BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_02197
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.14174.C1 nseq=2 595 e-170
PTA.sd.6582.C1 nseq=2 44 6e-04
At1g05470.F 44 6e-04
PTA.sd.3984.C1 nseq=7 36 0.14
At2g05290.F 34 0.56
PTA.sd.8699.C1 nseq=4 32 2.2
PTA.sd.759.C1 nseq=13 32 2.2
PTA.sd.5676.C1 nseq=5 32 2.2
PTA.sd.4155.C1 nseq=6 32 2.2
PTA.sd.1915.C1 nseq=8 32 2.2
PTA.sd.16770.C1 nseq=6 32 2.2
PTA.sd.15336.C1 nseq=3 32 2.2
PTA.sd.13133.C1 nseq=8 32 2.2
PTA.sd.10777.C1 nseq=11 32 2.2
At1g11070.F 32 2.2
>PTA.sd.14174.C1 nseq=2
Length = 1420
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 tcatatattgcagctatttcttggctctttttaaaaaaattttgcagggtctcaatccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcatatattgcagctatttcttggctctttttaaaaaaattttgcagggtctcaatccga 60
Query: 61 gatagtagttgaatctcttttagcttcaagcaatctcagatcttcaatgcctactcagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatagtagttgaatctcttttagcttcaagcaatctcagatcttcaatgcctactcagca 120
Query: 121 aatccaatccttaagagtctttgtggcgacatggaacgtgggaggaaaatctccacactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatccaatccttaagagtctttgtggcgacatggaacgtgggaggaaaatctccacactc 180
Query: 181 tggtcttaatcttgatgctttgcttcacgtgcatagtgaattcgatgtatacgttttagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggtcttaatcttgatgctttgcttcacgtgcatagtgaattcgatgtatacgttttagg 240
Query: 241 ttttcaggagattgttccattgaatgctggaaatgtccttgttcttggagacaacgagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttttcaggagattgttccattgaatgctggaaatgtccttgttcttggagacaacgagcc 300
>PTA.sd.6582.C1 nseq=2
Length = 1429
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 140 tttgtggcgacatggaacgtgggagg 165
||||||| ||||||||||||||||||
Sbjct: 13 tttgtggggacatggaacgtgggagg 38
>At1g05470.F
Length = 1758
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 248 gagattgttccattgaatgctggaaatgtccttg 281
||||||||||| | |||||||||||||||||||
Sbjct: 295 gagattgttcctcttaatgctggaaatgtccttg 328
Score = 36.2 bits (18), Expect = 0.14
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 138 tctttgtggcgacatggaacgt 159
|||||||||| |||||||||||
Sbjct: 185 tctttgtggctacatggaacgt 206
>PTA.sd.3984.C1 nseq=7
Length = 2277
Score = 36.2 bits (18), Expect = 0.14
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 248 gagattgttccattgaatgctggaaa 273
||||||||||| || |||||||||||
Sbjct: 556 gagattgttcctttaaatgctggaaa 581
>At2g05290.F
Length = 702
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 65 gtagttgaatctctttt 81
|||||||||||||||||
Sbjct: 529 gtagttgaatctctttt 513
>PTA.sd.8699.C1 nseq=4
Length = 2743
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 190 tcttgatgctttgctt 205
||||||||||||||||
Sbjct: 907 tcttgatgctttgctt 922
>PTA.sd.759.C1 nseq=13
Length = 1515
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 25 ctctttttaaaaaaat 40
||||||||||||||||
Sbjct: 1453 ctctttttaaaaaaat 1468
>PTA.sd.5676.C1 nseq=5
Length = 2503
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 64 agtagttgaatctctt 79
||||||||||||||||
Sbjct: 141 agtagttgaatctctt 126
>PTA.sd.4155.C1 nseq=6
Length = 1453
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 17 tttcttggctcttttt 32
||||||||||||||||
Sbjct: 108 tttcttggctcttttt 93
>PTA.sd.1915.C1 nseq=8
Length = 2189
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 192 ttgatgctttgcttca 207
||||||||||||||||
Sbjct: 2099 ttgatgctttgcttca 2114
>PTA.sd.16770.C1 nseq=6
Length = 1392
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 69 ttgaatctcttttagc 84
||||||||||||||||
Sbjct: 370 ttgaatctcttttagc 355
>PTA.sd.15336.C1 nseq=3
Length = 1296
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 132 taagagtctttgtggc 147
||||||||||||||||
Sbjct: 616 taagagtctttgtggc 601
>PTA.sd.13133.C1 nseq=8
Length = 1917
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 253 tgttccattgaatgct 268
||||||||||||||||
Sbjct: 687 tgttccattgaatgct 672
>PTA.sd.10777.C1 nseq=11
Length = 2457
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 117 agcaaatccaatcctt 132
||||||||||||||||
Sbjct: 214 agcaaatccaatcctt 199
>At1g11070.F
Length = 1665
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 272 aatgtccttgttcttg 287
||||||||||||||||
Sbjct: 1161 aatgtccttgttcttg 1146
>At4g16390.F PTA.sd.11989.singlet
Length = 2334
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 256 tccattgaatgctgg 270
|||||||||||||||
Sbjct: 29 tccattgaatgctgg 15
>At1g16650.F PTA.sd.1216.singlet
Length = 1470
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 276 tccttgttcttggag 290
|||||||||||||||
Sbjct: 1386 tccttgttcttggag 1372
>PTA.sd.9793.C1 nseq=16
Length = 1664
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 aatcttgatgctttg 202
|||||||||||||||
Sbjct: 1561 aatcttgatgctttg 1547
>PTA.sd.9728.C2 nseq=16
Length = 2076
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 tagcttcaagcaatc 95
|||||||||||||||
Sbjct: 1528 tagcttcaagcaatc 1542
>PTA.sd.7784.C1 nseq=4
Length = 2043
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 234 ttttaggttttcagg 248
|||||||||||||||
Sbjct: 87 ttttaggttttcagg 101
>PTA.sd.7326.C1 nseq=4
Length = 1400
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 93 atctcagatcttcaa 107
|||||||||||||||
Sbjct: 716 atctcagatcttcaa 730
>PTA.sd.6992.C1 nseq=18
Length = 3343
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 26 tctttttaaaaaaat 40
|||||||||||||||
Sbjct: 36 tctttttaaaaaaat 22
>PTA.sd.6067.C1 nseq=4
Length = 907
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 89 agcaatctcagatcttcaa 107
||||||||||| |||||||
Sbjct: 429 agcaatctcagctcttcaa 447
>PTA.sd.5982.C1 nseq=2
Length = 4054
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 tcttttagcttcaag 90
|||||||||||||||
Sbjct: 1544 tcttttagcttcaag 1530
>PTA.sd.5829.C1 nseq=2
Length = 1654
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 61 gatagtagttgaatc 75
|||||||||||||||
Sbjct: 38 gatagtagttgaatc 24
>PTA.sd.4608.C1 nseq=4
Length = 3119
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 253 tgttccattgaatgc 267
|||||||||||||||
Sbjct: 1211 tgttccattgaatgc 1197
>PTA.sd.4587.C1 nseq=7
Length = 2456
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 37 aaattttgcagggtctcaa 55
||||||||||| |||||||
Sbjct: 1338 aaattttgcagagtctcaa 1356
>PTA.sd.4586.C1 nseq=6
Length = 4610
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 gaggaaaatctccac 176
|||||||||||||||
Sbjct: 4371 gaggaaaatctccac 4357
>PTA.sd.4008.C1 nseq=23
Length = 1887
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 79 tttagcttcaagcaa 93
|||||||||||||||
Sbjct: 330 tttagcttcaagcaa 344
>PTA.sd.3838.C1 nseq=10
Length = 1359
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 tttttaaaaaaattt 42
|||||||||||||||
Sbjct: 1142 tttttaaaaaaattt 1156
>PTA.sd.3768.C1 nseq=3
Length = 472
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 243 ttcaggagattgttc 257
|||||||||||||||
Sbjct: 169 ttcaggagattgttc 183
>PTA.sd.3661.C1 nseq=11
Length = 1863
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 86 tcaagcaatctcaga 100
|||||||||||||||
Sbjct: 1541 tcaagcaatctcaga 1527
>PTA.sd.2708.C1 nseq=7
Length = 1986
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 163 aggaaaatctccaca 177
|||||||||||||||
Sbjct: 1010 aggaaaatctccaca 996
>PTA.sd.2340.C1 nseq=8
Length = 1942
Score = 30.2 bits (15), Expect = 8.7
Identities = 27/31 (87%)
Strand = Plus / Plus
Query: 243 ttcaggagattgttccattgaatgctggaaa 273
||||||| || ||||| || |||||||||||
Sbjct: 434 ttcaggaaatcgttcccttaaatgctggaaa 464
>PTA.sd.17992.C1 nseq=10
Length = 640
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 tagcttcaagcaatc 95
|||||||||||||||
Sbjct: 533 tagcttcaagcaatc 547
>PTA.sd.17096.C1 nseq=4
Length = 1076
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 25 ctctttttaaaaaaa 39
|||||||||||||||
Sbjct: 1019 ctctttttaaaaaaa 1005
>PTA.sd.15757.C1 nseq=3
Length = 2910
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 tttcttggctctttt 31
|||||||||||||||
Sbjct: 627 tttcttggctctttt 613
>PTA.sd.1541.C1 nseq=4
Length = 3439
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 275 gtccttgttcttgga 289
|||||||||||||||
Sbjct: 2159 gtccttgttcttgga 2145
>PTA.sd.14465.C1 nseq=5
Length = 2330
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 ctctttttaaaaaaa 39
|||||||||||||||
Sbjct: 2307 ctctttttaaaaaaa 2321
>PTA.sd.14370.C1 nseq=2
Length = 2241
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 72 aatctcttttagctt 86
|||||||||||||||
Sbjct: 1647 aatctcttttagctt 1633
>PTA.sd.14130.C1 nseq=4
Length = 2778
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 244 tcaggagattgttcc 258
|||||||||||||||
Sbjct: 722 tcaggagattgttcc 708
>PTA.sd.13541.C1 nseq=5
Length = 11389
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 180 ctggtcttaatcttg 194
|||||||||||||||
Sbjct: 8702 ctggtcttaatcttg 8716
>PTA.sd.1348.C1 nseq=9
Length = 2460
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 53 caatccgagatagta 67
|||||||||||||||
Sbjct: 1710 caatccgagatagta 1696
>PTA.sd.12816.C1 nseq=5
Length = 546
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 ctttttaaaaaaatt 41
|||||||||||||||
Sbjct: 75 ctttttaaaaaaatt 61
>PTA.sd.11988.C1 nseq=3
Length = 488
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 256 tccattgaatgctgg 270
|||||||||||||||
Sbjct: 155 tccattgaatgctgg 169
>PTA.sd.11662.C1 nseq=3
Length = 904
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 121 aatccaatccttaag 135
|||||||||||||||
Sbjct: 830 aatccaatccttaag 844
>PTA.sd.11137.C1 nseq=7
Length = 917
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 21 ttggctctttttaaa 35
|||||||||||||||
Sbjct: 595 ttggctctttttaaa 609
>PTA.sd.10234.C1 nseq=4
Length = 591
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 122 atccaatccttaaga 136
|||||||||||||||
Sbjct: 386 atccaatccttaaga 372
>At5g23370.F
Length = 660
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 80 ttagcttcaagcaat 94
|||||||||||||||
Sbjct: 644 ttagcttcaagcaat 658
>At5g07760.F
Length = 2499
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 72 aatctcttttagctt 86
|||||||||||||||
Sbjct: 1881 aatctcttttagctt 1867
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)