BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_02033
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.17227.C1 nseq=11 595 e-170
PTA.sd.8787.C1 nseq=12 32 2.2
PTA.sd.5919.C1 nseq=8 32 2.2
PTA.sd.3277.C1 nseq=6 32 2.2
PTA.sd.196.C1 nseq=4 32 2.2
PTA.sd.13643.C1 nseq=17 32 2.2
At5g40820.F 32 2.2
PTA.sd.9870.C1 nseq=2 30 8.7
PTA.sd.984.C1 nseq=3 30 8.7
PTA.sd.9380.C1 nseq=6 30 8.7
PTA.sd.8372.C1 nseq=11 30 8.7
PTA.sd.7225.C1 nseq=14 30 8.7
PTA.sd.6034.C1 nseq=12 30 8.7
PTA.sd.5979.C1 nseq=2 30 8.7
PTA.sd.2877.C1 nseq=2 30 8.7
>PTA.sd.17227.C1 nseq=11
Length = 1694
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 ttgtatcgaattgtgggctttaccgcaatttataagttctatcgttatcctgacaggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgtatcgaattgtgggctttaccgcaatttataagttctatcgttatcctgacaggctg 800
Query: 61 cggatgcgactcagccagatcttggtcttaccatccttccaaggaaaaggactcggaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cggatgcgactcagccagatcttggtcttaccatccttccaaggaaaaggactcggaagc 860
Query: 121 tatcttatggaggtagtaaacaacgtggccataacagaaaacgtttacgatttgacagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tatcttatggaggtagtaaacaacgtggccataacagaaaacgtttacgatttgacagtt 920
Query: 181 gaggagccatctgaaaagttccaacacatccgcacttgcatagacataaaccgcttgcgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gaggagccatctgaaaagttccaacacatccgcacttgcatagacataaaccgcttgcgc 980
Query: 241 agtttcgatccaatcaaaccagacattgattcagctgttcagactctcacaaaaggaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 agtttcgatccaatcaaaccagacattgattcagctgttcagactctcacaaaaggaaag 1040
>PTA.sd.8787.C1 nseq=12
Length = 1120
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 160 aacgtttacgatttga 175
||||||||||||||||
Sbjct: 1030 aacgtttacgatttga 1045
>PTA.sd.5919.C1 nseq=8
Length = 1779
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 188 catctgaaaagttcca 203
||||||||||||||||
Sbjct: 1236 catctgaaaagttcca 1251
>PTA.sd.3277.C1 nseq=6
Length = 1376
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 94 tccttccaaggaaaag 109
||||||||||||||||
Sbjct: 91 tccttccaaggaaaag 106
>PTA.sd.196.C1 nseq=4
Length = 2248
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 253 atcaaaccagacattg 268
||||||||||||||||
Sbjct: 757 atcaaaccagacattg 772
>PTA.sd.13643.C1 nseq=17
Length = 1692
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 199 ttccaacacatccgca 214
||||||||||||||||
Sbjct: 481 ttccaacacatccgca 496
>At5g40820.F
Length = 8433
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 194 aaaagttccaacacat 209
||||||||||||||||
Sbjct: 4916 aaaagttccaacacat 4901
>PTA.sd.9870.C1 nseq=2
Length = 4587
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 286 ctcacaaaaggaaag 300
|||||||||||||||
Sbjct: 1002 ctcacaaaaggaaag 988
>PTA.sd.984.C1 nseq=3
Length = 704
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 280 cagactctcacaaaa 294
|||||||||||||||
Sbjct: 569 cagactctcacaaaa 555
>PTA.sd.9380.C1 nseq=6
Length = 1881
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 86 tcttaccatccttcc 100
|||||||||||||||
Sbjct: 1601 tcttaccatccttcc 1587
>PTA.sd.8372.C1 nseq=11
Length = 5373
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 96 cttccaaggaaaagg 110
|||||||||||||||
Sbjct: 3807 cttccaaggaaaagg 3821
>PTA.sd.7225.C1 nseq=14
Length = 1367
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 116 gaagctatcttatgg 130
|||||||||||||||
Sbjct: 582 gaagctatcttatgg 596
>PTA.sd.6034.C1 nseq=12
Length = 2988
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 261 agacattgattcagc 275
|||||||||||||||
Sbjct: 169 agacattgattcagc 183
>PTA.sd.5979.C1 nseq=2
Length = 2689
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 234 cttgcgcagtttcga 248
|||||||||||||||
Sbjct: 2041 cttgcgcagtttcga 2027
>PTA.sd.2877.C1 nseq=2
Length = 3486
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 93 atccttccaaggaaa 107
|||||||||||||||
Sbjct: 2708 atccttccaaggaaa 2694
>PTA.sd.17277.C1 nseq=6
Length = 1682
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 250 ccaatcaaaccagac 264
|||||||||||||||
Sbjct: 1302 ccaatcaaaccagac 1316
>PTA.sd.17242.C1 nseq=4
Length = 830
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 278 ttcagactctcacaa 292
|||||||||||||||
Sbjct: 68 ttcagactctcacaa 82
>PTA.sd.15614.C1 nseq=2
Length = 684
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 102 aggaaaaggactcgg 116
|||||||||||||||
Sbjct: 259 aggaaaaggactcgg 273
>PTA.sd.15418.C1 nseq=27
Length = 750
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 249 tccaatcaaaccaga 263
|||||||||||||||
Sbjct: 533 tccaatcaaaccaga 519
>PTA.sd.11713.C1 nseq=3
Length = 722
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 255 caaaccagacattga 269
|||||||||||||||
Sbjct: 476 caaaccagacattga 490
>PTA.sd.10113.C1 nseq=5
Length = 2040
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 ctgacaggctgcgga 64
|||||||||||||||
Sbjct: 1142 ctgacaggctgcgga 1128
>At5g10200.F
Length = 1866
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 103 ggaaaaggactcggaagct 121
||||||| |||||||||||
Sbjct: 1254 ggaaaagtactcggaagct 1272
>At4g11470.F
Length = 2001
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 gctttaccgcaattt 31
|||||||||||||||
Sbjct: 1102 gctttaccgcaattt 1088
>At3g55060.F
Length = 2691
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 ttccaaggaaaagga 111
|||||||||||||||
Sbjct: 2247 ttccaaggaaaagga 2261
>At2g14940.F
Length = 3450
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 190 tctgaaaagttccaa 204
|||||||||||||||
Sbjct: 1714 tctgaaaagttccaa 1700
>At1g44120.F
Length = 6345
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 253 atcaaaccagacatt 267
|||||||||||||||
Sbjct: 956 atcaaaccagacatt 942
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)