BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_23792
(290 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.3316.C1 nseq=8 575 e-164
At2g02020.F PTA.sd.4790.singlet 56 1e-07
PTA.sd.4791.C1 nseq=22 40 0.009
PTA.sd.2453.C1 nseq=7 34 0.54
At5g03500.F 34 0.54
At4g16200.F 34 0.54
At1g61490.F 34 0.54
PTA.sd.7568.C1 nseq=142 32 2.1
PTA.sd.6635.C1 nseq=15 32 2.1
PTA.sd.6526.C1 nseq=3 32 2.1
PTA.sd.6339.C1 nseq=7 32 2.1
PTA.sd.16216.C1 nseq=8 32 2.1
PTA.sd.10684.C1 nseq=5 32 2.1
At5g14940.F PTA.sd.14886.singlet 30 8.4
At4g25920.F PTA.sd.12704.singlet 30 8.4
>PTA.sd.3316.C1 nseq=8
Length = 1910
Score = 575 bits (290), Expect = e-164
Identities = 290/290 (100%)
Strand = Plus / Plus
Query: 1 ctgcttcattcggggttttcgacacacttatcgtgctcatatccatcccaatatatgacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 ctgcttcattcggggttttcgacacacttatcgtgctcatatccatcccaatatatgacc 1293
Query: 61 gtttcctcgtaccctttgtaagacggttcacagggataccaaaagggttaactgatctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 gtttcctcgtaccctttgtaagacggttcacagggataccaaaagggttaactgatctgc 1353
Query: 121 agcgaatgggcattggtctttttctctctgtcctaagcattgcagctgcagctattgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 agcgaatgggcattggtctttttctctctgtcctaagcattgcagctgcagctattgttg 1413
Query: 181 agacagtgcggttgcagcttgctcaagactttgttgcaatgagcatattttggcagatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1414 agacagtgcggttgcagcttgctcaagactttgttgcaatgagcatattttggcagatcc 1473
Query: 241 ctcagtacatactaatgggaatagcagaggtctttttcttcattggtcga 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1474 ctcagtacatactaatgggaatagcagaggtctttttcttcattggtcga 1523
>At2g02020.F PTA.sd.4790.singlet
Length = 1638
Score = 56.0 bits (28), Expect = 1e-07
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 36 ctcatatccatcccaatatatgaccgtttcctcgtaccctttgtaagacggttcacaggg 95
|||||||| ||||||| |||||||| || |||| ||||| || ||||||||||||||
Sbjct: 1093 ctcatatctgtcccaatctatgaccgcgtcatcgttcccttagtgagacggttcacaggc 1152
Query: 96 ataccaaaagggttaactgatctgcagcgaatgggcattggtctttttctctctgt 151
|| | ||||| || || || || || ||||||| |||||||||||| |||||||
Sbjct: 1153 ttagctaaaggattcaccgagctacaaagaatggggattggtctttttgtctctgt 1208
Score = 34.2 bits (17), Expect = 0.54
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 228 ttttggcagatccctcagtac 248
|||||||| ||||||||||||
Sbjct: 1309 ttttggcaaatccctcagtac 1329
>PTA.sd.4791.C1 nseq=22
Length = 2003
Score = 40.1 bits (20), Expect = 0.009
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 124 gaatgggcattggtctttttctctctgtcctaagcattgcagctgcagctat 175
||||||| |||||||| ||| ||||||| || | || ||||||||||||||
Sbjct: 1408 gaatgggaattggtctgtttgtctctgttctctgtatggcagctgcagctat 1459
>PTA.sd.2453.C1 nseq=7
Length = 1622
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 86 gttcacagggataccaa 102
|||||||||||||||||
Sbjct: 376 gttcacagggataccaa 360
>At5g03500.F
Length = 747
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 31 tcgtgctcatatccatc 47
|||||||||||||||||
Sbjct: 682 tcgtgctcatatccatc 666
>At4g16200.F
Length = 867
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 169 cagctattgttgagaca 185
|||||||||||||||||
Sbjct: 305 cagctattgttgagaca 321
>At1g61490.F
Length = 2415
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 85 ggttcacagggatacca 101
|||||||||||||||||
Sbjct: 641 ggttcacagggatacca 657
>PTA.sd.7568.C1 nseq=142
Length = 1881
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 165 gctgcagctattgttg 180
||||||||||||||||
Sbjct: 1613 gctgcagctattgttg 1598
>PTA.sd.6635.C1 nseq=15
Length = 2023
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 136 gtctttttctctctgt 151
||||||||||||||||
Sbjct: 23 gtctttttctctctgt 8
>PTA.sd.6526.C1 nseq=3
Length = 1441
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 229 tttggcagatccctca 244
||||||||||||||||
Sbjct: 308 tttggcagatccctca 293
>PTA.sd.6339.C1 nseq=7
Length = 636
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 271 tctttttcttcattgg 286
||||||||||||||||
Sbjct: 445 tctttttcttcattgg 430
>PTA.sd.16216.C1 nseq=8
Length = 2121
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 247 acatactaatgggaat 262
||||||||||||||||
Sbjct: 1743 acatactaatgggaat 1758
>PTA.sd.10684.C1 nseq=5
Length = 2564
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 133 ttggtctttttctctc 148
||||||||||||||||
Sbjct: 28 ttggtctttttctctc 13
>At5g14940.F PTA.sd.14886.singlet
Length = 1659
Score = 30.2 bits (15), Expect = 8.4
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 240 cctcagtacatactaatgggaat 262
||||||||||| ||| |||||||
Sbjct: 1306 cctcagtacattctattgggaat 1328
>At4g25920.F PTA.sd.12704.singlet
Length = 1098
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 tttcctcgtaccctt 76
|||||||||||||||
Sbjct: 51 tttcctcgtaccctt 65
>At2g34900.F PTA.sd.6390.singlet
Length = 1203
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 271 tctttttcttcattg 285
|||||||||||||||
Sbjct: 572 tctttttcttcattg 558
>PTA.sd.9295.C1 nseq=12
Length = 1986
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 35 gctcatatccatccc 49
|||||||||||||||
Sbjct: 918 gctcatatccatccc 904
>PTA.sd.8602.C1 nseq=4
Length = 914
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 gttgcaatgagcata 227
|||||||||||||||
Sbjct: 527 gttgcaatgagcata 541
>PTA.sd.8242.C1 nseq=22
Length = 1651
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 42 tccatcccaatatat 56
|||||||||||||||
Sbjct: 988 tccatcccaatatat 974
>PTA.sd.7963.C1 nseq=5
Length = 1697
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 160 ttgcagctgcagcta 174
|||||||||||||||
Sbjct: 500 ttgcagctgcagcta 514
>PTA.sd.6000.C1 nseq=32
Length = 1243
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 30 atcgtgctcatatcc 44
|||||||||||||||
Sbjct: 567 atcgtgctcatatcc 581
>PTA.sd.5833.C1 nseq=11
Length = 2259
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 253 taatgggaatagcag 267
|||||||||||||||
Sbjct: 257 taatgggaatagcag 271
>PTA.sd.5424.C1 nseq=35
Length = 733
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 tctttttctctctgt 151
|||||||||||||||
Sbjct: 592 tctttttctctctgt 606
>PTA.sd.4514.C1 nseq=9
Length = 1504
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 41 atccatcccaatata 55
|||||||||||||||
Sbjct: 400 atccatcccaatata 414
>PTA.sd.3887.C1 nseq=20
Length = 11197
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 gctattgttgagaca 185
|||||||||||||||
Sbjct: 1800 gctattgttgagaca 1786
>PTA.sd.3042.C1 nseq=18
Length = 12017
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 gctattgttgagaca 185
|||||||||||||||
Sbjct: 2541 gctattgttgagaca 2527
>PTA.sd.2930.C1 nseq=3
Length = 2427
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 126 atgggcattggtctt 140
|||||||||||||||
Sbjct: 2341 atgggcattggtctt 2355
>PTA.sd.17868.C1 nseq=26
Length = 2068
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 tgttgcaatgagcat 226
|||||||||||||||
Sbjct: 1249 tgttgcaatgagcat 1263
>PTA.sd.17458.C1 nseq=3
Length = 2026
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 104 agggttaactgatct 118
|||||||||||||||
Sbjct: 1313 agggttaactgatct 1327
>PTA.sd.16970.C1 nseq=3
Length = 1309
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 34 tgctcatatccatcc 48
|||||||||||||||
Sbjct: 539 tgctcatatccatcc 525
>PTA.sd.15329.C1 nseq=6
Length = 3770
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 162 gcagctgcagctattgttg 180
||||||||||| |||||||
Sbjct: 1509 gcagctgcagcaattgttg 1527
>PTA.sd.14930.C1 nseq=44
Length = 1354
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 attgttgagacagtg 188
|||||||||||||||
Sbjct: 185 attgttgagacagtg 171
>PTA.sd.13243.C1 nseq=4
Length = 1172
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 161 tgcagctgcagctat 175
|||||||||||||||
Sbjct: 833 tgcagctgcagctat 819
>PTA.sd.12359.C1 nseq=10
Length = 2147
Score = 30.2 bits (15), Expect = 8.4
Identities = 27/31 (87%)
Strand = Plus / Plus
Query: 220 tgagcatattttggcagatccctcagtacat 250
||||||| |||||||| | |||||||||||
Sbjct: 1575 tgagcattttttggcaagtacctcagtacat 1605
>PTA.sd.11647.C1 nseq=2
Length = 5688
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 38 catatccatcccaat 52
|||||||||||||||
Sbjct: 2463 catatccatcccaat 2449
>PTA.sd.10022.C1 nseq=15
Length = 897
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 16 ttttcgacacactta 30
|||||||||||||||
Sbjct: 440 ttttcgacacactta 426
>At4g20160.F
Length = 3567
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 255 atgggaatagcagag 269
|||||||||||||||
Sbjct: 1909 atgggaatagcagag 1923
>At3g29080.F
Length = 1338
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 139 tttttctctctgtcc 153
|||||||||||||||
Sbjct: 1297 tttttctctctgtcc 1283
>At2g14940.F
Length = 3450
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 ggtctttttctctct 149
|||||||||||||||
Sbjct: 3280 ggtctttttctctct 3294
>At1g75550.F
Length = 504
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 275 tttcttcattggtcg 289
|||||||||||||||
Sbjct: 11 tttcttcattggtcg 25
>At1g70110.F
Length = 2001
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 42 tccatcccaatatat 56
|||||||||||||||
Sbjct: 763 tccatcccaatatat 749
>At1g35600.F
Length = 1713
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 tattgttgagacagt 187
|||||||||||||||
Sbjct: 575 tattgttgagacagt 589
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 290
length of database: 39,126,732
effective HSP length: 16
effective length of query: 274
effective length of database: 38,700,540
effective search space: 10603947960
effective search space used: 10603947960
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)