BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_19032
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.11874.C1 nseq=3 589 e-168
PTA.sd.3869.C1 nseq=7 36 0.14
PTA.sd.3460.C1 nseq=6 36 0.14
At5g24310.F PTA.sd.15553.singlet 34 0.55
PTA.sd.1502.C1 nseq=5 34 0.55
PTA.sd.12588.C1 nseq=9 34 0.55
At5g65820.F 34 0.55
At5g28800.F 34 0.55
At1g76220.F 34 0.55
PTA.sd.8956.C1 nseq=2 32 2.2
PTA.sd.891.C1 nseq=3 32 2.2
PTA.sd.7193.C1 nseq=6 32 2.2
PTA.sd.5765.C1 nseq=9 32 2.2
PTA.sd.3651.C1 nseq=5 32 2.2
PTA.sd.3416.C1 nseq=3 32 2.2
>PTA.sd.11874.C1 nseq=3
Length = 3311
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 taagttctgcttcccgggatagtctagtccacgatggttaccccaaaatgctagagactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2825 taagttctgcttcccgggatagtctagtccacgatggttaccccaaaatgctagagactg 2884
Query: 61 cgttcaaaacttcaaccatggcgagatcatcagatatggagaagcacatggactgcaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2885 cgttcaaaacttcaaccatggcgagatcatcagatatggagaagcacatggactgcaaaa 2944
Query: 121 cttcctatagtcgatttgatggagaagatgaggaagatagtttaattgagtctcctcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2945 cttcctatagtcgatttgatggagaagatgaggaagatagtttaattgagtctcctcctc 3004
Query: 181 aacgaaacagcgacatggctttcttagatcacatcatccgctctccggtagacactggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3005 aacgaaacagcgacatggctttcttagatcacatcatccgctctccggtagacactggtg 3064
Query: 241 caacggaaaacagagatgtctatggttcaggggatgacgattctccggaaacgcaat 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3065 caacggaaaacagagatgtctatggttcaggggatgacgattctccggaaacgcaat 3121
>PTA.sd.3869.C1 nseq=7
Length = 1883
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 134 atttgatggagaagatga 151
||||||||||||||||||
Sbjct: 331 atttgatggagaagatga 348
>PTA.sd.3460.C1 nseq=6
Length = 1920
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 135 tttgatggagaagatgag 152
||||||||||||||||||
Sbjct: 1210 tttgatggagaagatgag 1227
>At5g24310.F PTA.sd.15553.singlet
Length = 1002
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 135 tttgatggagaagatga 151
|||||||||||||||||
Sbjct: 487 tttgatggagaagatga 503
>PTA.sd.1502.C1 nseq=5
Length = 643
Score = 34.2 bits (17), Expect = 0.55
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 132 cgatttgatggagaagatgaggaag 156
|||||||||||||||| |||||||
Sbjct: 119 cgatttgatggagaagtggaggaag 143
>PTA.sd.12588.C1 nseq=9
Length = 3595
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 141 ggagaagatgaggaaga 157
|||||||||||||||||
Sbjct: 3221 ggagaagatgaggaaga 3205
>At5g65820.F
Length = 1914
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 137 tgatggagaagatgagg 153
|||||||||||||||||
Sbjct: 1241 tgatggagaagatgagg 1257
>At5g28800.F
Length = 357
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 141 ggagaagatgaggaaga 157
|||||||||||||||||
Sbjct: 6 ggagaagatgaggaaga 22
>At1g76220.F
Length = 771
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 141 ggagaagatgaggaaga 157
|||||||||||||||||
Sbjct: 453 ggagaagatgaggaaga 469
>PTA.sd.8956.C1 nseq=2
Length = 1136
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 187 acagcgacatggcttt 202
||||||||||||||||
Sbjct: 873 acagcgacatggcttt 858
>PTA.sd.891.C1 nseq=3
Length = 884
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 201 ttcttagatcacatca 216
||||||||||||||||
Sbjct: 363 ttcttagatcacatca 378
>PTA.sd.7193.C1 nseq=6
Length = 913
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 143 agaagatgaggaagat 158
||||||||||||||||
Sbjct: 73 agaagatgaggaagat 88
>PTA.sd.5765.C1 nseq=9
Length = 1353
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 133 gatttgatggagaaga 148
||||||||||||||||
Sbjct: 103 gatttgatggagaaga 118
>PTA.sd.3651.C1 nseq=5
Length = 15577
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 138 gatggagaagatgaggaaga 157
|||| |||||||||||||||
Sbjct: 13171 gatgaagaagatgaggaaga 13190
>PTA.sd.3416.C1 nseq=3
Length = 2175
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 192 gacatggctttcttagatca 211
||||||||||| ||||||||
Sbjct: 1936 gacatggctttattagatca 1917
>PTA.sd.17575.C1 nseq=15
Length = 2648
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 254 agatgtctatggttca 269
||||||||||||||||
Sbjct: 1970 agatgtctatggttca 1985
>PTA.sd.17022.C1 nseq=21
Length = 1588
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 140 tggagaagatgaggaagata 159
|||||||||||| |||||||
Sbjct: 49 tggagaagatgaagaagata 30
>PTA.sd.13057.C1 nseq=5
Length = 1473
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 77 catggcgagatcatca 92
||||||||||||||||
Sbjct: 646 catggcgagatcatca 631
>PTA.sd.12440.C1 nseq=5
Length = 1299
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 142 gagaagatgaggaaga 157
||||||||||||||||
Sbjct: 268 gagaagatgaggaaga 253
>PTA.sd.12340.C1 nseq=3
Length = 1248
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 142 gagaagatgaggaaga 157
||||||||||||||||
Sbjct: 482 gagaagatgaggaaga 497
>At5g55520.F
Length = 2409
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 137 tgatggagaagatgag 152
||||||||||||||||
Sbjct: 1359 tgatggagaagatgag 1374
>At3g50580.F
Length = 798
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 133 gatttgatggagaagatgag 152
||||||||||||| ||||||
Sbjct: 511 gatttgatggagatgatgag 492
>At3g11860.F
Length = 759
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 133 gatttgatggagaaga 148
||||||||||||||||
Sbjct: 140 gatttgatggagaaga 155
>At2g27750.F
Length = 546
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 143 agaagatgaggaagat 158
||||||||||||||||
Sbjct: 491 agaagatgaggaagat 506
>At1g71000.F
Length = 441
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 140 tggagaagatgaggaa 155
||||||||||||||||
Sbjct: 240 tggagaagatgaggaa 255
>At1g02580.F
Length = 2070
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 143 agaagatgaggaagat 158
||||||||||||||||
Sbjct: 519 agaagatgaggaagat 534
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 143 agaagatgaggaaga 157
|||||||||||||||
Sbjct: 540 agaagatgaggaaga 554
>At3g09470.F PTA.sd.8099.singlet
Length = 858
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 ttgatggagaagatg 150
|||||||||||||||
Sbjct: 599 ttgatggagaagatg 613
>PTA.sd.9565.C1 nseq=2
Length = 2293
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 61 cgttcaaaacttcaa 75
|||||||||||||||
Sbjct: 1240 cgttcaaaacttcaa 1226
>PTA.sd.9330.C1 nseq=12
Length = 2088
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 175 ctcctcaacgaaaca 189
|||||||||||||||
Sbjct: 74 ctcctcaacgaaaca 60
>PTA.sd.9209.C1 nseq=77
Length = 2011
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 136 ttgatggagaagatgagga 154
||||||| |||||||||||
Sbjct: 360 ttgatggcgaagatgagga 342
>PTA.sd.8752.C1 nseq=8
Length = 3858
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 143 agaagatgaggaaga 157
|||||||||||||||
Sbjct: 2446 agaagatgaggaaga 2460
>PTA.sd.8217.C1 nseq=6
Length = 3099
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 61 cgttcaaaacttcaa 75
|||||||||||||||
Sbjct: 1978 cgttcaaaacttcaa 1964
>PTA.sd.814.C1 nseq=12
Length = 1556
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 138 gatggagaagatgag 152
|||||||||||||||
Sbjct: 1162 gatggagaagatgag 1176
>PTA.sd.7086.C1 nseq=4
Length = 2861
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 174 cctcctcaacgaaacagcg 192
|||| ||||||||||||||
Sbjct: 2247 cctcatcaacgaaacagcg 2265
>PTA.sd.6952.C1 nseq=9
Length = 1241
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 144 gaagatgaggaagat 158
|||||||||||||||
Sbjct: 652 gaagatgaggaagat 666
>PTA.sd.6231.C1 nseq=5
Length = 1384
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 139 atggagaagatgagg 153
|||||||||||||||
Sbjct: 803 atggagaagatgagg 789
>PTA.sd.5969.C1 nseq=5
Length = 2226
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 254 agatgtctatggttc 268
|||||||||||||||
Sbjct: 716 agatgtctatggttc 730
>PTA.sd.576.C1 nseq=20
Length = 1471
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 gagaagatgaggaag 156
|||||||||||||||
Sbjct: 1159 gagaagatgaggaag 1173
>PTA.sd.5717.C1 nseq=96
Length = 1495
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 tgatggagaagatga 151
|||||||||||||||
Sbjct: 392 tgatggagaagatga 406
>PTA.sd.5378.C1 nseq=12
Length = 2157
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 146 agatgaggaagatag 160
|||||||||||||||
Sbjct: 298 agatgaggaagatag 284
>PTA.sd.4374.C1 nseq=3
Length = 3614
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 88 catcagatatggaga 102
|||||||||||||||
Sbjct: 1762 catcagatatggaga 1776
>PTA.sd.4092.C1 nseq=31
Length = 2108
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 gaagatgaggaagat 158
|||||||||||||||
Sbjct: 254 gaagatgaggaagat 240
>PTA.sd.3893.C1 nseq=2
Length = 2417
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 133 gatttgatggagaag 147
|||||||||||||||
Sbjct: 1129 gatttgatggagaag 1115
>PTA.sd.3887.C1 nseq=20
Length = 11197
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 144 gaagatgaggaagat 158
|||||||||||||||
Sbjct: 6526 gaagatgaggaagat 6540
>PTA.sd.1999.C1 nseq=6
Length = 5481
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 143 agaagatgaggaaga 157
|||||||||||||||
Sbjct: 4843 agaagatgaggaaga 4857
>PTA.sd.17985.C1 nseq=7
Length = 1084
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 144 gaagatgaggaagat 158
|||||||||||||||
Sbjct: 749 gaagatgaggaagat 763
>PTA.sd.17749.C1 nseq=10
Length = 1847
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 143 agaagatgaggaaga 157
|||||||||||||||
Sbjct: 1204 agaagatgaggaaga 1218
>PTA.sd.1739.C1 nseq=8
Length = 2110
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 143 agaagatgaggaagatagt 161
|||| ||||||||||||||
Sbjct: 2056 agaatatgaggaagatagt 2038
>PTA.sd.1711.C1 nseq=3
Length = 4848
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 catcatccgctctcc 226
|||||||||||||||
Sbjct: 1920 catcatccgctctcc 1906
>PTA.sd.163.C1 nseq=11
Length = 1422
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 gacatggctttctta 206
|||||||||||||||
Sbjct: 450 gacatggctttctta 464
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)