BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_02127
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.15941.C1 nseq=7 595 e-170
PTA.sd.3615.C1 nseq=4 141 3e-33
PTA.sd.2649.C1 nseq=3 38 0.036
PTA.sd.4644.C1 nseq=4 36 0.14
PTA.sd.15093.C1 nseq=8 36 0.14
At4g18520.F PTA.sd.12160.singlet 34 0.56
PTA.sd.9295.C1 nseq=12 32 2.2
PTA.sd.6254.C1 nseq=3 32 2.2
PTA.sd.5210.C1 nseq=9 32 2.2
PTA.sd.1680.C1 nseq=7 32 2.2
PTA.sd.16712.C1 nseq=7 32 2.2
At4g23880.F PTA.sd.12530.singlet 30 8.7
PTA.sd.9597.C1 nseq=2 30 8.7
PTA.sd.9173.C1 nseq=30 30 8.7
PTA.sd.8411.C1 nseq=69 30 8.7
>PTA.sd.15941.C1 nseq=7
Length = 2000
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 cgaaaccgttgttggatagagggatagaagctatagtggagctgcttgatccaaggctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 cgaaaccgttgttggatagagggatagaagctatagtggagctgcttgatccaaggctaa 1493
Query: 61 aatgcacaagaaaaaactcggttcaaatggagcggatgatccgtgctgcagcggcgtgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 aatgcacaagaaaaaactcggttcaaatggagcggatgatccgtgctgcagcggcgtgtg 1553
Query: 121 tgatcaatgaggagtcccgaagacccggtatggaagagattgtctcaatcttgaaaggcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 tgatcaatgaggagtcccgaagacccggtatggaagagattgtctcaatcttgaaaggcg 1613
Query: 181 aagaaggtgtagagccagaaacacattcaagcaggaaaactacaaatatttcgggtatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1614 aagaaggtgtagagccagaaacacattcaagcaggaaaactacaaatatttcgggtatga 1673
Query: 241 ttgactcttatacacaattgcaacaaaccaaatccgagatgaaatgtcatcttgatcttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1674 ttgactcttatacacaattgcaacaaaccaaatccgagatgaaatgtcatcttgatcttg 1733
>PTA.sd.3615.C1 nseq=4
Length = 1563
Score = 141 bits (71), Expect = 3e-33
Identities = 125/143 (87%)
Strand = Plus / Plus
Query: 3 aaaccgttgttggatagagggatagaagctatagtggagctgcttgatccaaggctaaaa 62
|||||||||||| |||||||||||||||||| || |||| |||| ||||||||||| |||
Sbjct: 1063 aaaccgttgttgcatagagggatagaagctacagaggagttgctagatccaaggctgaaa 1122
Query: 63 tgcacaagaaaaaactcggttcaaatggagcggatgatccgtgctgcagcggcgtgtgtg 122
|| || ||||||||||||| | |||||||| |||||||| ||||| || |||||||||
Sbjct: 1123 tgtactagaaaaaactcggcttcgatggagcgtatgatccgagctgcggcagcgtgtgtg 1182
Query: 123 atcaatgaggagtcccgaagacc 145
||||||||||| || ||||||||
Sbjct: 1183 atcaatgaggaatcacgaagacc 1205
>PTA.sd.2649.C1 nseq=3
Length = 1292
Score = 38.2 bits (19), Expect = 0.036
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 87 atggagcggatgatccgtg 105
|||||||||||||||||||
Sbjct: 914 atggagcggatgatccgtg 932
>PTA.sd.4644.C1 nseq=4
Length = 851
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 148 gtatggaagagattgtct 165
||||||||||||||||||
Sbjct: 391 gtatggaagagattgtct 408
>PTA.sd.15093.C1 nseq=8
Length = 1222
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 156 gagattgtctcaatcttg 173
||||||||||||||||||
Sbjct: 651 gagattgtctcaatcttg 668
>At4g18520.F PTA.sd.12160.singlet
Length = 1698
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 181 aagaaggtgtagagcca 197
|||||||||||||||||
Sbjct: 1328 aagaaggtgtagagcca 1344
>PTA.sd.9295.C1 nseq=12
Length = 1986
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 257 attgcaacaaaccaaa 272
||||||||||||||||
Sbjct: 1811 attgcaacaaaccaaa 1796
>PTA.sd.6254.C1 nseq=3
Length = 2098
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 58 taaaatgcacaagaaaaaac 77
|||||| |||||||||||||
Sbjct: 22 taaaattcacaagaaaaaac 41
>PTA.sd.5210.C1 nseq=9
Length = 1824
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 180 gaagaaggtgtagagccaga 199
||||||||||| ||||||||
Sbjct: 946 gaagaaggtgttgagccaga 965
>PTA.sd.1680.C1 nseq=7
Length = 710
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 72 aaaaactcggttcaaa 87
||||||||||||||||
Sbjct: 247 aaaaactcggttcaaa 262
>PTA.sd.16712.C1 nseq=7
Length = 1100
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 173 gaaaggcgaagaaggt 188
||||||||||||||||
Sbjct: 784 gaaaggcgaagaaggt 799
>At4g23880.F PTA.sd.12530.singlet
Length = 600
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 285 tgtcatcttgatctt 299
|||||||||||||||
Sbjct: 423 tgtcatcttgatctt 409
>PTA.sd.9597.C1 nseq=2
Length = 1153
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 ggatgatccgtgctg 108
|||||||||||||||
Sbjct: 663 ggatgatccgtgctg 677
>PTA.sd.9173.C1 nseq=30
Length = 1147
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 282 aaatgtcatcttgatcttg 300
|||||| ||||||||||||
Sbjct: 741 aaatgttatcttgatcttg 723
>PTA.sd.8411.C1 nseq=69
Length = 1369
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 62 atgcacaagaaaaaactcg 80
||||||||||||| |||||
Sbjct: 1156 atgcacaagaaaagactcg 1138
>PTA.sd.8175.C1 nseq=46
Length = 2470
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 tcaaatggagcggat 97
|||||||||||||||
Sbjct: 1345 tcaaatggagcggat 1331
>PTA.sd.8074.C1 nseq=8
Length = 1713
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 72 aaaaactcggttcaa 86
|||||||||||||||
Sbjct: 4 aaaaactcggttcaa 18
>PTA.sd.7900.C2 nseq=26
Length = 4248
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 aagcaggaaaactac 223
|||||||||||||||
Sbjct: 1653 aagcaggaaaactac 1667
>PTA.sd.6817.C1 nseq=14
Length = 2076
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 gaaaccgttgttgga 16
|||||||||||||||
Sbjct: 957 gaaaccgttgttgga 971
>PTA.sd.6531.C1 nseq=9
Length = 1637
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 aatggagcggatgat 100
|||||||||||||||
Sbjct: 316 aatggagcggatgat 330
>PTA.sd.5815.C1 nseq=4
Length = 2105
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 181 aagaaggtgtagagc 195
|||||||||||||||
Sbjct: 1371 aagaaggtgtagagc 1357
>PTA.sd.5466.C1 nseq=11
Length = 1200
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 tcggttcaaatggag 92
|||||||||||||||
Sbjct: 246 tcggttcaaatggag 232
>PTA.sd.407.C1 nseq=6
Length = 2376
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 149 tatggaagagattgt 163
|||||||||||||||
Sbjct: 2127 tatggaagagattgt 2113
>PTA.sd.3848.C1 nseq=3
Length = 2199
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 276 gagatgaaatgtcat 290
|||||||||||||||
Sbjct: 240 gagatgaaatgtcat 226
>PTA.sd.15876.C1 nseq=8
Length = 3640
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 22 ggatagaagctatag 36
|||||||||||||||
Sbjct: 3310 ggatagaagctatag 3324
>PTA.sd.14646.C1 nseq=5
Length = 907
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 gaaaccgttgttgga 16
|||||||||||||||
Sbjct: 410 gaaaccgttgttgga 396
>PTA.sd.1344.C1 nseq=10
Length = 1106
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 ggaaaactacaaata 228
|||||||||||||||
Sbjct: 1059 ggaaaactacaaata 1073
>PTA.sd.11113.C1 nseq=3
Length = 1992
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 gtctcaatcttgaaa 176
|||||||||||||||
Sbjct: 1565 gtctcaatcttgaaa 1579
>At4g19470.F
Length = 1254
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 atgcacaagaaaaaa 76
|||||||||||||||
Sbjct: 416 atgcacaagaaaaaa 430
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)