sbjct: 3867 atctacattttcttc 3881
>PTA.sd.12953.C1 nseq=28
Length = 1786
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 217 caccatggttgctcc 231
|||||||||||||||
Sbjct: 847 caccatggttgctcc 833
>PTA.sd.12674.C1 nseq=22
Length = 1288
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 ccactgaacccacca 55
|||||||||||||||
Sbjct: 147 ccactgaacccacca 133
>PTA.sd.1256.C1 nseq=11
Length = 1419
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 268 ttgtttggttgtatt 282
|||||||||||||||
Sbjct: 1370 ttgtttggttgtatt 1384
>PTA.sd.1122.C1 nseq=30
Length = 1549
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 ctccttcccagcctc 167
|||||||||||||||
Sbjct: 719 ctccttcccagcctc 705
>PTA.sd.10850.C1 nseq=5
Length = 5455
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 210 tgttcttcaccatgg 224
|||||||||||||||
Sbjct: 2287 tgttcttcaccatgg 2273
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 289
length of database: 39,126,732
effective HSP length: 16
effective length of query: 273
effective length of database: 38,700,540
effective search space: 10565247420
effective search space used: 10565247420
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)