BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_02103
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.15682.C1 nseq=9 595 e-170
At5g35060.F 36 0.14
At1g63400.F 36 0.14
At1g63080.F 36 0.14
At1g62670.F 36 0.14
At1g26990.F 34 0.56
PTA.sd.5811.C1 nseq=6 32 2.2
PTA.sd.4556.C1 nseq=3 32 2.2
PTA.sd.4502.C1 nseq=6 32 2.2
PTA.sd.17266.C1 nseq=3 32 2.2
PTA.sd.11208.C1 nseq=4 32 2.2
At5g32460.F 32 2.2
At3g32110.F 32 2.2
At3g09520.F 32 2.2
At1g11610.F 32 2.2
>PTA.sd.15682.C1 nseq=9
Length = 926
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 cacgtcaacaccagacaaagtgtcgaacaaatactacttaggtccagctccattggaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cacgtcaacaccagacaaagtgtcgaacaaatactacttaggtccagctccattggaaga 468
Query: 61 aatggcgaggcaaatcgctacggcttcgggaccttgtgggaacaaccgagagtatctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aatggcgaggcaaatcgctacggcttcgggaccttgtgggaacaaccgagagtatctttt 528
Query: 121 caagctagagaaagcaatgttcgacattgagcatgaggaagagtatgtgattgagttagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 caagctagagaaagcaatgttcgacattgagcatgaggaagagtatgtgattgagttagc 588
Query: 181 gaatgaggttaggaagcaactcgatttaccggaggaagtgaaggcattgttgaagcctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gaatgaggttaggaagcaactcgatttaccggaggaagtgaaggcattgttgaagcctat 648
Query: 241 tgtttctcatgtatccgtcaagtctcaagctcatgtttccactcgtcaacgggtctttgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tgtttctcatgtatccgtcaagtctcaagctcatgtttccactcgtcaacgggtctttgc 708
>At5g35060.F
Length = 849
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 172 tgagttagcgaatgaggt 189
||||||||||||||||||
Sbjct: 630 tgagttagcgaatgaggt 647
>At1g63400.F
Length = 1734
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 122 aagctagagaaagcaatg 139
||||||||||||||||||
Sbjct: 1453 aagctagagaaagcaatg 1470
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 ttttcaagctagaga 131
|||||||||||||||
Sbjct: 1335 ttttcaagctagaga 1349
>At1g63080.F
Length = 1845
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 122 aagctagagaaagcaatg 139
||||||||||||||||||
Sbjct: 1393 aagctagagaaagcaatg 1410
>At1g62670.F
Length = 1893
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 122 aagctagagaaagcaatg 139
||||||||||||||||||
Sbjct: 1441 aagctagagaaagcaatg 1458
>At1g26990.F
Length = 4311
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 90 gaccttgtgggaacaac 106
|||||||||||||||||
Sbjct: 465 gaccttgtgggaacaac 481
>PTA.sd.5811.C1 nseq=6
Length = 1113
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 147 ttgagcatgaggaagagtat 166
||||||| ||||||||||||
Sbjct: 257 ttgagcaagaggaagagtat 276
>PTA.sd.4556.C1 nseq=3
Length = 1786
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 55 ggaagaaatggcgagg 70
||||||||||||||||
Sbjct: 683 ggaagaaatggcgagg 698
>PTA.sd.4502.C1 nseq=6
Length = 1246
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 226 attgttgaagcctatt 241
||||||||||||||||
Sbjct: 1016 attgttgaagcctatt 1001
>PTA.sd.17266.C1 nseq=3
Length = 1631
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 125 ctagagaaagcaatgt 140
||||||||||||||||
Sbjct: 395 ctagagaaagcaatgt 380
>PTA.sd.11208.C1 nseq=4
Length = 862
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 127 agagaaagcaatgttc 142
||||||||||||||||
Sbjct: 130 agagaaagcaatgttc 115
>At5g32460.F
Length = 1554
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 144 acattgagcatgagga 159
||||||||||||||||
Sbjct: 737 acattgagcatgagga 752
>At3g32110.F
Length = 5736
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 15 acaaagtgtcgaacaa 30
||||||||||||||||
Sbjct: 1170 acaaagtgtcgaacaa 1185
>At3g09520.F
Length = 1887
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 209 ccggaggaagtgaagg 224
||||||||||||||||
Sbjct: 1549 ccggaggaagtgaagg 1564
>At1g11610.F
Length = 1434
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 122 aagctagagaaagcaa 137
||||||||||||||||
Sbjct: 415 aagctagagaaagcaa 430
>At5g51670.F PTA.sd.16872.singlet
Length = 1425
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 54 tggaagaaatggcga 68
|||||||||||||||
Sbjct: 497 tggaagaaatggcga 511
>At3g06820.F PTA.sd.7927.singlet
Length = 1125
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 264 ctcaagctcatgttt 278
|||||||||||||||
Sbjct: 953 ctcaagctcatgttt 939
>At2g33250.F PTA.sd.6278.singlet
Length = 1590
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 149 gagcatgaggaagag 163
|||||||||||||||
Sbjct: 140 gagcatgaggaagag 126
>At1g22330.F PTA.sd.1635.singlet
Length = 876
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 246 ctcatgtatccgtca 260
|||||||||||||||
Sbjct: 409 ctcatgtatccgtca 423
>PTA.sd.9590.C1 nseq=21
Length = 3166
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 134 gcaatgttcgacatt 148
|||||||||||||||
Sbjct: 2103 gcaatgttcgacatt 2117
>PTA.sd.928.C1 nseq=105
Length = 1460
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 184 tgaggttaggaagca 198
|||||||||||||||
Sbjct: 938 tgaggttaggaagca 924
>PTA.sd.9031.C1 nseq=4
Length = 2032
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 ttgaagcctattgtt 244
|||||||||||||||
Sbjct: 691 ttgaagcctattgtt 705
>PTA.sd.8314.C1 nseq=5
Length = 1905
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 138 tgttcgacattgagc 152
|||||||||||||||
Sbjct: 553 tgttcgacattgagc 539
>PTA.sd.8154.C1 nseq=5
Length = 2046
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 ggaagtgaaggcatt 228
|||||||||||||||
Sbjct: 1928 ggaagtgaaggcatt 1914
>PTA.sd.8091.C1 nseq=22
Length = 1774
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 125 ctagagaaagcaatg 139
|||||||||||||||
Sbjct: 1688 ctagagaaagcaatg 1674
>PTA.sd.6943.C1 nseq=2
Length = 2401
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 204 atttaccggaggaag 218
|||||||||||||||
Sbjct: 1499 atttaccggaggaag 1513
>PTA.sd.4517.C2 nseq=5
Length = 1370
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 246 ctcatgtatccgtca 260
|||||||||||||||
Sbjct: 581 ctcatgtatccgtca 595
>PTA.sd.4165.C1 nseq=3
Length = 583
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 43 tccagctccattgga 57
|||||||||||||||
Sbjct: 194 tccagctccattgga 208
>PTA.sd.3831.C1 nseq=7
Length = 1301
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 52 attggaagaaatggc 66
|||||||||||||||
Sbjct: 479 attggaagaaatggc 465
>PTA.sd.3384.C1 nseq=4
Length = 2420
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 ttttcaagctagaga 131
|||||||||||||||
Sbjct: 1448 ttttcaagctagaga 1462
>PTA.sd.3368.C1 nseq=3
Length = 3407
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 ttttcaagctagaga 131
|||||||||||||||
Sbjct: 3134 ttttcaagctagaga 3148
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 ttttcaagctagaga 131
|||||||||||||||
Sbjct: 1334 ttttcaagctagaga 1348
>PTA.sd.3341.C1 nseq=4
Length = 2250
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 122 aagctagagaaagca 136
|||||||||||||||
Sbjct: 1503 aagctagagaaagca 1517
>PTA.sd.3314.C1 nseq=27
Length = 1784
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 114 atcttttcaagctagagaa 132
||||||| |||||||||||
Sbjct: 1199 atcttttgaagctagagaa 1217
>PTA.sd.2417.C1 nseq=29
Length = 2214
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 agacaaagtgtcgaa 27
|||||||||||||||
Sbjct: 970 agacaaagtgtcgaa 984
>PTA.sd.17926.C1 nseq=2
Length = 2934
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 ctccattggaagaaa 62
|||||||||||||||
Sbjct: 79 ctccattggaagaaa 65
>PTA.sd.17208.C1 nseq=6
Length = 1759
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 272 catgtttccactcgt 286
|||||||||||||||
Sbjct: 1122 catgtttccactcgt 1136
>PTA.sd.17155.C1 nseq=5
Length = 2536
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 148 tgagcatgaggaaga 162
|||||||||||||||
Sbjct: 2211 tgagcatgaggaaga 2225
>PTA.sd.15929.C1 nseq=3
Length = 1126
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 156 aggaagagtatgtgattgagtta 178
|||||||||||||| |||||||
Sbjct: 262 aggaagagtatgtggctgagtta 240
>PTA.sd.15709.C1 nseq=11
Length = 2010
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 224 gcattgttgaagcct 238
|||||||||||||||
Sbjct: 583 gcattgttgaagcct 597
>PTA.sd.15077.C1 nseq=4
Length = 1530
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 191 aggaagcaactcgat 205
|||||||||||||||
Sbjct: 100 aggaagcaactcgat 114
>PTA.sd.14382.C1 nseq=4
Length = 2469
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 209 ccggaggaagtgaaggcat 227
|||||||||||||| ||||
Sbjct: 2093 ccggaggaagtgaaagcat 2075
>PTA.sd.12760.C1 nseq=16
Length = 2348
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 122 aagctagagaaagca 136
|||||||||||||||
Sbjct: 1148 aagctagagaaagca 1134
>PTA.sd.11869.C1 nseq=7
Length = 730
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 cggaggaagtgaagg 224
|||||||||||||||
Sbjct: 415 cggaggaagtgaagg 429
>PTA.sd.11221.C1 nseq=3
Length = 3975
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 54 tggaagaaatggcga 68
|||||||||||||||
Sbjct: 2388 tggaagaaatggcga 2402
>PTA.sd.10880.C1 nseq=5
Length = 3066
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 149 gagcatgaggaagag 163
|||||||||||||||
Sbjct: 2372 gagcatgaggaagag 2386
>At5g62660.F
Length = 1140
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 9 caccagacaaagtgt 23
|||||||||||||||
Sbjct: 486 caccagacaaagtgt 500
>At5g56410.F
Length = 1512
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 157 ggaagagtatgtgat 171
|||||||||||||||
Sbjct: 702 ggaagagtatgtgat 716
>At3g55060.F
Length = 2691
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 aagaaatggcgaggc 71
|||||||||||||||
Sbjct: 2447 aagaaatggcgaggc 2461
>At3g27860.F
Length = 1959
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 gaaatggcgaggcaa 73
|||||||||||||||
Sbjct: 1121 gaaatggcgaggcaa 1135
>At3g14810.F
Length = 2562
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 gatttaccggaggaa 217
|||||||||||||||
Sbjct: 763 gatttaccggaggaa 777
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)