BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_02009
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.9404.C1 nseq=3 595 e-170
PTA.sd.927.C1 nseq=5 96 2e-19
PTA.sd.13966.C1 nseq=2 38 0.036
PTA.sd.3679.C1 nseq=8 36 0.14
PTA.sd.11550.C1 nseq=3 36 0.14
PTA.sd.9546.C1 nseq=2 34 0.56
At3g58380.F PTA.sd.10664.singlet 32 2.2
At3g58220.F PTA.sd.10662.singlet 32 2.2
PTA.sd.9701.C1 nseq=2 32 2.2
PTA.sd.7741.C1 nseq=4 32 2.2
PTA.sd.7536.C1 nseq=8 32 2.2
PTA.sd.4889.C1 nseq=2 32 2.2
PTA.sd.3572.C1 nseq=5 32 2.2
PTA.sd.3372.C1 nseq=2 32 2.2
PTA.sd.16811.C1 nseq=5 32 2.2
>PTA.sd.9404.C1 nseq=3
Length = 941
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 gttagaggtgaaggaagaacttgcgatatggcctgagcaagatgaccgcgagagaagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gttagaggtgaaggaagaacttgcgatatggcctgagcaagatgaccgcgagagaagatg 675
Query: 61 gctgaatgtaaaagaagccttggagctgtgtcggtatgagtggatgcagagcgctcttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gctgaatgtaaaagaagccttggagctgtgtcggtatgagtggatgcagagcgctcttga 735
Query: 121 agagtttctacgagtaatggcagaagaaggaagcacaaaggaagactctcttgccatttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agagtttctacgagtaatggcagaagaaggaagcacaaaggaagactctcttgccatttc 795
Query: 181 cagcatttcaaatcgaggagagcgtcaaattgatcctcgctactgctttgtagtctaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 cagcatttcaaatcgaggagagcgtcaaattgatcctcgctactgctttgtagtctaact 855
Query: 241 agtttcgtttctctaggcgtatcaaacctctctctcaattgttatatattatggaaagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 agtttcgtttctctaggcgtatcaaacctctctctcaattgttatatattatggaaagac 915
>PTA.sd.927.C1 nseq=5
Length = 1018
Score = 95.6 bits (48), Expect = 2e-19
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 54 gaagatggctgaatgtaaaagaagccttggagctgtgtcggtatgagtggatgcagagcg 113
|||||||| ||| ||| |||||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 707 gaagatggttgactgttaaagaagcgttggagctttgtcggtatgagtggatgcagagag 766
Query: 114 ctcttgaagagtttctacgagtaatggcagaagaaggaag 153
| |||||||||||| | ||||||||| ||| ||| ||||
Sbjct: 767 cacttgaagagtttttgagagtaatggaagatgaaagaag 806
>PTA.sd.13966.C1 nseq=2
Length = 3678
Score = 38.2 bits (19), Expect = 0.036
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 137 atggcagaagaaggaagca 155
|||||||||||||||||||
Sbjct: 1664 atggcagaagaaggaagca 1646
>PTA.sd.3679.C1 nseq=8
Length = 2929
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 79 cttggagctgtgtcggta 96
||||||||||||||||||
Sbjct: 2489 cttggagctgtgtcggta 2472
>PTA.sd.11550.C1 nseq=3
Length = 1129
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 162 aagactctcttgccattt 179
||||||||||||||||||
Sbjct: 935 aagactctcttgccattt 952
>PTA.sd.9546.C1 nseq=2
Length = 1568
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 41 gatgaccgcgagagaagatgg 61
||||||| |||||||||||||
Sbjct: 936 gatgacctcgagagaagatgg 956
>At3g58380.F PTA.sd.10664.singlet
Length = 924
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 508 gtgaaggaagaacttg 493
>At3g58220.F PTA.sd.10662.singlet
Length = 1464
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 1057 gtgaaggaagaacttg 1042
>PTA.sd.9701.C1 nseq=2
Length = 1170
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 715 gtgaaggaagaacttg 700
>PTA.sd.7741.C1 nseq=4
Length = 1294
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 45 accgcgagagaagatg 60
||||||||||||||||
Sbjct: 297 accgcgagagaagatg 282
>PTA.sd.7536.C1 nseq=8
Length = 2940
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 110 agcgctcttgaagagt 125
||||||||||||||||
Sbjct: 1878 agcgctcttgaagagt 1893
>PTA.sd.4889.C1 nseq=2
Length = 855
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 4 agaggtgaaggaagaa 19
||||||||||||||||
Sbjct: 465 agaggtgaaggaagaa 480
>PTA.sd.3572.C1 nseq=5
Length = 3276
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 145 agaaggaagcacaaag 160
||||||||||||||||
Sbjct: 3041 agaaggaagcacaaag 3056
>PTA.sd.3372.C1 nseq=2
Length = 835
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 165 actctcttgccatttc 180
||||||||||||||||
Sbjct: 344 actctcttgccatttc 359
>PTA.sd.16811.C1 nseq=5
Length = 1313
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 4 agaggtgaaggaagaa 19
||||||||||||||||
Sbjct: 504 agaggtgaaggaagaa 519
>PTA.sd.13608.C1 nseq=6
Length = 1815
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 171 ttgccatttccagcat 186
||||||||||||||||
Sbjct: 587 ttgccatttccagcat 572
>PTA.sd.10889.C1 nseq=60
Length = 1255
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 73 agaagccttggagctg 88
||||||||||||||||
Sbjct: 895 agaagccttggagctg 910
>At5g45730.F
Length = 1560
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 9 tgaaggaagaacttgc 24
||||||||||||||||
Sbjct: 926 tgaaggaagaacttgc 911
>At3g58430.F
Length = 1659
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 1060 gtgaaggaagaacttg 1045
>At3g58410.F
Length = 987
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 580 gtgaaggaagaacttg 565
>At3g58370.F
Length = 660
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 253 gtgaaggaagaacttg 238
>At3g58340.F
Length = 978
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 592 gtgaaggaagaacttg 577
>At3g58240.F
Length = 954
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 556 gtgaaggaagaacttg 541
>At3g49480.F
Length = 930
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 223 ctgctttgtagtctaa 238
||||||||||||||||
Sbjct: 274 ctgctttgtagtctaa 259
>At3g44800.F
Length = 1524
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 481 gtgaaggaagaacttg 466
>At2g05410.F
Length = 798
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 379 gtgaaggaagaacttg 364
>At2g05400.F
Length = 654
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 241 gtgaaggaagaacttg 226
>At1g31400.F
Length = 837
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 490 gtgaaggaagaacttg 475
>At1g31390.F
Length = 807
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 499 gtgaaggaagaacttg 484
>At1g31380.F
Length = 528
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 175 gtgaaggaagaacttg 160
>At1g31370.F
Length = 582
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 8 gtgaaggaagaacttg 23
||||||||||||||||
Sbjct: 361 gtgaaggaagaacttg 346
>At5g23430.F PTA.sd.15485.singlet
Length = 2799
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 51 agagaagatggctga 65
|||||||||||||||
Sbjct: 2325 agagaagatggctga 2339
>At2g41440.F PTA.sd.6906.singlet
Length = 1635
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 141 cagaagaaggaagca 155
|||||||||||||||
Sbjct: 514 cagaagaaggaagca 528
>At1g48175.F PTA.sd.2546.singlet
Length = 399
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 taatggcagaagaag 149
|||||||||||||||
Sbjct: 299 taatggcagaagaag 313
>At1g33980.F PTA.sd.2349.singlet
Length = 1551
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 tcaaattgatcctcg 219
|||||||||||||||
Sbjct: 78 tcaaattgatcctcg 92
>PTA.sd.9904.C1 nseq=2
Length = 1581
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 268 ctctctctcaattgt 282
|||||||||||||||
Sbjct: 849 ctctctctcaattgt 835
>PTA.sd.9576.C1 nseq=10
Length = 1309
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 actctcttgccattt 179
|||||||||||||||
Sbjct: 1246 actctcttgccattt 1260
>PTA.sd.9126.C1 nseq=10
Length = 854
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 216 ctcgctactgctttg 230
|||||||||||||||
Sbjct: 332 ctcgctactgctttg 346
>PTA.sd.7856.C1 nseq=3
Length = 3552
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 139 ggcagaagaaggaag 153
|||||||||||||||
Sbjct: 2570 ggcagaagaaggaag 2584
>PTA.sd.7813.C1 nseq=8
Length = 723
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 155 acaaaggaagactct 169
|||||||||||||||
Sbjct: 62 acaaaggaagactct 76
>PTA.sd.7473.C1 nseq=8
Length = 1203
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 285 tatattatggaaaga 299
|||||||||||||||
Sbjct: 338 tatattatggaaaga 352
>PTA.sd.746.C1 nseq=2
Length = 1476
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 209 attgatcctcgctac 223
|||||||||||||||
Sbjct: 397 attgatcctcgctac 383
>PTA.sd.7379.C1 nseq=36
Length = 3285
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 tttccagcatttcaa 191
|||||||||||||||
Sbjct: 3160 tttccagcatttcaa 3146
>PTA.sd.7164.C1 nseq=2
Length = 2299
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 168 ctcttgccatttccagcat 186
||||| |||||||||||||
Sbjct: 19 ctctttccatttccagcat 1
>PTA.sd.6458.C1 nseq=4
Length = 683
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 146 gaaggaagcacaaaggaag 164
|||||||||||| ||||||
Sbjct: 318 gaaggaagcacacaggaag 336
>PTA.sd.6169.C1 nseq=10
Length = 2529
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 atttccagcatttca 190
|||||||||||||||
Sbjct: 2382 atttccagcatttca 2368
>PTA.sd.5580.C1 nseq=4
Length = 3199
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 283 tatatattatggaaa 297
|||||||||||||||
Sbjct: 694 tatatattatggaaa 708
>PTA.sd.49.C1 nseq=2
Length = 1573
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 gcagaagaaggaagc 154
|||||||||||||||
Sbjct: 848 gcagaagaaggaagc 862
>PTA.sd.4044.C1 nseq=4
Length = 2219
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 264 aaacctctctctcaa 278
|||||||||||||||
Sbjct: 1710 aaacctctctctcaa 1696
>PTA.sd.3837.C1 nseq=2
Length = 1300
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 283 tatatattatggaaa 297
|||||||||||||||
Sbjct: 1285 tatatattatggaaa 1299
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)