BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_01915
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.15238.C1 nseq=9 595 e-170
PTA.sd.4305.C1 nseq=12 34 0.56
PTA.sd.13688.C1 nseq=34 34 0.56
At5g06900.F 34 0.56
PTA.sd.378.C1 nseq=5 32 2.2
PTA.sd.2978.C1 nseq=13 32 2.2
PTA.sd.2595.C1 nseq=8 32 2.2
PTA.sd.10195.C1 nseq=3 32 2.2
At5g29100.F 32 2.2
At4g03460.F 32 2.2
PTA.sd.7515.C1 nseq=3 30 8.7
PTA.sd.6974.C1 nseq=2 30 8.7
PTA.sd.6486.C1 nseq=5 30 8.7
PTA.sd.4740.C1 nseq=19 30 8.7
PTA.sd.3626.C1 nseq=5 30 8.7
>PTA.sd.15238.C1 nseq=9
Length = 936
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 ggcctctaagggtttcaagtctgtcactttcgatacgagaggtgccggaaaatccaccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggcctctaagggtttcaagtctgtcactttcgatacgagaggtgccggaaaatccaccgg 312
Query: 61 aagagctactcttaccggctttgctgaggtcaaggatgtggtcgctgtttgtcggtggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aagagctactcttaccggctttgctgaggtcaaggatgtggtcgctgtttgtcggtggct 372
Query: 121 ttgtcagaatgttgatgctcataggatcctgctcgtgggttcttctgctggtgcaccaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttgtcagaatgttgatgctcataggatcctgctcgtgggttcttctgctggtgcaccaat 432
Query: 181 cgcaggatcagcggtggagcaagtagagcaagtggtgggatatgtgagtttgggataccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cgcaggatcagcggtggagcaagtagagcaagtggtgggatatgtgagtttgggataccc 492
Query: 241 atttggcctaatggcctcgattctctttgggcgacaccacaaggccattctctcatcccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atttggcctaatggcctcgattctctttgggcgacaccacaaggccattctctcatcccc 552
>PTA.sd.4305.C1 nseq=12
Length = 1619
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 8 aagggtttcaagtctgtcact 28
||||||||||||| |||||||
Sbjct: 433 aagggtttcaagtatgtcact 453
>PTA.sd.13688.C1 nseq=34
Length = 1366
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 163 ttctgctggtgcaccaa 179
|||||||||||||||||
Sbjct: 916 ttctgctggtgcaccaa 900
>At5g06900.F
Length = 1524
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 204 tagagcaagtggtggga 220
|||||||||||||||||
Sbjct: 1001 tagagcaagtggtggga 1017
>PTA.sd.378.C1 nseq=5
Length = 3943
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 250 aatggcctcgattctc 265
||||||||||||||||
Sbjct: 1708 aatggcctcgattctc 1723
>PTA.sd.2978.C1 nseq=13
Length = 1679
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 132 ttgatgctcataggat 147
||||||||||||||||
Sbjct: 1003 ttgatgctcataggat 1018
>PTA.sd.2595.C1 nseq=8
Length = 4209
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 50 aaatccaccggaagag 65
||||||||||||||||
Sbjct: 3166 aaatccaccggaagag 3151
>PTA.sd.10195.C1 nseq=3
Length = 1116
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 161 tcttctgctggtgcac 176
||||||||||||||||
Sbjct: 1028 tcttctgctggtgcac 1013
>At5g29100.F
Length = 1446
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 119 ctttgtcagaatgttgatgc 138
|||||||| |||||||||||
Sbjct: 1014 ctttgtcataatgttgatgc 995
>At4g03460.F
Length = 1914
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 164 tctgctggtgcaccaa 179
||||||||||||||||
Sbjct: 1333 tctgctggtgcaccaa 1348
>PTA.sd.7515.C1 nseq=3
Length = 3675
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 278 cacaaggccattctc 292
|||||||||||||||
Sbjct: 2254 cacaaggccattctc 2268
>PTA.sd.6974.C1 nseq=2
Length = 654
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 252 tggcctcgattctct 266
|||||||||||||||
Sbjct: 222 tggcctcgattctct 236
>PTA.sd.6486.C1 nseq=5
Length = 750
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 219 gatatgtgagtttgg 233
|||||||||||||||
Sbjct: 700 gatatgtgagtttgg 714
>PTA.sd.4740.C1 nseq=19
Length = 2412
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 185 ggatcagcggtggag 199
|||||||||||||||
Sbjct: 764 ggatcagcggtggag 778
>PTA.sd.3626.C1 nseq=5
Length = 1300
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 110 tgtcggtggctttgt 124
|||||||||||||||
Sbjct: 123 tgtcggtggctttgt 109
>PTA.sd.3018.C1 nseq=11
Length = 5617
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 132 ttgatgctcatagga 146
|||||||||||||||
Sbjct: 1961 ttgatgctcatagga 1947
>PTA.sd.2901.C1 nseq=6
Length = 765
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 268 tgggcgacaccacaa 282
|||||||||||||||
Sbjct: 273 tgggcgacaccacaa 287
>PTA.sd.2885.C1 nseq=3
Length = 3250
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 126 agaatgttgatgctc 140
|||||||||||||||
Sbjct: 1309 agaatgttgatgctc 1295
>PTA.sd.2225.C1 nseq=13
Length = 2062
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 117 ggctttgtcagaatgttgatgct 139
||||||||||||| ||||||||
Sbjct: 716 ggctttgtcagaagcttgatgct 738
>PTA.sd.17784.C1 nseq=4
Length = 4351
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 gcaagtagagcaagt 213
|||||||||||||||
Sbjct: 4181 gcaagtagagcaagt 4167
>PTA.sd.15516.C1 nseq=15
Length = 820
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 70 tcttaccggctttgc 84
|||||||||||||||
Sbjct: 171 tcttaccggctttgc 185
>PTA.sd.14682.C1 nseq=10
Length = 1411
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 ccggaaaatccaccg 59
|||||||||||||||
Sbjct: 266 ccggaaaatccaccg 280
>At5g62250.F
Length = 1650
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 159 gttcttctgctggtg 173
|||||||||||||||
Sbjct: 808 gttcttctgctggtg 794
>At5g50480.F
Length = 609
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 183 caggatcagcggtgg 197
|||||||||||||||
Sbjct: 424 caggatcagcggtgg 410
>At4g35610.F
Length = 816
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 194 gtggagcaagtagag 208
|||||||||||||||
Sbjct: 715 gtggagcaagtagag 729
>At3g45940.F
Length = 2607
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 169 tggtgcaccaatcgc 183
|||||||||||||||
Sbjct: 1851 tggtgcaccaatcgc 1865
>At3g30470.F
Length = 426
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 88 ggtcaaggatgtggt 102
|||||||||||||||
Sbjct: 223 ggtcaaggatgtggt 237
>At3g11160.F
Length = 558
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gtcaaggatgtggtc 103
|||||||||||||||
Sbjct: 381 gtcaaggatgtggtc 395
>At1g79960.F
Length = 885
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 ggaagagctactctt 73
|||||||||||||||
Sbjct: 690 ggaagagctactctt 704
>At1g78980.F
Length = 2082
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 268 tgggcgacaccacaa 282
|||||||||||||||
Sbjct: 1828 tgggcgacaccacaa 1842
>At1g64840.F
Length = 1152
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 ccggaagagctactc 71
|||||||||||||||
Sbjct: 22 ccggaagagctactc 36
>At1g62120.F
Length = 1314
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 119 ctttgtcagaatgtt 133
|||||||||||||||
Sbjct: 879 ctttgtcagaatgtt 865
>At1g27490.F
Length = 495
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 aaatccaccggaaga 64
|||||||||||||||
Sbjct: 26 aaatccaccggaaga 12
>At1g18750.F
Length = 1215
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 56 accggaagagctact 70
|||||||||||||||
Sbjct: 151 accggaagagctact 165
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)