BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_23698
(291 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.2066.C1 nseq=4 577 e-164
PTA.sd.9120.C1 nseq=9 36 0.14
PTA.sd.7034.C1 nseq=3 36 0.14
PTA.sd.6662.C1 nseq=8 36 0.14
At3g14670.F 36 0.14
PTA.sd.6347.C1 nseq=5 34 0.54
PTA.sd.6134.C1 nseq=2 34 0.54
PTA.sd.5302.C1 nseq=6 34 0.54
PTA.sd.3185.C1 nseq=5 34 0.54
At5g26010.F PTA.sd.15672.singlet 32 2.1
At1g64180.F PTA.sd.3435.singlet 32 2.1
PTA.sd.9502.C1 nseq=2 32 2.1
PTA.sd.9394.C1 nseq=17 32 2.1
PTA.sd.8993.C1 nseq=14 32 2.1
PTA.sd.8535.C1 nseq=7 32 2.1
>PTA.sd.2066.C1 nseq=4
Length = 783
Score = 577 bits (291), Expect = e-164
Identities = 291/291 (100%)
Strand = Plus / Plus
Query: 1 ttcgacgaatctgagatcattttctctgacaattactttccgattcgccggcgagaagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ttcgacgaatctgagatcattttctctgacaattactttccgattcgccggcgagaagac 173
Query: 61 ggtaacgagaaagagaataaccgtccggtggatttccgggaaaattctgagagagtgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ggtaacgagaaagagaataaccgtccggtggatttccgggaaaattctgagagagtgtgg 233
Query: 121 aacaagtcatctagacggagtaaaacgacgccgttgccttcagcggtgacggcgttttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aacaagtcatctagacggagtaaaacgacgccgttgccttcagcggtgacggcgttttct 293
Query: 181 agttcgcttccggttaacataccgatgaggaggtattcgacggaggaggaatattccgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 agttcgcttccggttaacataccgatgaggaggtattcgacggaggaggaatattccgat 353
Query: 241 gacgacggaggaaggaaaatgattccgccgcatttgatagttggacggagg 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gacgacggaggaaggaaaatgattccgccgcatttgatagttggacggagg 404
>PTA.sd.9120.C1 nseq=9
Length = 1456
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 138 gagtaaaacgacgccgtt 155
||||||||||||||||||
Sbjct: 574 gagtaaaacgacgccgtt 591
>PTA.sd.7034.C1 nseq=3
Length = 926
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 115 gtgtggaacaagtcatct 132
||||||||||||||||||
Sbjct: 628 gtgtggaacaagtcatct 645
>PTA.sd.6662.C1 nseq=8
Length = 2415
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 247 ggaggaaggaaaatgatt 264
||||||||||||||||||
Sbjct: 2158 ggaggaaggaaaatgatt 2175
>At3g14670.F
Length = 699
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 235 tccgatgacgacggagga 252
||||||||||||||||||
Sbjct: 99 tccgatgacgacggagga 116
>PTA.sd.6347.C1 nseq=5
Length = 817
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 223 gaggaggaatattccga 239
|||||||||||||||||
Sbjct: 389 gaggaggaatattccga 405
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 atgattccgccgcat 273
|||||||||||||||
Sbjct: 419 atgattccgccgcat 433
>PTA.sd.6134.C1 nseq=2
Length = 1686
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 59 acggtaacgagaaagag 75
|||||||||||||||||
Sbjct: 432 acggtaacgagaaagag 416
>PTA.sd.5302.C1 nseq=6
Length = 857
Score = 34.2 bits (17), Expect = 0.54
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 218 cgacggaggaggaatattccg 238
||||||||||||||| |||||
Sbjct: 82 cgacggaggaggaatcttccg 62
>PTA.sd.3185.C1 nseq=5
Length = 1649
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 60 cggtaacgagaaagaga 76
|||||||||||||||||
Sbjct: 1155 cggtaacgagaaagaga 1171
>At5g26010.F PTA.sd.15672.singlet
Length = 1014
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 53 gagaagacggtaacga 68
||||||||||||||||
Sbjct: 31 gagaagacggtaacga 16
>At1g64180.F PTA.sd.3435.singlet
Length = 2151
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 143 aaacgacgccgttgcc 158
||||||||||||||||
Sbjct: 1812 aaacgacgccgttgcc 1797
>PTA.sd.9502.C1 nseq=2
Length = 905
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 142 aaaacgacgccgttgc 157
||||||||||||||||
Sbjct: 72 aaaacgacgccgttgc 57
>PTA.sd.9394.C1 nseq=17
Length = 1294
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 222 ggaggaggaatattccgatg 241
|||||||||||||| |||||
Sbjct: 364 ggaggaggaatatttcgatg 383
>PTA.sd.8993.C1 nseq=14
Length = 1302
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 137 ggagtaaaacgacgccgttg 156
|||||||||||||| |||||
Sbjct: 81 ggagtaaaacgacgacgttg 62
>PTA.sd.8535.C1 nseq=7
Length = 1604
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 16 atcattttctctgaca 31
||||||||||||||||
Sbjct: 376 atcattttctctgaca 391
>PTA.sd.8408.C1 nseq=5
Length = 4273
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 92 atttccgggaaaattc 107
||||||||||||||||
Sbjct: 146 atttccgggaaaattc 161
>PTA.sd.8351.C1 nseq=5
Length = 1129
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 248 gaggaaggaaaatgat 263
||||||||||||||||
Sbjct: 861 gaggaaggaaaatgat 846
>PTA.sd.7946.C1 nseq=6
Length = 1768
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 247 ggaggaaggaaaatga 262
||||||||||||||||
Sbjct: 1238 ggaggaaggaaaatga 1223
>PTA.sd.7489.C1 nseq=2
Length = 2151
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 213 gtattcgacggaggaggaat 232
|||||||||||| |||||||
Sbjct: 721 gtattcgacggaagaggaat 740
>PTA.sd.6439.C1 nseq=2
Length = 794
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 46 cgccggcgagaagacg 61
||||||||||||||||
Sbjct: 303 cgccggcgagaagacg 288
>PTA.sd.6260.C1 nseq=10
Length = 2283
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 239 atgacgacggaggaag 254
||||||||||||||||
Sbjct: 151 atgacgacggaggaag 166
>PTA.sd.402.C1 nseq=9
Length = 3114
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 104 attctgagagagtgtg 119
||||||||||||||||
Sbjct: 265 attctgagagagtgtg 250
>PTA.sd.3061.C1 nseq=3
Length = 1255
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 160 tcagcggtgacggcgt 175
||||||||||||||||
Sbjct: 188 tcagcggtgacggcgt 203
>PTA.sd.1985.C1 nseq=13
Length = 2364
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 140 gtaaaacgacgccgtt 155
||||||||||||||||
Sbjct: 486 gtaaaacgacgccgtt 471
>PTA.sd.18036.C1 nseq=7
Length = 1507
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 140 gtaaaacgacgccgtt 155
||||||||||||||||
Sbjct: 330 gtaaaacgacgccgtt 315
>PTA.sd.17856.C1 nseq=7
Length = 852
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 229 gaatattccgatgacg 244
||||||||||||||||
Sbjct: 186 gaatattccgatgacg 171
>PTA.sd.16816.C1 nseq=10
Length = 1996
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 143 aaacgacgccgttgcc 158
||||||||||||||||
Sbjct: 282 aaacgacgccgttgcc 297
>PTA.sd.14035.C1 nseq=5
Length = 893
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 182 gttcgcttccggttaa 197
||||||||||||||||
Sbjct: 353 gttcgcttccggttaa 368
>PTA.sd.13722.C1 nseq=3
Length = 956
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 41 cgattcgccggcgaga 56
||||||||||||||||
Sbjct: 241 cgattcgccggcgaga 226
>PTA.sd.13487.C1 nseq=2
Length = 5237
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 241 gacgacggaggaagga 256
||||||||||||||||
Sbjct: 183 gacgacggaggaagga 168
>PTA.sd.11853.C1 nseq=3
Length = 1009
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 143 aaacgacgccgttgcc 158
||||||||||||||||
Sbjct: 18 aaacgacgccgttgcc 3
>PTA.sd.10135.C1 nseq=10
Length = 1279
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 247 ggaggaaggaaaatga 262
||||||||||||||||
Sbjct: 226 ggaggaaggaaaatga 211
>At5g56970.F
Length = 1572
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 215 attcgacggaggagga 230
||||||||||||||||
Sbjct: 169 attcgacggaggagga 154
>At2g37730.F
Length = 1599
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 111 gagagtgtggaacaag 126
||||||||||||||||
Sbjct: 676 gagagtgtggaacaag 691
>At1g09090.F PTA.sd.615.singlet
Length = 2517
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 aaaacgacgccgttg 156
|||||||||||||||
Sbjct: 269 aaaacgacgccgttg 283
>PTA.sd.9852.C1 nseq=20
Length = 1919
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 agcggtgacggcgtt 176
|||||||||||||||
Sbjct: 1673 agcggtgacggcgtt 1687
>PTA.sd.9477.C1 nseq=6
Length = 999
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 97 cgggaaaattctgag 111
|||||||||||||||
Sbjct: 40 cgggaaaattctgag 26
>PTA.sd.9362.C1 nseq=2
Length = 1577
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 tggatttccgggaaa 103
|||||||||||||||
Sbjct: 762 tggatttccgggaaa 776
>PTA.sd.9107.C1 nseq=18
Length = 2925
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 190 ccggttaacataccg 204
|||||||||||||||
Sbjct: 2639 ccggttaacataccg 2653
>PTA.sd.8975.C1 nseq=5
Length = 2375
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 20 ttttctctgacaatt 34
|||||||||||||||
Sbjct: 1089 ttttctctgacaatt 1075
>PTA.sd.8260.C1 nseq=5
Length = 1205
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 23 tctctgacaattact 37
|||||||||||||||
Sbjct: 1138 tctctgacaattact 1124
>PTA.sd.7961.C1 nseq=5
Length = 1905
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 93 tttccgggaaaattc 107
|||||||||||||||
Sbjct: 90 tttccgggaaaattc 104
>PTA.sd.7882.C1 nseq=9
Length = 1611
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 101 aaaattctgagagag 115
|||||||||||||||
Sbjct: 43 aaaattctgagagag 29
>PTA.sd.7864.C1 nseq=3
Length = 1086
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 161 cagcggtgacggcgt 175
|||||||||||||||
Sbjct: 297 cagcggtgacggcgt 283
>PTA.sd.7427.C1 nseq=17
Length = 1600
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 45 tcgccggcgagaaga 59
|||||||||||||||
Sbjct: 146 tcgccggcgagaaga 132
>PTA.sd.716.C1 nseq=9
Length = 707
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 221 cggaggaggaatatt 235
|||||||||||||||
Sbjct: 203 cggaggaggaatatt 189
>PTA.sd.6824.C1 nseq=15
Length = 2458
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 229 gaatattccgatgacgacg 247
|||| ||||||||||||||
Sbjct: 289 gaattttccgatgacgacg 307
>PTA.sd.6295.C1 nseq=12
Length = 1048
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 63 taacgagaaagagaa 77
|||||||||||||||
Sbjct: 54 taacgagaaagagaa 68
>PTA.sd.6037.C1 nseq=3
Length = 4500
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 116 tgtggaacaagtcat 130
|||||||||||||||
Sbjct: 2907 tgtggaacaagtcat 2921
>PTA.sd.5720.C1 nseq=33
Length = 2797
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 agttcgcttccggtt 195
|||||||||||||||
Sbjct: 2297 agttcgcttccggtt 2311
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 291
length of database: 39,126,732
effective HSP length: 16
effective length of query: 275
effective length of database: 38,700,540
effective search space: 10642648500
effective search space used: 10642648500
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)