BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_01845
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.7439.C1 nseq=10 595 e-170
PTA.sd.357.C1 nseq=6 32 2.2
PTA.sd.17855.C1 nseq=5 32 2.2
PTA.sd.11729.C1 nseq=2 32 2.2
At2g43990.F 32 2.2
At1g23540.F 32 2.2
At5g44900.F PTA.sd.16401.singlet 30 8.7
At4g21730.F PTA.sd.12363.singlet 30 8.7
PTA.sd.7886.C1 nseq=2 30 8.7
PTA.sd.5669.C1 nseq=11 30 8.7
PTA.sd.5661.C1 nseq=4 30 8.7
PTA.sd.5051.C1 nseq=13 30 8.7
PTA.sd.3940.C1 nseq=13 30 8.7
PTA.sd.2687.C1 nseq=2 30 8.7
PTA.sd.2491.C1 nseq=22 30 8.7
>PTA.sd.7439.C1 nseq=10
Length = 1431
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 gtaagccaatcgctcaagtacctcacaaagtcatatctcggatacaagatccagtgcggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 gtaagccaatcgctcaagtacctcacaaagtcatatctcggatacaagatccagtgcggg 1025
Query: 61 aagcacgaggtttacgaggactgtgtatctgcgatgagactgtacaagagaatgcgggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 aagcacgaggtttacgaggactgtgtatctgcgatgagactgtacaagagaatgcgggat 1085
Query: 121 caagagcatgtttgtagtggaaaggcagaagggaatggtctgaactcgcggaaacagagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 caagagcatgtttgtagtggaaaggcagaagggaatggtctgaactcgcggaaacagagc 1145
Query: 181 gatctagagaagatgaatgcggaagagctgtaccaaaaatcaacgtcagagtaccggtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 gatctagagaagatgaatgcggaagagctgtaccaaaaatcaacgtcagagtaccggtgc 1205
Query: 241 tggtgccttgaccgactcagcaatccatgaaatgaaatcccaatttctcttttaaaagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206 tggtgccttgaccgactcagcaatccatgaaatgaaatcccaatttctcttttaaaagaa 1265
>PTA.sd.357.C1 nseq=6
Length = 2381
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 118 gatcaagagcatgttt 133
||||||||||||||||
Sbjct: 2249 gatcaagagcatgttt 2234
>PTA.sd.17855.C1 nseq=5
Length = 1753
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 185 tagagaagatgaatgc 200
||||||||||||||||
Sbjct: 924 tagagaagatgaatgc 939
>PTA.sd.11729.C1 nseq=2
Length = 2443
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 271 aatgaaatcccaattt 286
||||||||||||||||
Sbjct: 2304 aatgaaatcccaattt 2319
>At2g43990.F
Length = 1899
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 268 tgaaatgaaatcccaa 283
||||||||||||||||
Sbjct: 1716 tgaaatgaaatcccaa 1731
>At1g23540.F
Length = 2196
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 277 atcccaatttctcttttaaa 296
|||||||||||||| |||||
Sbjct: 857 atcccaatttctctgttaaa 876
>At5g44900.F PTA.sd.16401.singlet
Length = 825
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 285 ttctcttttaaaaga 299
|||||||||||||||
Sbjct: 134 ttctcttttaaaaga 120
>At4g21730.F PTA.sd.12363.singlet
Length = 303
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 261 caatccatgaaatga 275
|||||||||||||||
Sbjct: 275 caatccatgaaatga 261
>PTA.sd.7886.C1 nseq=2
Length = 2222
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 97 agactgtacaagaga 111
|||||||||||||||
Sbjct: 728 agactgtacaagaga 714
>PTA.sd.5669.C1 nseq=11
Length = 1477
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 171 gaaacagagcgatctagag 189
||||||||||||| |||||
Sbjct: 239 gaaacagagcgatatagag 221
>PTA.sd.5661.C1 nseq=4
Length = 751
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 29 agtcatatctcggat 43
|||||||||||||||
Sbjct: 455 agtcatatctcggat 441
>PTA.sd.5051.C1 nseq=13
Length = 969
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 284 tttctcttttaaaag 298
|||||||||||||||
Sbjct: 45 tttctcttttaaaag 59
>PTA.sd.3940.C1 nseq=13
Length = 5086
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 278 tcccaatttctcttt 292
|||||||||||||||
Sbjct: 825 tcccaatttctcttt 811
>PTA.sd.2687.C1 nseq=2
Length = 2163
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 93 gatgagactgtacaa 107
|||||||||||||||
Sbjct: 2141 gatgagactgtacaa 2155
>PTA.sd.2491.C1 nseq=22
Length = 1416
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 231 gtaccggtgctggtg 245
|||||||||||||||
Sbjct: 967 gtaccggtgctggtg 953
>PTA.sd.2321.C1 nseq=34
Length = 1638
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 aatgcgggatcaaga 125
|||||||||||||||
Sbjct: 1064 aatgcgggatcaaga 1078
>PTA.sd.2319.C1 nseq=6
Length = 2894
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 aatgcgggatcaaga 125
|||||||||||||||
Sbjct: 1055 aatgcgggatcaaga 1069
>PTA.sd.2291.C1 nseq=12
Length = 2535
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 195 gaatgcggaagagct 209
|||||||||||||||
Sbjct: 1767 gaatgcggaagagct 1781
>PTA.sd.17889.C1 nseq=13
Length = 975
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 agcacgaggtttacg 76
|||||||||||||||
Sbjct: 59 agcacgaggtttacg 73
>PTA.sd.17238.C1 nseq=2
Length = 938
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 115 cgggatcaagagcat 129
|||||||||||||||
Sbjct: 806 cgggatcaagagcat 792
>PTA.sd.14578.C1 nseq=8
Length = 918
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 agcacgaggtttacg 76
|||||||||||||||
Sbjct: 41 agcacgaggtttacg 55
>PTA.sd.13203.C1 nseq=7
Length = 2068
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 124 gagcatgtttgtagt 138
|||||||||||||||
Sbjct: 450 gagcatgtttgtagt 436
>PTA.sd.12570.C2 nseq=4
Length = 644
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 gatctagagaagatg 195
|||||||||||||||
Sbjct: 158 gatctagagaagatg 172
>PTA.sd.12569.C1 nseq=7
Length = 1270
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 gatctagagaagatg 195
|||||||||||||||
Sbjct: 768 gatctagagaagatg 782
>PTA.sd.11588.C1 nseq=3
Length = 3453
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 gaaaggcagaaggga 154
|||||||||||||||
Sbjct: 1745 gaaaggcagaaggga 1731
>PTA.sd.11153.C1 nseq=22
Length = 1859
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 188 agaagatgaatgcgg 202
|||||||||||||||
Sbjct: 1315 agaagatgaatgcgg 1329
>PTA.sd.10285.C1 nseq=7
Length = 1533
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 237 gtgctggtgccttga 251
|||||||||||||||
Sbjct: 67 gtgctggtgccttga 81
>At5g40310.F
Length = 1047
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 72 ttacgaggactgtgt 86
|||||||||||||||
Sbjct: 837 ttacgaggactgtgt 851
>At5g25430.F
Length = 1926
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 64 cacgaggtttacgag 78
|||||||||||||||
Sbjct: 360 cacgaggtttacgag 374
>At3g42080.F
Length = 486
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 gatctagagaagatg 195
|||||||||||||||
Sbjct: 10 gatctagagaagatg 24
>At3g25610.F
Length = 3609
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 gatacaagatccagt 55
|||||||||||||||
Sbjct: 1727 gatacaagatccagt 1713
>At3g13210.F
Length = 1974
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 171 gaaacagagcgatctagag 189
|||||||||||| ||||||
Sbjct: 1384 gaaacagagcgaactagag 1402
>At2g07020.F
Length = 1863
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 101 tgtacaagagaatgc 115
|||||||||||||||
Sbjct: 333 tgtacaagagaatgc 347
>At1g37070.F
Length = 1773
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 gatctagagaagatg 195
|||||||||||||||
Sbjct: 1474 gatctagagaagatg 1488
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)