BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_23816
(290 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.10782.C1 nseq=7 575 e-164
PTA.sd.9745.C1 nseq=23 34 0.54
PTA.sd.3281.C1 nseq=2 34 0.54
PTA.sd.1714.C1 nseq=5 34 0.54
PTA.sd.16864.C1 nseq=8 34 0.54
PTA.sd.15049.C1 nseq=8 34 0.54
PTA.sd.14584.C1 nseq=10 34 0.54
PTA.sd.9851.C1 nseq=10 32 2.1
PTA.sd.9516.C1 nseq=5 32 2.1
PTA.sd.8269.C1 nseq=7 32 2.1
PTA.sd.5950.C1 nseq=4 32 2.1
PTA.sd.5298.C1 nseq=17 32 2.1
PTA.sd.5009.C1 nseq=8 32 2.1
PTA.sd.3096.C1 nseq=7 32 2.1
PTA.sd.2891.C1 nseq=2 32 2.1
>PTA.sd.10782.C1 nseq=7
Length = 1034
Score = 575 bits (290), Expect = e-164
Identities = 290/290 (100%)
Strand = Plus / Plus
Query: 1 cggcgacgatagctgtttttaccggtggtctgaaagtgaaggctggagttctcgccgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 cggcgacgatagctgtttttaccggtggtctgaaagtgaaggctggagttctcgccgttc 135
Query: 61 aaatctcatcgcttcctctccgccgcgaattccctcgttacttgtcgtcttcctcgagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 aaatctcatcgcttcctctccgccgcgaattccctcgttacttgtcgtcttcctcgagga 195
Query: 121 ggacagtagcggcaatctcctcgtctcttcgagtctccgccgtatataaccatcagcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ggacagtagcggcaatctcctcgtctcttcgagtctccgccgtatataaccatcagcagc 255
Query: 181 gtaatcgaagctcttggcctcgagttgctactttctgtacggcggctccagatgccggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtaatcgaagctcttggcctcgagttgctactttctgtacggcggctccagatgccggca 315
Query: 241 cgacggtttcagcggatgaatcggagaagaagagcgaatctcagaaggaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cgacggtttcagcggatgaatcggagaagaagagcgaatctcagaaggaa 365
>PTA.sd.9745.C1 nseq=23
Length = 3246
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 265 agaagaagagcgaatct 281
|||||||||||||||||
Sbjct: 1310 agaagaagagcgaatct 1326
>PTA.sd.3281.C1 nseq=2
Length = 1823
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 255 gatgaatcggagaagaa 271
|||||||||||||||||
Sbjct: 1475 gatgaatcggagaagaa 1459
>PTA.sd.1714.C1 nseq=5
Length = 1117
Score = 34.2 bits (17), Expect = 0.54
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 181 gtaatcgaagctcttggcctc 201
|||||||||||||||| ||||
Sbjct: 113 gtaatcgaagctcttgccctc 133
>PTA.sd.16864.C1 nseq=8
Length = 2423
Score = 34.2 bits (17), Expect = 0.54
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 46 gagttctcgccgttcaaatct 66
|||||||||||||| ||||||
Sbjct: 899 gagttctcgccgttgaaatct 919
>PTA.sd.15049.C1 nseq=8
Length = 1308
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 257 tgaatcggagaagaaga 273
|||||||||||||||||
Sbjct: 49 tgaatcggagaagaaga 65
>PTA.sd.14584.C1 nseq=10
Length = 1233
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 258 gaatcggagaagaagag 274
|||||||||||||||||
Sbjct: 156 gaatcggagaagaagag 140
>PTA.sd.9851.C1 nseq=10
Length = 1390
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 258 gaatcggagaagaaga 273
||||||||||||||||
Sbjct: 43 gaatcggagaagaaga 58
>PTA.sd.9516.C1 nseq=5
Length = 1230
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 154 tctccgccgtatataa 169
||||||||||||||||
Sbjct: 522 tctccgccgtatataa 537
>PTA.sd.8269.C1 nseq=7
Length = 889
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 258 gaatcggagaagaaga 273
||||||||||||||||
Sbjct: 191 gaatcggagaagaaga 176
>PTA.sd.5950.C1 nseq=4
Length = 1151
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 136 tctcctcgtctcttcg 151
||||||||||||||||
Sbjct: 32 tctcctcgtctcttcg 47
>PTA.sd.5298.C1 nseq=17
Length = 3810
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 203 agttgctactttctgt 218
||||||||||||||||
Sbjct: 1200 agttgctactttctgt 1215
>PTA.sd.5009.C1 nseq=8
Length = 2258
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 255 gatgaatcggagaaga 270
||||||||||||||||
Sbjct: 86 gatgaatcggagaaga 71
>PTA.sd.3096.C1 nseq=7
Length = 1366
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 263 ggagaagaagagcgaa 278
||||||||||||||||
Sbjct: 1170 ggagaagaagagcgaa 1185
>PTA.sd.2891.C1 nseq=2
Length = 1448
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 78 ctccgccgcgaattcc 93
||||||||||||||||
Sbjct: 887 ctccgccgcgaattcc 872
>PTA.sd.2865.C1 nseq=9
Length = 2243
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 258 gaatcggagaagaaga 273
||||||||||||||||
Sbjct: 1147 gaatcggagaagaaga 1162
>PTA.sd.16875.C1 nseq=3
Length = 909
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 225 gctccagatgccggca 240
||||||||||||||||
Sbjct: 374 gctccagatgccggca 389
>PTA.sd.16099.C1 nseq=14
Length = 1107
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 258 gaatcggagaagaaga 273
||||||||||||||||
Sbjct: 28 gaatcggagaagaaga 13
>At5g62560.F PTA.sd.17659.singlet
Length = 1602
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 260 atcggagaagaagag 274
|||||||||||||||
Sbjct: 617 atcggagaagaagag 603
>At4g12910.F PTA.sd.11714.singlet
Length = 1371
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 257 tgaatcggagaagaa 271
|||||||||||||||
Sbjct: 192 tgaatcggagaagaa 206
>PTA.sd.9792.C1 nseq=7
Length = 1376
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 260 atcggagaagaagag 274
|||||||||||||||
Sbjct: 78 atcggagaagaagag 64
>PTA.sd.9305.C1 nseq=13
Length = 3481
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 aatcggagaagaaga 273
|||||||||||||||
Sbjct: 832 aatcggagaagaaga 846
>PTA.sd.9284.C1 nseq=4
Length = 1328
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 256 atgaatcggagaagaagag 274
|||||| ||||||||||||
Sbjct: 106 atgaatgggagaagaagag 88
>PTA.sd.9164.C1 nseq=5
Length = 979
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 77 tctccgccgcgaatt 91
|||||||||||||||
Sbjct: 332 tctccgccgcgaatt 318
>PTA.sd.8946.C1 nseq=3
Length = 2765
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 tctcctcgtctcttc 150
|||||||||||||||
Sbjct: 260 tctcctcgtctcttc 274
>PTA.sd.79.C1 nseq=6
Length = 6681
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 gagttgctactttct 216
|||||||||||||||
Sbjct: 3346 gagttgctactttct 3332
>PTA.sd.7264.C1 nseq=4
Length = 2431
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 172 atcagcagcgtaatc 186
|||||||||||||||
Sbjct: 913 atcagcagcgtaatc 899
>PTA.sd.7165.C1 nseq=8
Length = 934
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 77 tctccgccgcgaatt 91
|||||||||||||||
Sbjct: 419 tctccgccgcgaatt 405
>PTA.sd.7038.C1 nseq=32
Length = 3378
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 34 aagtgaaggctggag 48
|||||||||||||||
Sbjct: 1762 aagtgaaggctggag 1748
>PTA.sd.6784.C1 nseq=9
Length = 1689
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 12 gctgtttttaccggtggtc 30
||||||| |||||||||||
Sbjct: 378 gctgtttataccggtggtc 360
>PTA.sd.5658.C1 nseq=7
Length = 1667
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 61 aaatctcatcgcttcctct 79
|||||||||||||| ||||
Sbjct: 518 aaatctcatcgctttctct 536
>PTA.sd.4366.C1 nseq=28
Length = 2384
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 262 cggagaagaagagcg 276
|||||||||||||||
Sbjct: 276 cggagaagaagagcg 262
>PTA.sd.3686.C1 nseq=5
Length = 1919
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 atctcctcgtctctt 149
|||||||||||||||
Sbjct: 1268 atctcctcgtctctt 1254
>PTA.sd.3411.C1 nseq=8
Length = 1419
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 256 atgaatcggagaaga 270
|||||||||||||||
Sbjct: 174 atgaatcggagaaga 160
>PTA.sd.2806.C1 nseq=17
Length = 2739
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 260 atcggagaagaagag 274
|||||||||||||||
Sbjct: 29 atcggagaagaagag 15
>PTA.sd.2496.C1 nseq=6
Length = 1680
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 97 gttacttgtcgtcttcctc 115
||||| |||||||||||||
Sbjct: 40 gttacctgtcgtcttcctc 58
>PTA.sd.2350.C1 nseq=5
Length = 1127
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 14 tgtttttaccggtgg 28
|||||||||||||||
Sbjct: 486 tgtttttaccggtgg 500
>PTA.sd.17905.C1 nseq=2
Length = 2275
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 150 cgagtctccgccgta 164
|||||||||||||||
Sbjct: 150 cgagtctccgccgta 136
>PTA.sd.16559.C1 nseq=10
Length = 1187
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 77 tctccgccgcgaatt 91
|||||||||||||||
Sbjct: 646 tctccgccgcgaatt 632
>PTA.sd.16558.C1 nseq=5
Length = 964
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 77 tctccgccgcgaatt 91
|||||||||||||||
Sbjct: 464 tctccgccgcgaatt 450
>PTA.sd.16338.C1 nseq=11
Length = 3427
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 55 ccgttcaaatctcat 69
|||||||||||||||
Sbjct: 923 ccgttcaaatctcat 909
>PTA.sd.15818.C1 nseq=12
Length = 2161
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 258 gaatcggagaagaag 272
|||||||||||||||
Sbjct: 89 gaatcggagaagaag 103
>PTA.sd.15612.C1 nseq=8
Length = 2496
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 246 gtttcagcggatgaa 260
|||||||||||||||
Sbjct: 1468 gtttcagcggatgaa 1482
>PTA.sd.15088.C1 nseq=2
Length = 581
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 265 agaagaagagcgaat 279
|||||||||||||||
Sbjct: 157 agaagaagagcgaat 171
>PTA.sd.14950.C1 nseq=16
Length = 1447
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 ggtctgaaagtgaag 41
|||||||||||||||
Sbjct: 546 ggtctgaaagtgaag 532
>PTA.sd.14938.C1 nseq=2
Length = 1190
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 255 gatgaatcggagaagaaga 273
||||||| |||||||||||
Sbjct: 1178 gatgaataggagaagaaga 1160
>PTA.sd.1456.C1 nseq=7
Length = 1447
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 264 gagaagaagagcgaa 278
|||||||||||||||
Sbjct: 790 gagaagaagagcgaa 776
>PTA.sd.14180.C1 nseq=19
Length = 1223
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 259 aatcggagaagaaga 273
|||||||||||||||
Sbjct: 88 aatcggagaagaaga 74
>PTA.sd.14122.C1 nseq=10
Length = 3092
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 aatcggagaagaaga 273
|||||||||||||||
Sbjct: 20 aatcggagaagaaga 34
>PTA.sd.13897.C1 nseq=4
Length = 4657
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 261 tcggagaagaagagcgaat 279
|||||||||||||| ||||
Sbjct: 4480 tcggagaagaagagtgaat 4498
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 290
length of database: 39,126,732
effective HSP length: 16
effective length of query: 274
effective length of database: 38,700,540
effective search space: 10603947960
effective search space used: 10603947960
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)