BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_23604
(292 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g22010.F 579 e-165
PTA.sd.16364.C1 nseq=95 34 0.54
PTA.sd.9271.C1 nseq=12 32 2.1
PTA.sd.7113.C1 nseq=6 32 2.1
PTA.sd.5920.C1 nseq=6 32 2.1
PTA.sd.14350.C1 nseq=4 32 2.1
At5g29040.F 32 2.1
At5g07660.F PTA.sd.14371.singlet 30 8.5
At5g01290.F PTA.sd.13888.singlet 30 8.5
PTA.sd.9707.C1 nseq=24 30 8.5
PTA.sd.9040.C1 nseq=7 30 8.5
PTA.sd.8392.C2 nseq=6 30 8.5
PTA.sd.776.C1 nseq=2 30 8.5
PTA.sd.7176.C1 nseq=3 30 8.5
PTA.sd.4254.C1 nseq=27 30 8.5
>At1g22010.F
Length = 492
Score = 579 bits (292), Expect = e-165
Identities = 292/292 (100%)
Strand = Plus / Plus
Query: 1 gaattgcttagaggacgatgaacgtatcgatgtctctcaggttgatttagcgaggaggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gaattgcttagaggacgatgaacgtatcgatgtctctcaggttgatttagcgaggaggga 251
Query: 61 actcagtagacttgtcacccacctcatgttatacttgcataactatcaagattgtgctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 actcagtagacttgtcacccacctcatgttatacttgcataactatcaagattgtgctct 311
Query: 121 gtcaatttatattacctttaagttcattagtcgtactcgtgttaggattcttgaacagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtcaatttatattacctttaagttcattagtcgtactcgtgttaggattcttgaacagtg 371
Query: 181 tgtactatcggaaatgacgacgacgtcgaggatattcgaagacgaaaaggatatgtggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgtactatcggaaatgacgacgacgtcgaggatattcgaagacgaaaaggatatgtggct 431
Query: 241 cccagtcgatgagagcgtaatgggcatcgaagagcctaactggaacatcttt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cccagtcgatgagagcgtaatgggcatcgaagagcctaactggaacatcttt 483
>PTA.sd.16364.C1 nseq=95
Length = 1732
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 19 tgaacgtatcgatgtct 35
|||||||||||||||||
Sbjct: 239 tgaacgtatcgatgtct 255
>PTA.sd.9271.C1 nseq=12
Length = 1580
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 126 tttatattacctttaa 141
||||||||||||||||
Sbjct: 1550 tttatattacctttaa 1565
>PTA.sd.7113.C1 nseq=6
Length = 1530
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 218 gaagacgaaaaggata 233
||||||||||||||||
Sbjct: 185 gaagacgaaaaggata 200
>PTA.sd.5920.C1 nseq=6
Length = 2008
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 162 ttaggattcttgaaca 177
||||||||||||||||
Sbjct: 1120 ttaggattcttgaaca 1135
>PTA.sd.14350.C1 nseq=4
Length = 3079
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 46 tttagcgaggagggaa 61
||||||||||||||||
Sbjct: 764 tttagcgaggagggaa 779
>At5g29040.F
Length = 1992
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 195 tgacgacgacgtcgaggata 214
|||||||||||| |||||||
Sbjct: 1860 tgacgacgacgtggaggata 1879
>At5g07660.F PTA.sd.14371.singlet
Length = 3177
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 136 ctttaagttcattag 150
|||||||||||||||
Sbjct: 2266 ctttaagttcattag 2252
>At5g01290.F PTA.sd.13888.singlet
Length = 1824
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 gaactcagtagactt 73
|||||||||||||||
Sbjct: 1455 gaactcagtagactt 1469
>PTA.sd.9707.C1 nseq=24
Length = 1804
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 42 ttgatttagcgagga 56
|||||||||||||||
Sbjct: 1267 ttgatttagcgagga 1253
>PTA.sd.9040.C1 nseq=7
Length = 974
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 gatgtctctcaggtt 43
|||||||||||||||
Sbjct: 700 gatgtctctcaggtt 714
>PTA.sd.8392.C2 nseq=6
Length = 2180
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 93 acttgcataactatc 107
|||||||||||||||
Sbjct: 954 acttgcataactatc 940
>PTA.sd.776.C1 nseq=2
Length = 3927
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 tgtgctctgtcaatt 127
|||||||||||||||
Sbjct: 3497 tgtgctctgtcaatt 3483
>PTA.sd.7176.C1 nseq=3
Length = 2759
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 tgttaggattcttga 174
|||||||||||||||
Sbjct: 577 tgttaggattcttga 563
>PTA.sd.4254.C1 nseq=27
Length = 1767
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 136 ctttaagttcattag 150
|||||||||||||||
Sbjct: 473 ctttaagttcattag 459
>PTA.sd.1961.C1 nseq=2
Length = 921
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 cgaggatattcgaag 221
|||||||||||||||
Sbjct: 150 cgaggatattcgaag 164
>PTA.sd.17958.C1 nseq=18
Length = 1608
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 104 tatcaagattgtgct 118
|||||||||||||||
Sbjct: 887 tatcaagattgtgct 873
>PTA.sd.15766.C1 nseq=3
Length = 1450
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 tcggaaatgacgacg 202
|||||||||||||||
Sbjct: 112 tcggaaatgacgacg 98
>PTA.sd.15558.C1 nseq=4
Length = 1760
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 54 ggagggaactcagta 68
|||||||||||||||
Sbjct: 1480 ggagggaactcagta 1494
>PTA.sd.15458.C1 nseq=9
Length = 14284
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 cctttaagttcatta 149
|||||||||||||||
Sbjct: 10358 cctttaagttcatta 10344
>PTA.sd.15289.C1 nseq=9
Length = 2549
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 gacgacgacgtcgag 210
|||||||||||||||
Sbjct: 108 gacgacgacgtcgag 122
>PTA.sd.1271.C1 nseq=35
Length = 1930
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 117 ctctgtcaatttatattac 135
|||| ||||||||||||||
Sbjct: 1820 ctctctcaatttatattac 1802
>PTA.sd.12055.C1 nseq=5
Length = 1799
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 162 ttaggattcttgaacagtg 180
||||||||||||| |||||
Sbjct: 1119 ttaggattcttgaccagtg 1137
>PTA.sd.10455.C1 nseq=8
Length = 1068
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 129 atattacctttaagt 143
|||||||||||||||
Sbjct: 741 atattacctttaagt 727
>At5g58880.F
Length = 3267
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 ctcagtagacttgtc 76
|||||||||||||||
Sbjct: 2280 ctcagtagacttgtc 2266
>At1g60270.F
Length = 1434
Score = 30.2 bits (15), Expect = 8.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 110 gattgtgctctgtcaattt 128
|||||| ||||||||||||
Sbjct: 1283 gattgtactctgtcaattt 1301
>At1g28500.F
Length = 981
Score = 30.2 bits (15), Expect = 8.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 cgaggatattcgaag 221
|||||||||||||||
Sbjct: 99 cgaggatattcgaag 113
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 292
length of database: 39,126,732
effective HSP length: 16
effective length of query: 276
effective length of database: 38,700,540
effective search space: 10681349040
effective search space used: 10681349040
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)