BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_01939
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.2391.C1 nseq=34 595 e-170
At1g65200.F 38 0.036
PTA.sd.16746.C1 nseq=4 36 0.14
PTA.sd.12974.C1 nseq=4 34 0.56
PTA.sd.8838.C1 nseq=25 32 2.2
PTA.sd.2309.C1 nseq=5 32 2.2
At5g26760.F PTA.sd.15707.singlet 30 8.7
PTA.sd.9301.C1 nseq=6 30 8.7
PTA.sd.9227.C1 nseq=5 30 8.7
PTA.sd.8132.C1 nseq=6 30 8.7
PTA.sd.8074.C1 nseq=8 30 8.7
PTA.sd.8023.C1 nseq=8 30 8.7
PTA.sd.781.C1 nseq=7 30 8.7
PTA.sd.7308.C1 nseq=7 30 8.7
PTA.sd.5494.C1 nseq=3 30 8.7
>PTA.sd.2391.C1 nseq=34
Length = 875
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 taaaccttcgcttaatttggctaaacctctgactggatttctttctccttccactgcgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 taaaccttcgcttaatttggctaaacctctgactggatttctttctccttccactgcgtc 205
Query: 61 gacgtctcgaaccgcattcaccgtcgctccgaaattcgcggaatcagtcgtcgaagctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gacgtctcgaaccgcattcaccgtcgctccgaaattcgcggaatcagtcgtcgaagctga 265
Query: 121 accggagactaccgatatcgaagctgtggtggtttccgatgtttcggaggttactgagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 accggagactaccgatatcgaagctgtggtggtttccgatgtttcggaggttactgagga 325
Query: 181 aaaagctaaacgagaagagattttcgctgttattatggttggtggacgccaatacatagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaaagctaaacgagaagagattttcgctgttattatggttggtggacgccaatacatagt 385
Query: 241 gtttccagggagatatctctacactcagaggctaaaagatgcaaatgttgatgaccagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtttccagggagatatctctacactcagaggctaaaagatgcaaatgttgatgaccagat 445
>At1g65200.F
Length = 3306
Score = 38.2 bits (19), Expect = 0.036
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 gaagagattttcgctgtta 212
|||||||||||||||||||
Sbjct: 45 gaagagattttcgctgtta 27
>PTA.sd.16746.C1 nseq=4
Length = 2648
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 174 ctgaggaaaaagctaaac 191
||||||||||||||||||
Sbjct: 655 ctgaggaaaaagctaaac 672
>PTA.sd.12974.C1 nseq=4
Length = 2939
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 183 aagctaaacgagaagag 199
|||||||||||||||||
Sbjct: 2301 aagctaaacgagaagag 2317
>PTA.sd.8838.C1 nseq=25
Length = 1823
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 24 aacctctgactggatt 39
||||||||||||||||
Sbjct: 350 aacctctgactggatt 365
>PTA.sd.2309.C1 nseq=5
Length = 3973
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 35 ggatttctttctcctt 50
||||||||||||||||
Sbjct: 223 ggatttctttctcctt 208
>At5g26760.F PTA.sd.15707.singlet
Length = 2334
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 gaggttactgaggaa 181
|||||||||||||||
Sbjct: 1585 gaggttactgaggaa 1599
>PTA.sd.9301.C1 nseq=6
Length = 1945
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 277 agatgcaaatgttga 291
|||||||||||||||
Sbjct: 469 agatgcaaatgttga 455
>PTA.sd.9227.C1 nseq=5
Length = 2161
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 tctttctccttccac 54
|||||||||||||||
Sbjct: 723 tctttctccttccac 709
>PTA.sd.8132.C1 nseq=6
Length = 998
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 191 cgagaagagattttc 205
|||||||||||||||
Sbjct: 35 cgagaagagattttc 49
>PTA.sd.8074.C1 nseq=8
Length = 1713
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 147 tggtggtttccgatg 161
|||||||||||||||
Sbjct: 49 tggtggtttccgatg 63
>PTA.sd.8023.C1 nseq=8
Length = 2109
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 acgtctcgaaccgca 76
|||||||||||||||
Sbjct: 1531 acgtctcgaaccgca 1517
>PTA.sd.781.C1 nseq=7
Length = 1417
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 ctgactggatttctt 43
|||||||||||||||
Sbjct: 884 ctgactggatttctt 898
>PTA.sd.7308.C1 nseq=7
Length = 6512
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 agagattttcgctgt 210
|||||||||||||||
Sbjct: 4748 agagattttcgctgt 4762
>PTA.sd.5494.C1 nseq=3
Length = 2544
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 aaacgagaagagatt 202
|||||||||||||||
Sbjct: 2349 aaacgagaagagatt 2335
>PTA.sd.4711.C1 nseq=42
Length = 848
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 aaaccttcgcttaat 16
|||||||||||||||
Sbjct: 843 aaaccttcgcttaat 829
>PTA.sd.4710.C1 nseq=5
Length = 2065
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 aaaccttcgcttaat 16
|||||||||||||||
Sbjct: 2048 aaaccttcgcttaat 2062
>PTA.sd.4346.C1 nseq=4
Length = 2907
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 234 acatagtgtttccag 248
|||||||||||||||
Sbjct: 905 acatagtgtttccag 891
>PTA.sd.3512.C1 nseq=3
Length = 4207
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 37 atttctttctccttc 51
|||||||||||||||
Sbjct: 3666 atttctttctccttc 3652
>PTA.sd.2884.C1 nseq=9
Length = 1793
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 277 agatgcaaatgttga 291
|||||||||||||||
Sbjct: 1499 agatgcaaatgttga 1485
>PTA.sd.18007.C1 nseq=7
Length = 1590
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 116 gctgaaccggagact 130
|||||||||||||||
Sbjct: 1025 gctgaaccggagact 1011
>PTA.sd.17666.C1 nseq=4
Length = 2203
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 43 ttctccttccactgc 57
|||||||||||||||
Sbjct: 738 ttctccttccactgc 724
>PTA.sd.17553.C1 nseq=7
Length = 1147
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 251 agatatctctacact 265
|||||||||||||||
Sbjct: 56 agatatctctacact 42
>PTA.sd.16715.C1 nseq=18
Length = 2227
Score = 30.2 bits (15), Expect = 8.7
Identities = 22/23 (95%), Gaps = 1/23 (4%)
Strand = Plus / Minus
Query: 272 ctaaaagatgcaaatgttgatga 294
|||||||||||||| ||||||||
Sbjct: 400 ctaaaagatgcaaa-gttgatga 379
>PTA.sd.16350.C1 nseq=6
Length = 1596
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 242 tttccagggagatatctct 260
||||||||||||| |||||
Sbjct: 207 tttccagggagatttctct 189
>PTA.sd.16103.C1 nseq=8
Length = 2212
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 34 tggatttctttctcc 48
|||||||||||||||
Sbjct: 632 tggatttctttctcc 646
>PTA.sd.12921.C1 nseq=8
Length = 3209
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 gcttaatttggctaa 24
|||||||||||||||
Sbjct: 1604 gcttaatttggctaa 1618
>PTA.sd.11760.C1 nseq=7
Length = 1098
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 38 tttctttctccttccactg 56
|||| ||||||||||||||
Sbjct: 532 tttccttctccttccactg 514
>PTA.sd.11445.C1 nseq=20
Length = 3343
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 179 gaaaaagctaaacga 193
|||||||||||||||
Sbjct: 2404 gaaaaagctaaacga 2418
>PTA.sd.11432.C1 nseq=5
Length = 2838
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 219 ttggtggacgccaat 233
|||||||||||||||
Sbjct: 1891 ttggtggacgccaat 1905
>PTA.sd.10890.C1 nseq=60
Length = 1431
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 166 ggaggttactgagga 180
|||||||||||||||
Sbjct: 157 ggaggttactgagga 171
>At5g55400.F
Length = 2145
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 36 gatttctttctcctt 50
|||||||||||||||
Sbjct: 192 gatttctttctcctt 178
>At5g41920.F
Length = 1218
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 gaagctgtggtggtt 154
|||||||||||||||
Sbjct: 706 gaagctgtggtggtt 720
>At4g03310.F
Length = 1689
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 ctttctccttccact 55
|||||||||||||||
Sbjct: 550 ctttctccttccact 536
>At3g10180.F
Length = 1380
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 190 acgagaagagattttcgct 208
||||||||||||| |||||
Sbjct: 480 acgagaagagattgtcgct 498
>At1g80330.F
Length = 1068
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 cttccactgcgtcga 62
|||||||||||||||
Sbjct: 139 cttccactgcgtcga 125
>At1g65570.F
Length = 1194
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 129 ctaccgatatcgaag 143
|||||||||||||||
Sbjct: 626 ctaccgatatcgaag 640
>At1g05700.F
Length = 2532
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 185 gctaaacgagaagag 199
|||||||||||||||
Sbjct: 2211 gctaaacgagaagag 2225
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)