BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_23628
(292 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05060.F 579 e-165
At2g41910.F 76 2e-13
At2g41920.F 50 9e-06
At2g34290.F 50 9e-06
At5g27790.F 42 0.002
At5g28220.F PTA.sd.15793.singlet 36 0.14
PTA.sd.1282.C1 nseq=12 36 0.14
PTA.sd.7166.C1 nseq=4 34 0.54
At5g62600.F PTA.sd.17664.singlet 32 2.1
PTA.sd.7494.C1 nseq=10 32 2.1
PTA.sd.1996.C1 nseq=5 32 2.1
PTA.sd.16629.C1 nseq=3 32 2.1
PTA.sd.1530.C1 nseq=18 32 2.1
PTA.sd.10887.C1 nseq=7 32 2.1
At5g48310.F 32 2.1
>At2g05060.F
Length = 948
Score = 579 bits (292), Expect = e-165
Identities = 292/292 (100%)
Strand = Plus / Plus
Query: 1 gagaccatggtgggataagaactatgacttgggagatcttaagaaaggttccatgccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gagaccatggtgggataagaactatgacttgggagatcttaagaaaggttccatgccatt 716
Query: 61 gatttcgaaagatattccttgtgatgcaaaactctttgtgatgacttgcttcgcgtcgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gatttcgaaagatattccttgtgatgcaaaactctttgtgatgacttgcttcgcgtcgga 776
Query: 121 gactaacaagagaaaaaacgctttcacattgttgaggcattgcttcttgcgtggggatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gactaacaagagaaaaaacgctttcacattgttgaggcattgcttcttgcgtggggatgt 836
Query: 181 taataagatcatagagcctctcgtgaagagtaagaattctaatgatatagcactagagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 taataagatcatagagcctctcgtgaagagtaagaattctaatgatatagcactagagtt 896
Query: 241 ggagaatattgaacacaggctttcgcaacttaggtgtattagtggtggatag 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 ggagaatattgaacacaggctttcgcaacttaggtgtattagtggtggatag 948
>At2g41910.F
Length = 1122
Score = 75.8 bits (38), Expect = 2e-13
Identities = 164/206 (79%)
Strand = Plus / Plus
Query: 4 accatggtgggataagaactatgacttgggagatcttaagaaaggttccatgccattgat 63
|||||||||| |||| |||||||||||| ||||| ||||| | | | |||| ||||
Sbjct: 663 accatggtggcataataactatgacttgaaggatctcaagaactggtacgcgccaatgat 722
Query: 64 ttcgaaagatattccttgtgatgcaaaactctttgtgatgacttgcttcgcgtcggagac 123
| ||| ||| ||||||| |||||||||| |||| | ||| ||||||| |||| | ||
Sbjct: 723 tccgagtgatcttccttgcgatgcaaaacactttattatggcttgctttgcgttaaatac 782
Query: 124 taacaagagaaaaaacgctttcacattgttgaggcattgcttcttgcgtggggatgttaa 183
||| |||||| | |||| || ||||||||| |||| ||||||||||||||| |||||
Sbjct: 783 aaacgagagaagagacgcattgacattgttggagcatagcttcttgcgtggggtggttaa 842
Query: 184 taagatcatagagcctctcgtgaaga 209
|||||||| | |||||| |||||||
Sbjct: 843 taagatcacaaagcctcatgtgaaga 868
>At2g41920.F
Length = 957
Score = 50.1 bits (25), Expect = 9e-06
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 75 ttccttgtgatgcaaaactctttgtgatgacttgcttcgcgtcggagactaacaagagaa 134
||||||| ||||||||||||||| | ||||| ||||| ||||| || | | |||| |
Sbjct: 740 ttccttgcgatgcaaaactctttctcatgacctgctttgcgtccgaaccagatgagagga 799
Query: 135 aaaacgctttcacattgttgaggcattgcttcttgcgtggggatgttaataag 187
|| | || || |||||||||||||| ||||||||| ||| ||||| ||||||
Sbjct: 800 aagatgcgttgacattgttgaggcaaagcttcttgcatggagatgtcaataag 852
>At2g34290.F
Length = 798
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 75 ttccttgtgatgcaaaactctttgtgatgacttgctt 111
||||||||||||||||||||||| | ||||| |||||
Sbjct: 698 ttccttgtgatgcaaaactctttctcatgacctgctt 734
Score = 30.2 bits (15), Expect = 8.5
Identities = 24/27 (88%)
Strand = Plus / Plus
Query: 1 gagaccatggtgggataagaactatga 27
||||||||||||| ||| ||||||||
Sbjct: 624 gagaccatggtggcatactaactatga 650
>At5g27790.F
Length = 984
Score = 42.1 bits (21), Expect = 0.002
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 75 ttccttgtgatgcaaaactctttgtgatgacttgctt 111
||||||| ||||||||||||||| | ||||| |||||
Sbjct: 776 ttccttgcgatgcaaaactctttctcatgacctgctt 812
Score = 30.2 bits (15), Expect = 8.5
Identities = 24/27 (88%)
Strand = Plus / Plus
Query: 1 gagaccatggtgggataagaactatga 27
||||||||||||| ||| ||||||||
Sbjct: 702 gagaccatggtggcatactaactatga 728
>At5g28220.F PTA.sd.15793.singlet
Length = 882
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 152 ttgaggcattgcttcttg 169
||||||||||||||||||
Sbjct: 278 ttgaggcattgcttcttg 295
>PTA.sd.1282.C1 nseq=12
Length = 2498
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 82 tgatgcaaaactctttgt 99
||||||||||||||||||
Sbjct: 1194 tgatgcaaaactctttgt 1211
>PTA.sd.7166.C1 nseq=4
Length = 1256
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 186 agatcatagagcctctc 202
|||||||||||||||||
Sbjct: 431 agatcatagagcctctc 415
>At5g62600.F PTA.sd.17664.singlet
Length = 1719
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 211 taagaattctaatgat 226
||||||||||||||||
Sbjct: 1582 taagaattctaatgat 1567
>PTA.sd.7494.C1 nseq=10
Length = 1439
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 82 tgatgcaaaactcttt 97
||||||||||||||||
Sbjct: 1051 tgatgcaaaactcttt 1036
>PTA.sd.1996.C1 nseq=5
Length = 600
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 236 gagttggagaatattg 251
||||||||||||||||
Sbjct: 279 gagttggagaatattg 294
>PTA.sd.16629.C1 nseq=3
Length = 3236
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 82 tgatgcaaaactcttt 97
||||||||||||||||
Sbjct: 528 tgatgcaaaactcttt 513
>PTA.sd.1530.C1 nseq=18
Length = 6831
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 35 gatcttaagaaaggtt 50
||||||||||||||||
Sbjct: 2074 gatcttaagaaaggtt 2089
>PTA.sd.10887.C1 nseq=7
Length = 1476
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 83 gatgcaaaactctttg 98
||||||||||||||||
Sbjct: 260 gatgcaaaactctttg 245
>At5g48310.F
Length = 3471
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 139 cgctttcacattgttg 154
||||||||||||||||
Sbjct: 1026 cgctttcacattgttg 1011
>At5g21000.F
Length = 456
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 232 actagagttggagaat 247
||||||||||||||||
Sbjct: 363 actagagttggagaat 378
>At3g29635.F
Length = 1377
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 25 tgacttgggagatctt 40
||||||||||||||||
Sbjct: 34 tgacttgggagatctt 19
>At3g14950.F
Length = 2166
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 33 gagatcttaagaaagg 48
||||||||||||||||
Sbjct: 1762 gagatcttaagaaagg 1777
>At1g77050.F
Length = 1542
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 237 agttggagaatattga 252
||||||||||||||||
Sbjct: 875 agttggagaatattga 890
>At1g31740.F
Length = 2274
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 76 tccttgtgatgcaaaa 91
||||||||||||||||
Sbjct: 483 tccttgtgatgcaaaa 468
>At3g10890.F PTA.sd.8208.singlet
Length = 1245
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 atgccattgatttcg 67
|||||||||||||||
Sbjct: 818 atgccattgatttcg 832
>PTA.sd.8618.C1 nseq=6
Length = 2471
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 147 cattgttgaggcatt 161
|||||||||||||||
Sbjct: 828 cattgttgaggcatt 814
>PTA.sd.8382.C1 nseq=2
Length = 3871
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 46 aggttccatgccatt 60
|||||||||||||||
Sbjct: 2671 aggttccatgccatt 2685
>PTA.sd.8243.C1 nseq=19
Length = 1950
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 12 gggataagaactatg 26
|||||||||||||||
Sbjct: 1498 gggataagaactatg 1512
>PTA.sd.6996.C1 nseq=2
Length = 1243
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 gtgaagagtaagaat 217
|||||||||||||||
Sbjct: 1027 gtgaagagtaagaat 1041
>PTA.sd.6627.C1 nseq=7
Length = 1197
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 169 gcgtggggatgttaa 183
|||||||||||||||
Sbjct: 813 gcgtggggatgttaa 827
>PTA.sd.3634.C1 nseq=3
Length = 4500
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 236 gagttggagaatatt 250
|||||||||||||||
Sbjct: 3402 gagttggagaatatt 3388
>PTA.sd.347.C1 nseq=4
Length = 2370
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 239 ttggagaatattgaa 253
|||||||||||||||
Sbjct: 1980 ttggagaatattgaa 1994
>PTA.sd.2786.C1 nseq=17
Length = 1680
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 agactaacaagagaa 134
|||||||||||||||
Sbjct: 1291 agactaacaagagaa 1305
>PTA.sd.2785.C1 nseq=15
Length = 2199
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 agactaacaagagaa 134
|||||||||||||||
Sbjct: 1879 agactaacaagagaa 1893
>PTA.sd.17674.C1 nseq=7
Length = 2225
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 150 tgttgaggcattgct 164
|||||||||||||||
Sbjct: 1794 tgttgaggcattgct 1808
>PTA.sd.16935.C1 nseq=18
Length = 3255
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 72 atattccttgtgatg 86
|||||||||||||||
Sbjct: 1358 atattccttgtgatg 1372
>PTA.sd.1676.C1 nseq=6
Length = 1607
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 59 ttgatttcgaaagat 73
|||||||||||||||
Sbjct: 1589 ttgatttcgaaagat 1575
>PTA.sd.15883.C1 nseq=17
Length = 880
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 98 gtgatgacttgcttc 112
|||||||||||||||
Sbjct: 8 gtgatgacttgcttc 22
>PTA.sd.15882.C1 nseq=16
Length = 3630
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 98 gtgatgacttgcttc 112
|||||||||||||||
Sbjct: 2907 gtgatgacttgcttc 2921
>PTA.sd.15745.C1 nseq=8
Length = 2023
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 93 tctttgtgatgactt 107
|||||||||||||||
Sbjct: 515 tctttgtgatgactt 529
>PTA.sd.14868.C1 nseq=9
Length = 1496
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 55 gccattgatttcgaa 69
|||||||||||||||
Sbjct: 572 gccattgatttcgaa 558
>PTA.sd.14310.C1 nseq=2
Length = 3426
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 155 aggcattgcttcttg 169
|||||||||||||||
Sbjct: 2698 aggcattgcttcttg 2712
>PTA.sd.1425.C1 nseq=6
Length = 3855
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 84 atgcaaaactctttg 98
|||||||||||||||
Sbjct: 1539 atgcaaaactctttg 1525
>PTA.sd.14173.C1 nseq=6
Length = 2032
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 152 ttgaggcattgcttc 166
|||||||||||||||
Sbjct: 411 ttgaggcattgcttc 397
>PTA.sd.13559.C1 nseq=7
Length = 2043
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 178 tgttaataagatcat 192
|||||||||||||||
Sbjct: 1763 tgttaataagatcat 1749
>PTA.sd.12231.C1 nseq=5
Length = 5150
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 239 ttggagaatattgaa 253
|||||||||||||||
Sbjct: 1804 ttggagaatattgaa 1790
>PTA.sd.11869.C1 nseq=7
Length = 730
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 14 gataagaactatgac 28
|||||||||||||||
Sbjct: 164 gataagaactatgac 178
>PTA.sd.1173.C1 nseq=6
Length = 1982
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 182 aataagatcatagag 196
|||||||||||||||
Sbjct: 882 aataagatcatagag 868
>PTA.sd.11408.C1 nseq=7
Length = 2668
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 67 gaaagatattccttg 81
|||||||||||||||
Sbjct: 2339 gaaagatattccttg 2325
>PTA.sd.11129.C1 nseq=2
Length = 3105
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 aaggttccatgccat 59
|||||||||||||||
Sbjct: 2174 aaggttccatgccat 2188
>PTA.sd.1042.C1 nseq=2
Length = 2550
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 206 aagagtaagaattct 220
|||||||||||||||
Sbjct: 2491 aagagtaagaattct 2505
>At5g60350.F
Length = 879
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 tcttgcgtggggatg 179
|||||||||||||||
Sbjct: 263 tcttgcgtggggatg 277
>At5g42880.F
Length = 2256
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 155 aggcattgcttcttg 169
|||||||||||||||
Sbjct: 546 aggcattgcttcttg 532
>At4g11730.F
Length = 2442
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 74 attccttgtgatgca 88
|||||||||||||||
Sbjct: 487 attccttgtgatgca 501
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 292
length of database: 39,126,732
effective HSP length: 16
effective length of query: 276
effective length of database: 38,700,540
effective search space: 10681349040
effective search space used: 10681349040
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)