BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_23722
(291 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07505.F 577 e-164
PTA.sd.8416.C1 nseq=32 34 0.54
PTA.sd.342.C1 nseq=10 34 0.54
PTA.sd.1862.C1 nseq=2 34 0.54
At5g07850.F 34 0.54
At2g43480.F 34 0.54
At2g16180.F 34 0.54
At1g79490.F 34 0.54
PTA.sd.9833.C1 nseq=3 32 2.1
PTA.sd.8236.C1 nseq=6 32 2.1
PTA.sd.8058.C1 nseq=5 32 2.1
PTA.sd.6446.C1 nseq=6 32 2.1
PTA.sd.5621.C1 nseq=10 32 2.1
PTA.sd.4776.C1 nseq=9 32 2.1
PTA.sd.3199.C1 nseq=9 32 2.1
>At2g07505.F
Length = 432
Score = 577 bits (291), Expect = e-164
Identities = 291/291 (100%)
Strand = Plus / Plus
Query: 1 tggtcacttgtttaggttgacagatgaagtaatggtggaagagatggaagacatacttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tggtcacttgtttaggttgacagatgaagtaatggtggaagagatggaagacatacttcc 191
Query: 61 aaagattgatgaacttgaaggggcttcattgaccttacaaaaagggttacaagctttaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 aaagattgatgaacttgaaggggcttcattgaccttacaaaaagggttacaagctttaga 251
Query: 121 atttgagatggaaactctggcaatggagactcgtacatgtgaagctgtggtttgcggcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 atttgagatggaaactctggcaatggagactcgtacatgtgaagctgtggtttgcggcta 311
Query: 181 tgagaaggagctgctaggtttagagaaggagattcaaggttgcaagattgaattgcgtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgagaaggagctgctaggtttagagaaggagattcaaggttgcaagattgaattgcgtgg 371
Query: 241 gttgaagaagattcttgtgtgtaaagtgttgatgactcttgtctatgtgtt 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gttgaagaagattcttgtgtgtaaagtgttgatgactcttgtctatgtgtt 422
>PTA.sd.8416.C1 nseq=32
Length = 2799
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 115 tttagaatttgagatgg 131
|||||||||||||||||
Sbjct: 2711 tttagaatttgagatgg 2727
>PTA.sd.342.C1 nseq=10
Length = 2888
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 157 atgtgaagctgtggttt 173
|||||||||||||||||
Sbjct: 811 atgtgaagctgtggttt 827
>PTA.sd.1862.C1 nseq=2
Length = 906
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 200 ttagagaaggagattca 216
|||||||||||||||||
Sbjct: 649 ttagagaaggagattca 665
>At5g07850.F
Length = 1371
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 47 gaagacatacttccaaa 63
|||||||||||||||||
Sbjct: 1303 gaagacatacttccaaa 1287
>At2g43480.F
Length = 1008
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 158 tgtgaagctgtggtttg 174
|||||||||||||||||
Sbjct: 789 tgtgaagctgtggtttg 773
>At2g16180.F
Length = 3657
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 240 ggttgaagaagattctt 256
|||||||||||||||||
Sbjct: 1902 ggttgaagaagattctt 1918
>At1g79490.F
Length = 2511
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 183 agaaggagctgctaggt 199
|||||||||||||||||
Sbjct: 1977 agaaggagctgctaggt 1993
>PTA.sd.9833.C1 nseq=3
Length = 2056
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 203 gagaaggagattcaag 218
||||||||||||||||
Sbjct: 945 gagaaggagattcaag 960
>PTA.sd.8236.C1 nseq=6
Length = 1697
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 258 tgtgtaaagtgttgat 273
||||||||||||||||
Sbjct: 1133 tgtgtaaagtgttgat 1118
>PTA.sd.8058.C1 nseq=5
Length = 4819
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 27 aagtaatggtggaaga 42
||||||||||||||||
Sbjct: 4775 aagtaatggtggaaga 4790
>PTA.sd.6446.C1 nseq=6
Length = 6443
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1 tggtcacttgtttagg 16
||||||||||||||||
Sbjct: 312 tggtcacttgtttagg 327
>PTA.sd.5621.C1 nseq=10
Length = 2306
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 31 aatggtggaagagatg 46
||||||||||||||||
Sbjct: 1633 aatggtggaagagatg 1648
>PTA.sd.4776.C1 nseq=9
Length = 2808
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 244 gaagaagattcttgtg 259
||||||||||||||||
Sbjct: 2124 gaagaagattcttgtg 2139
>PTA.sd.3199.C1 nseq=9
Length = 1525
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 66 ttgatgaacttgaagg 81
||||||||||||||||
Sbjct: 415 ttgatgaacttgaagg 430
>PTA.sd.18014.C1 nseq=3
Length = 960
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 200 ttagagaaggagattc 215
||||||||||||||||
Sbjct: 84 ttagagaaggagattc 69
>PTA.sd.17048.C1 nseq=7
Length = 1586
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 66 ttgatgaacttgaagg 81
||||||||||||||||
Sbjct: 499 ttgatgaacttgaagg 514
>PTA.sd.16649.C1 nseq=6
Length = 1528
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 175 cggctatgagaaggag 190
||||||||||||||||
Sbjct: 297 cggctatgagaaggag 282
>PTA.sd.12591.C1 nseq=4
Length = 3678
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 241 gttgaagaagattctt 256
||||||||||||||||
Sbjct: 3042 gttgaagaagattctt 3057
>PTA.sd.11860.C1 nseq=5
Length = 1518
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 113 gctttagaatttgaga 128
||||||||||||||||
Sbjct: 1241 gctttagaatttgaga 1256
>PTA.sd.10013.C1 nseq=6
Length = 1063
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 242 ttgaagaagattcttg 257
||||||||||||||||
Sbjct: 943 ttgaagaagattcttg 958
>At5g61950.F
Length = 3399
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 240 ggttgaagaagattct 255
||||||||||||||||
Sbjct: 2310 ggttgaagaagattct 2325
>At2g35770.F
Length = 1344
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 242 ttgaagaagattcttg 257
||||||||||||||||
Sbjct: 1053 ttgaagaagattcttg 1038
>At1g66610.F
Length = 1101
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 31 aatggtggaagagatg 46
||||||||||||||||
Sbjct: 421 aatggtggaagagatg 436
>At1g18780.F
Length = 978
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 265 agtgttgatgactctt 280
||||||||||||||||
Sbjct: 396 agtgttgatgactctt 411
>At5g17890.F PTA.sd.15108.singlet
Length = 4728
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 67 tgatgaacttgaagg 81
|||||||||||||||
Sbjct: 1440 tgatgaacttgaagg 1454
>At4g39280.F PTA.sd.13799.singlet
Length = 1287
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 244 gaagaagattcttgt 258
|||||||||||||||
Sbjct: 769 gaagaagattcttgt 755
>At3g57180.F PTA.sd.10580.singlet
Length = 1914
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 202 agagaaggagattca 216
|||||||||||||||
Sbjct: 1602 agagaaggagattca 1616
>At1g17920.F PTA.sd.1317.singlet
Length = 2064
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 28 agtaatggtggaaga 42
|||||||||||||||
Sbjct: 488 agtaatggtggaaga 474
>PTA.sd.8746.C1 nseq=5
Length = 1186
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 238 tgggttgaagaagat 252
|||||||||||||||
Sbjct: 41 tgggttgaagaagat 55
>PTA.sd.8492.C1 nseq=8
Length = 1622
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 238 tgggttgaagaagat 252
|||||||||||||||
Sbjct: 1405 tgggttgaagaagat 1419
>PTA.sd.8346.C1 nseq=5
Length = 818
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 220 ttgcaagattgaatt 234
|||||||||||||||
Sbjct: 177 ttgcaagattgaatt 163
>PTA.sd.8279.C1 nseq=5
Length = 1673
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 tggtggaagagatgg 47
|||||||||||||||
Sbjct: 1223 tggtggaagagatgg 1237
>PTA.sd.7484.C1 nseq=12
Length = 6933
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 ccaaagattgatgaa 73
|||||||||||||||
Sbjct: 1450 ccaaagattgatgaa 1464
>PTA.sd.735.C1 nseq=12
Length = 3778
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 59 ccaaagattgatgaa 73
|||||||||||||||
Sbjct: 1976 ccaaagattgatgaa 1962
>PTA.sd.6691.C1 nseq=5
Length = 1479
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 gagatggaaactctg 139
|||||||||||||||
Sbjct: 688 gagatggaaactctg 702
>PTA.sd.6630.C1 nseq=9
Length = 2858
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 265 agtgttgatgactct 279
|||||||||||||||
Sbjct: 781 agtgttgatgactct 795
>PTA.sd.5773.C1 nseq=4
Length = 1536
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 ggttacaagctttag 119
|||||||||||||||
Sbjct: 445 ggttacaagctttag 459
>PTA.sd.4558.C1 nseq=19
Length = 1614
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 242 ttgaagaagattctt 256
|||||||||||||||
Sbjct: 589 ttgaagaagattctt 575
>PTA.sd.4450.C1 nseq=2
Length = 4000
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 262 taaagtgttgatgac 276
|||||||||||||||
Sbjct: 3944 taaagtgttgatgac 3958
>PTA.sd.3893.C1 nseq=2
Length = 2417
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 37 ggaagagatggaaga 51
|||||||||||||||
Sbjct: 448 ggaagagatggaaga 434
>PTA.sd.363.C2 nseq=3
Length = 876
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 266 gtgttgatgactctt 280
|||||||||||||||
Sbjct: 138 gtgttgatgactctt 152
>PTA.sd.3277.C1 nseq=6
Length = 1376
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 155 acatgtgaagctgtg 169
|||||||||||||||
Sbjct: 258 acatgtgaagctgtg 272
>PTA.sd.2911.C1 nseq=8
Length = 2131
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 gctttagaatttgag 127
|||||||||||||||
Sbjct: 1264 gctttagaatttgag 1278
>PTA.sd.2461.C1 nseq=27
Length = 1970
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 tttagagaaggagat 213
|||||||||||||||
Sbjct: 130 tttagagaaggagat 116
>PTA.sd.2033.C1 nseq=5
Length = 1341
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 gaagagatggaagac 52
|||||||||||||||
Sbjct: 188 gaagagatggaagac 202
>PTA.sd.17082.C1 nseq=7
Length = 2835
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 240 ggttgaagaagattc 254
|||||||||||||||
Sbjct: 2430 ggttgaagaagattc 2416
>PTA.sd.17046.C1 nseq=95
Length = 1404
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 243 tgaagaagattcttg 257
|||||||||||||||
Sbjct: 643 tgaagaagattcttg 657
>PTA.sd.16986.C1 nseq=3
Length = 2079
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 31 aatggtggaagagat 45
|||||||||||||||
Sbjct: 1753 aatggtggaagagat 1767
>PTA.sd.16849.C1 nseq=12
Length = 2848
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 attcaaggttgcaag 226
|||||||||||||||
Sbjct: 1101 attcaaggttgcaag 1087
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 291
length of database: 39,126,732
effective HSP length: 16
effective length of query: 275
effective length of database: 38,700,540
effective search space: 10642648500
effective search space used: 10642648500
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)