BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_07954
(170 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.1716.C1 nseq=125 337 2e-92
PTA.sd.3919.C1 nseq=13 163 5e-40
PTA.sd.15074.C2 nseq=4 36 0.077
At4g37060.F 34 0.30
PTA.sd.7274.C1 nseq=6 32 1.2
PTA.sd.7122.C1 nseq=6 32 1.2
PTA.sd.3572.C1 nseq=5 32 1.2
PTA.sd.16935.C1 nseq=18 32 1.2
PTA.sd.14301.C1 nseq=4 32 1.2
PTA.sd.14228.C1 nseq=11 32 1.2
PTA.sd.11647.C1 nseq=2 32 1.2
At2g07728.F 32 1.2
PTA.sd.9818.C1 nseq=5 30 4.7
PTA.sd.9151.C1 nseq=29 30 4.7
PTA.sd.7612.C1 nseq=6 30 4.7
>PTA.sd.1716.C1 nseq=125
Length = 2055
Score = 337 bits (170), Expect = 2e-92
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 1 taagggcaatggtgatcattaaccctgggaacccaactggccagtgtctaagcgaagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 taagggcaatggtgatcattaaccctgggaacccaactggccagtgtctaagcgaagcta 994
Query: 61 acataagagagatattgaagttctgttataacgagaaactggttcttctgggagacgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 acataagagagatattgaagttctgttataacgagaaactggttcttctgggagacgagg 1054
Query: 121 tttatcagcagaacatataccaggatgagcgtccctttatcagctccaag 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 tttatcagcagaacatataccaggatgagcgtccctttatcagctccaag 1104
>PTA.sd.3919.C1 nseq=13
Length = 1796
Score = 163 bits (82), Expect = 5e-40
Identities = 148/170 (87%)
Strand = Plus / Plus
Query: 1 taagggcaatggtgatcattaaccctgggaacccaactggccagtgtctaagcgaagcta 60
|||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||
Sbjct: 758 taagggcaatggtgattattaaccccggaaacccaactggccagtgtcttagcgaagcta 817
Query: 61 acataagagagatattgaagttctgttataacgagaaactggttcttctgggagacgagg 120
|||||||||||||| | |||||||| | | |||| | | |||||||| |||||||| |
Sbjct: 818 acataagagagatactacggttctgttgtgatgagagattagttcttctcggagacgaag 877
Query: 121 tttatcagcagaacatataccaggatgagcgtccctttatcagctccaag 170
| |||||||| || |||||||| ||||| |||||||||||||| ||||||
Sbjct: 878 tgtatcagcaaaatatataccaagatgaacgtccctttatcagttccaag 927
>PTA.sd.15074.C2 nseq=4
Length = 1297
Score = 36.2 bits (18), Expect = 0.077
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 64 taagagagatattgaagt 81
||||||||||||||||||
Sbjct: 929 taagagagatattgaagt 946
>At4g37060.F
Length = 1245
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 87 tataacgagaaactggt 103
|||||||||||||||||
Sbjct: 768 tataacgagaaactggt 752
>PTA.sd.7274.C1 nseq=6
Length = 2498
Score = 32.2 bits (16), Expect = 1.2
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 2 aagggcaatggtgatcattaaccc 25
||||| ||||||||||||| ||||
Sbjct: 508 aagggaaatggtgatcattcaccc 531
>PTA.sd.7122.C1 nseq=6
Length = 863
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 152 tccctttatcagctcc 167
||||||||||||||||
Sbjct: 119 tccctttatcagctcc 104
>PTA.sd.3572.C1 nseq=5
Length = 3276
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 79 agttctgttataacga 94
||||||||||||||||
Sbjct: 286 agttctgttataacga 301
>PTA.sd.16935.C1 nseq=18
Length = 3255
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 58 ctaacataagagagat 73
||||||||||||||||
Sbjct: 2960 ctaacataagagagat 2945
>PTA.sd.14301.C1 nseq=4
Length = 1306
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 63 ataagagagatattga 78
||||||||||||||||
Sbjct: 554 ataagagagatattga 569
>PTA.sd.14228.C1 nseq=11
Length = 2023
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 68 agagatattgaagttc 83
||||||||||||||||
Sbjct: 1439 agagatattgaagttc 1424
>PTA.sd.11647.C1 nseq=2
Length = 5688
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 122 ttatcagcagaacata 137
||||||||||||||||
Sbjct: 2438 ttatcagcagaacata 2423
>At2g07728.F
Length = 861
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 65 aagagagatattgaag 80
||||||||||||||||
Sbjct: 198 aagagagatattgaag 213
>PTA.sd.9818.C1 nseq=5
Length = 2776
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 aagggcaatggtgat 16
|||||||||||||||
Sbjct: 2542 aagggcaatggtgat 2528
>PTA.sd.9151.C1 nseq=29
Length = 1196
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 68 agagatattgaagtt 82
|||||||||||||||
Sbjct: 995 agagatattgaagtt 981
>PTA.sd.7612.C1 nseq=6
Length = 651
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 65 aagagagatattgaa 79
|||||||||||||||
Sbjct: 365 aagagagatattgaa 379
>PTA.sd.3797.C1 nseq=6
Length = 2217
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 agagagatattgaag 80
|||||||||||||||
Sbjct: 1524 agagagatattgaag 1538
>PTA.sd.350.C1 nseq=6
Length = 2587
Score = 30.2 bits (15), Expect = 4.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 100 tggttcttctgggagacga 118
|||| ||||||||||||||
Sbjct: 665 tggtgcttctgggagacga 683
>PTA.sd.2455.C1 nseq=6
Length = 1796
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 64 taagagagatattga 78
|||||||||||||||
Sbjct: 161 taagagagatattga 175
>PTA.sd.17169.C1 nseq=15
Length = 2697
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 79 agttctgttataacg 93
|||||||||||||||
Sbjct: 1656 agttctgttataacg 1642
>PTA.sd.17057.C1 nseq=18
Length = 1845
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 agagagatattgaag 80
|||||||||||||||
Sbjct: 37 agagagatattgaag 51
>PTA.sd.16027.C1 nseq=11
Length = 1724
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 93 gagaaactggttctt 107
|||||||||||||||
Sbjct: 1658 gagaaactggttctt 1672
>PTA.sd.15883.C1 nseq=17
Length = 880
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 132 aacatataccaggat 146
|||||||||||||||
Sbjct: 245 aacatataccaggat 259
>PTA.sd.15882.C1 nseq=16
Length = 3630
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 132 aacatataccaggat 146
|||||||||||||||
Sbjct: 3144 aacatataccaggat 3158
>PTA.sd.15775.C1 nseq=5
Length = 1547
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 155 ctttatcagctccaa 169
|||||||||||||||
Sbjct: 903 ctttatcagctccaa 889
>PTA.sd.15506.C1 nseq=5
Length = 1790
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 116 cgaggtttatcagca 130
|||||||||||||||
Sbjct: 1228 cgaggtttatcagca 1214
>PTA.sd.1307.C1 nseq=5
Length = 1779
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 154 cctttatcagctcca 168
|||||||||||||||
Sbjct: 512 cctttatcagctcca 498
>PTA.sd.1271.C1 nseq=35
Length = 1930
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 agacgaggtttatca 127
|||||||||||||||
Sbjct: 951 agacgaggtttatca 965
Score = 30.2 bits (15), Expect = 4.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 16 tcattaaccctgggaaccc 34
||||||||||||| |||||
Sbjct: 854 tcattaaccctggaaaccc 872
>At3g59230.F
Length = 1476
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 68 agagatattgaagtt 82
|||||||||||||||
Sbjct: 1230 agagatattgaagtt 1244
>At3g24290.F
Length = 1491
Score = 30.2 bits (15), Expect = 4.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 28 ggaacccaactggcc 42
|||||||||||||||
Sbjct: 99 ggaacccaactggcc 85
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 170
length of database: 39,126,732
effective HSP length: 16
effective length of query: 154
effective length of database: 38,700,540
effective search space: 5959883160
effective search space used: 5959883160
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)