BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_01821
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.7097.C1 nseq=65 595 e-170
PTA.sd.1993.C1 nseq=4 38 0.036
PTA.sd.16700.C1 nseq=8 38 0.036
At1g49940.F PTA.sd.2679.singlet 36 0.14
PTA.sd.17191.C1 nseq=2 34 0.56
PTA.sd.1619.C1 nseq=7 34 0.56
PTA.sd.12425.C1 nseq=5 34 0.56
At3g19090.F 34 0.56
PTA.sd.9810.C1 nseq=5 32 2.2
PTA.sd.82.C1 nseq=4 32 2.2
PTA.sd.5857.C1 nseq=16 32 2.2
PTA.sd.4364.C1 nseq=13 32 2.2
PTA.sd.3670.C1 nseq=2 32 2.2
PTA.sd.16461.C1 nseq=2 32 2.2
PTA.sd.1507.C1 nseq=8 32 2.2
>PTA.sd.7097.C1 nseq=65
Length = 2144
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 cgggaaattggaggagcggtcttaaagtccggttgatgctaaagcatcagacgaaggaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1288 cgggaaattggaggagcggtcttaaagtccggttgatgctaaagcatcagacgaaggaac 1347
Query: 61 caaaacaaggtcaagggcgaggaagaaaaggacatgatgcagatgtagaacatgaggaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1348 caaaacaaggtcaagggcgaggaagaaaaggacatgatgcagatgtagaacatgaggaag 1407
Query: 121 atgatgctacaacatccgagcagcagccgattgagaaacaatctgatgactgttctgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1408 atgatgctacaacatccgagcagcagccgattgagaaacaatctgatgactgttctgggg 1467
Query: 181 aatgggatacacatatgcaagagcagccaataggagaggatcaagggaatgagaaagcgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1468 aatgggatacacatatgcaagagcagccaataggagaggatcaagggaatgagaaagcgg 1527
Query: 241 ctgggcagagaaaagggcgtaacagaggtagaggaaagggacgaggacgagggcaaccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1528 ctgggcagagaaaagggcgtaacagaggtagaggaaagggacgaggacgagggcaaccac 1587
>PTA.sd.1993.C1 nseq=4
Length = 1578
Score = 38.2 bits (19), Expect = 0.036
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 112 atgaggaagatgatgctac 130
|||||||||||||||||||
Sbjct: 403 atgaggaagatgatgctac 421
>PTA.sd.16700.C1 nseq=8
Length = 4726
Score = 38.2 bits (19), Expect = 0.036
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 166 atgactgttctggggaatg 184
|||||||||||||||||||
Sbjct: 2344 atgactgttctggggaatg 2362
>At1g49940.F PTA.sd.2679.singlet
Length = 693
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 279 ggacgaggacgagggcaa 296
||||||||||||||||||
Sbjct: 288 ggacgaggacgagggcaa 305
>PTA.sd.17191.C1 nseq=2
Length = 604
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 113 tgaggaagatgatgcta 129
|||||||||||||||||
Sbjct: 553 tgaggaagatgatgcta 569
>PTA.sd.1619.C1 nseq=7
Length = 1591
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 112 atgaggaagatgatgct 128
|||||||||||||||||
Sbjct: 1427 atgaggaagatgatgct 1411
>PTA.sd.12425.C1 nseq=5
Length = 792
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 271 gaggaaagggacgagga 287
|||||||||||||||||
Sbjct: 256 gaggaaagggacgagga 240
>At3g19090.F
Length = 1368
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 270 agaggaaagggacgaggacga 290
|||||||| ||||||||||||
Sbjct: 1144 agaggaaaaggacgaggacga 1164
>PTA.sd.9810.C1 nseq=5
Length = 1612
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 109 aacatgaggaagatga 124
||||||||||||||||
Sbjct: 89 aacatgaggaagatga 74
>PTA.sd.82.C1 nseq=4
Length = 2160
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 172 gttctggggaatggga 187
||||||||||||||||
Sbjct: 271 gttctggggaatggga 256
>PTA.sd.5857.C1 nseq=16
Length = 2645
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 222 caagggaatgagaaag 237
||||||||||||||||
Sbjct: 592 caagggaatgagaaag 607
>PTA.sd.4364.C1 nseq=13
Length = 2096
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 84 agaaaaggacatgatg 99
||||||||||||||||
Sbjct: 1997 agaaaaggacatgatg 1982
>PTA.sd.3670.C1 nseq=2
Length = 2631
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 157 aacaatctgatgactg 172
||||||||||||||||
Sbjct: 1313 aacaatctgatgactg 1298
>PTA.sd.16461.C1 nseq=2
Length = 1322
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 80 aggaagaaaaggacat 95
||||||||||||||||
Sbjct: 1112 aggaagaaaaggacat 1127
>PTA.sd.1507.C1 nseq=8
Length = 1708
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 39 ctaaagcatcagacga 54
||||||||||||||||
Sbjct: 681 ctaaagcatcagacga 696
>PTA.sd.13352.C1 nseq=2
Length = 774
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 109 aacatgaggaagatga 124
||||||||||||||||
Sbjct: 542 aacatgaggaagatga 557
>At3g23960.F
Length = 1209
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 147 ccgattgagaaacaat 162
||||||||||||||||
Sbjct: 547 ccgattgagaaacaat 562
>At2g21460.F
Length = 4002
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 88 aaggacatgatgcaga 103
||||||||||||||||
Sbjct: 2107 aaggacatgatgcaga 2122
>At2g02650.F
Length = 1098
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 35 gatgctaaagcatcag 50
||||||||||||||||
Sbjct: 1007 gatgctaaagcatcag 992
>At4g35010.F PTA.sd.13458.singlet
Length = 2496
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 151 ttgagaaacaatctg 165
|||||||||||||||
Sbjct: 1236 ttgagaaacaatctg 1222
>PTA.sd.9427.C1 nseq=3
Length = 1280
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 tctgatgactgttct 176
|||||||||||||||
Sbjct: 597 tctgatgactgttct 583
>PTA.sd.9208.C1 nseq=78
Length = 1850
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 110 acatgaggaagatga 124
|||||||||||||||
Sbjct: 1047 acatgaggaagatga 1061
>PTA.sd.8943.C1 nseq=5
Length = 3176
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 aggacatgatgcaga 103
|||||||||||||||
Sbjct: 1199 aggacatgatgcaga 1213
>PTA.sd.8771.C1 nseq=8
Length = 1943
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 tgctaaagcatcaga 51
|||||||||||||||
Sbjct: 868 tgctaaagcatcaga 882
>PTA.sd.8592.C1 nseq=3
Length = 1528
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 73 aagggcgaggaagaa 87
|||||||||||||||
Sbjct: 1303 aagggcgaggaagaa 1317
>PTA.sd.8041.C1 nseq=5
Length = 1270
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 cgaggaagaaaagga 92
|||||||||||||||
Sbjct: 49 cgaggaagaaaagga 35
>PTA.sd.8015.C1 nseq=11
Length = 1706
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 32 gttgatgctaaagcatcag 50
||||||| |||||||||||
Sbjct: 298 gttgatgttaaagcatcag 316
>PTA.sd.7994.C1 nseq=2
Length = 3084
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 77 gcgaggaagaaaagg 91
|||||||||||||||
Sbjct: 677 gcgaggaagaaaagg 691
>PTA.sd.7878.C1 nseq=4
Length = 5223
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 tgaggaagatgatgc 127
|||||||||||||||
Sbjct: 4701 tgaggaagatgatgc 4687
>PTA.sd.7818.C1 nseq=12
Length = 746
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 aggagaggatcaagg 226
|||||||||||||||
Sbjct: 215 aggagaggatcaagg 229
>PTA.sd.7456.C1 nseq=2
Length = 2142
Score = 30.2 bits (15), Expect = 8.7
Identities = 27/31 (87%)
Strand = Plus / Plus
Query: 94 atgatgcagatgtagaacatgaggaagatga 124
|||||| ||||| |||| | |||||||||||
Sbjct: 797 atgatgaagatgaagaagaggaggaagatga 827
>PTA.sd.6370.C1 nseq=4
Length = 1889
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 96 gatgcagatgtagaa 110
|||||||||||||||
Sbjct: 1530 gatgcagatgtagaa 1544
>PTA.sd.5746.C1 nseq=15
Length = 3230
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 242 tgggcagagaaaagg 256
|||||||||||||||
Sbjct: 1182 tgggcagagaaaagg 1196
>PTA.sd.5612.C1 nseq=11
Length = 1152
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 268 gtagaggaaagggac 282
|||||||||||||||
Sbjct: 11 gtagaggaaagggac 25
>PTA.sd.5129.C1 nseq=3
Length = 906
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 107 agaacatgaggaaga 121
|||||||||||||||
Sbjct: 396 agaacatgaggaaga 410
>PTA.sd.5015.C1 nseq=3
Length = 744
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 atgaggaagatgatg 126
|||||||||||||||
Sbjct: 499 atgaggaagatgatg 513
>PTA.sd.4252.C1 nseq=6
Length = 919
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 96 gatgcagatgtagaa 110
|||||||||||||||
Sbjct: 506 gatgcagatgtagaa 492
>PTA.sd.4092.C1 nseq=31
Length = 2108
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 112 atgaggaagatgatg 126
|||||||||||||||
Sbjct: 250 atgaggaagatgatg 236
>PTA.sd.4090.C1 nseq=6
Length = 1525
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 160 aatctgatgactgtt 174
|||||||||||||||
Sbjct: 554 aatctgatgactgtt 568
>PTA.sd.4088.C1 nseq=2
Length = 1010
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 160 aatctgatgactgtt 174
|||||||||||||||
Sbjct: 514 aatctgatgactgtt 528
>PTA.sd.4070.C1 nseq=5
Length = 1440
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 272 aggaaagggacgagg 286
|||||||||||||||
Sbjct: 488 aggaaagggacgagg 502
>PTA.sd.3476.C1 nseq=2
Length = 3720
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 tgaggaagatgatgc 127
|||||||||||||||
Sbjct: 405 tgaggaagatgatgc 419
>PTA.sd.2783.C1 nseq=33
Length = 1913
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 gtagaacatgaggaa 119
|||||||||||||||
Sbjct: 904 gtagaacatgaggaa 918
>PTA.sd.2342.C1 nseq=2
Length = 1140
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 36 atgctaaagcatcag 50
|||||||||||||||
Sbjct: 67 atgctaaagcatcag 53
>PTA.sd.1790.C1 nseq=6
Length = 637
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 286 gacgagggcaaccac 300
|||||||||||||||
Sbjct: 110 gacgagggcaaccac 96
>PTA.sd.17585.C1 nseq=7
Length = 1341
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 228 aatgagaaagcggct 242
|||||||||||||||
Sbjct: 755 aatgagaaagcggct 769
>PTA.sd.17497.C1 nseq=2
Length = 1974
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 146 gccgattgagaaaca 160
|||||||||||||||
Sbjct: 1623 gccgattgagaaaca 1637
>PTA.sd.17354.C1 nseq=13
Length = 2165
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 atgaggaagatgatg 126
|||||||||||||||
Sbjct: 1511 atgaggaagatgatg 1525
>PTA.sd.16619.C1 nseq=2
Length = 2416
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 35 gatgctaaagcatca 49
|||||||||||||||
Sbjct: 1436 gatgctaaagcatca 1422
>PTA.sd.16019.C1 nseq=11
Length = 1300
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 73 aagggcgaggaagaaaagg 91
|||||||||||| ||||||
Sbjct: 775 aagggcgaggaacaaaagg 757
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)