BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_21278
(210 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.15879.C1 nseq=6 416 e-116
PTA.sd.5655.C1 nseq=12 34 0.38
At1g29870.F 32 1.5
At2g47500.F PTA.sd.7388.singlet 30 6.0
PTA.sd.7517.C1 nseq=4 30 6.0
PTA.sd.7317.C1 nseq=20 30 6.0
PTA.sd.5647.C1 nseq=27 30 6.0
PTA.sd.4749.C1 nseq=5 30 6.0
PTA.sd.337.C1 nseq=16 30 6.0
PTA.sd.2470.C1 nseq=3 30 6.0
PTA.sd.16660.C1 nseq=4 30 6.0
PTA.sd.1511.C1 nseq=3 30 6.0
PTA.sd.13487.C1 nseq=2 30 6.0
PTA.sd.13303.C1 nseq=10 30 6.0
PTA.sd.12394.C1 nseq=3 30 6.0
>PTA.sd.15879.C1 nseq=6
Length = 3604
Score = 416 bits (210), Expect = e-116
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 1 gttggtgactgtatgctcaagctcgggaagagttcatgtccttcgtgtgagaccctccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3183 gttggtgactgtatgctcaagctcgggaagagttcatgtccttcgtgtgagaccctccat 3242
Query: 61 tctcagcagagattcacatgactcaaaagtaggagaaatcacgaggatggagttgcaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3243 tctcagcagagattcacatgactcaaaagtaggagaaatcacgaggatggagttgcaggc 3302
Query: 121 agacattttctcttcaccagtgatgatcggtggccggatatttgttggctgtcgtgacga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3303 agacattttctcttcaccagtgatgatcggtggccggatatttgttggctgtcgtgacga 3362
Query: 181 ctatgtgcactgcctctctcttgagagttg 210
||||||||||||||||||||||||||||||
Sbjct: 3363 ctatgtgcactgcctctctcttgagagttg 3392
>PTA.sd.5655.C1 nseq=12
Length = 2107
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 116 caggcagacattttctc 132
|||||||||||||||||
Sbjct: 468 caggcagacattttctc 452
>At1g29870.F
Length = 1395
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 58 cattctcagcagagat 73
||||||||||||||||
Sbjct: 526 cattctcagcagagat 511
>At2g47500.F PTA.sd.7388.singlet
Length = 2586
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 ctcagcagagattca 76
|||||||||||||||
Sbjct: 764 ctcagcagagattca 750
>PTA.sd.7517.C1 nseq=4
Length = 970
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 aggagaaatcacgag 105
|||||||||||||||
Sbjct: 209 aggagaaatcacgag 195
>PTA.sd.7317.C1 nseq=20
Length = 1314
Score = 30.2 bits (15), Expect = 6.0
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 83 tcaaaagtaggagaaatca 101
||||||| |||||||||||
Sbjct: 1277 tcaaaagcaggagaaatca 1295
>PTA.sd.5647.C1 nseq=27
Length = 1700
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 tcaaaagtaggagaa 97
|||||||||||||||
Sbjct: 103 tcaaaagtaggagaa 89
>PTA.sd.4749.C1 nseq=5
Length = 2611
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 ttctcttcaccagtg 142
|||||||||||||||
Sbjct: 1205 ttctcttcaccagtg 1191
>PTA.sd.337.C1 nseq=16
Length = 2910
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 23 tcgggaagagttcat 37
|||||||||||||||
Sbjct: 2103 tcgggaagagttcat 2117
>PTA.sd.2470.C1 nseq=3
Length = 1583
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 122 gacattttctcttca 136
|||||||||||||||
Sbjct: 1560 gacattttctcttca 1546
>PTA.sd.16660.C1 nseq=4
Length = 2474
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 tcaaaagtaggagaa 97
|||||||||||||||
Sbjct: 2455 tcaaaagtaggagaa 2441
>PTA.sd.1511.C1 nseq=3
Length = 3245
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 86 aaagtaggagaaatc 100
|||||||||||||||
Sbjct: 1559 aaagtaggagaaatc 1545
>PTA.sd.13487.C1 nseq=2
Length = 5237
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 118 ggcagacattttctc 132
|||||||||||||||
Sbjct: 4599 ggcagacattttctc 4613
>PTA.sd.13303.C1 nseq=10
Length = 3230
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 ttgttggctgtcgtg 176
|||||||||||||||
Sbjct: 1821 ttgttggctgtcgtg 1835
>PTA.sd.12394.C1 nseq=3
Length = 1334
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 124 cattttctcttcacc 138
|||||||||||||||
Sbjct: 1260 cattttctcttcacc 1274
>PTA.sd.10553.C1 nseq=2
Length = 1837
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 attttctcttcacca 139
|||||||||||||||
Sbjct: 770 attttctcttcacca 784
>PTA.sd.10464.C1 nseq=8
Length = 1132
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 86 aaagtaggagaaatc 100
|||||||||||||||
Sbjct: 120 aaagtaggagaaatc 106
>ndhH.F
Length = 1182
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 tcaaaagtaggagaa 97
|||||||||||||||
Sbjct: 959 tcaaaagtaggagaa 945
>At5g62370.F
Length = 2949
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 cactgcctctctctt 202
|||||||||||||||
Sbjct: 592 cactgcctctctctt 578
>At5g28950.F
Length = 447
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 77 catgactcaaaagta 91
|||||||||||||||
Sbjct: 235 catgactcaaaagta 249
>At3g31920.F
Length = 2178
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 ttctcttcaccagtg 142
|||||||||||||||
Sbjct: 749 ttctcttcaccagtg 735
>At2g15070.F
Length = 2019
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 ttctcttcaccagtg 142
|||||||||||||||
Sbjct: 524 ttctcttcaccagtg 510
>At1g67040.F
Length = 2481
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 64 cagcagagattcaca 78
|||||||||||||||
Sbjct: 2056 cagcagagattcaca 2070
>At1g33580.F
Length = 1287
Score = 30.2 bits (15), Expect = 6.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 ttctcttcaccagtg 142
|||||||||||||||
Sbjct: 770 ttctcttcaccagtg 756
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 210
length of database: 39,126,732
effective HSP length: 16
effective length of query: 194
effective length of database: 38,700,540
effective search space: 7507904760
effective search space used: 7507904760
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)