BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_01751
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.14660.C1 nseq=62 595 e-170
At3g43130.F 34 0.56
At1g63040.F 34 0.56
At3g62930.F PTA.sd.11007.singlet 32 2.2
PTA.sd.48.C1 nseq=2 32 2.2
PTA.sd.2877.C1 nseq=2 32 2.2
PTA.sd.14985.C1 nseq=11 32 2.2
PTA.sd.13272.C1 nseq=4 32 2.2
At5g60970.F 32 2.2
At3g58330.F 32 2.2
At2g17060.F 32 2.2
At4g16860.F PTA.sd.12029.singlet 30 8.7
PTA.sd.9388.C1 nseq=2 30 8.7
PTA.sd.7453.C1 nseq=57 30 8.7
PTA.sd.5225.C1 nseq=2 30 8.7
>PTA.sd.14660.C1 nseq=62
Length = 1068
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 atgcataccggtgctgctcgctacgatctcgatcgattcggtatcatcttcaggcctagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atgcataccggtgctgctcgctacgatctcgatcgattcggtatcatcttcaggcctagt 426
Query: 61 cctcgccagtctgattgtatgattgtcgccggtactcttaccaataagatggctccggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cctcgccagtctgattgtatgattgtcgccggtactcttaccaataagatggctccggct 486
Query: 121 cttcgcaaggtttatgaccagatgcctgagccaaggtgggtgatttcaatgggaagttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cttcgcaaggtttatgaccagatgcctgagccaaggtgggtgatttcaatgggaagttgt 546
Query: 181 gccaatggaggtggatactatcactactcctactcggtggttcgaggatgtgacagaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gccaatggaggtggatactatcactactcctactcggtggttcgaggatgtgacagaatt 606
Query: 241 gtcccagtcgacatatacgtcccggggtgcccaccaaccgctgaggctttgctctatgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gtcccagtcgacatatacgtcccggggtgcccaccaaccgctgaggctttgctctatgga 666
>At3g43130.F
Length = 1023
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 173 gaagttgtgccaatgga 189
|||||||||||||||||
Sbjct: 730 gaagttgtgccaatgga 746
>At1g63040.F
Length = 747
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 194 gatactatcactactcctact 214
||||||||||||||| |||||
Sbjct: 142 gatactatcactactactact 162
>At3g62930.F PTA.sd.11007.singlet
Length = 309
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 109 atggctccggctcttc 124
||||||||||||||||
Sbjct: 299 atggctccggctcttc 284
>PTA.sd.48.C1 nseq=2
Length = 2336
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 140 agatgcctgagccaag 155
||||||||||||||||
Sbjct: 1030 agatgcctgagccaag 1045
>PTA.sd.2877.C1 nseq=2
Length = 3486
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 160 gtgatttcaatgggaa 175
||||||||||||||||
Sbjct: 2398 gtgatttcaatgggaa 2413
>PTA.sd.14985.C1 nseq=11
Length = 1762
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 160 gtgatttcaatgggaa 175
||||||||||||||||
Sbjct: 451 gtgatttcaatgggaa 436
>PTA.sd.13272.C1 nseq=4
Length = 600
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 6 taccggtgctgctcgctacg 25
||||||||||||| ||||||
Sbjct: 499 taccggtgctgctagctacg 480
>At5g60970.F
Length = 1083
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 37 ttcggtatcatcttca 52
||||||||||||||||
Sbjct: 111 ttcggtatcatcttca 126
>At3g58330.F
Length = 522
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 238 attgtcccagtcgaca 253
||||||||||||||||
Sbjct: 240 attgtcccagtcgaca 255
>At2g17060.F
Length = 3333
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 169 atgggaagttgtgcca 184
||||||||||||||||
Sbjct: 1043 atgggaagttgtgcca 1028
>At4g16860.F PTA.sd.12029.singlet
Length = 3771
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 ggtactcttaccaat 105
|||||||||||||||
Sbjct: 666 ggtactcttaccaat 652
>PTA.sd.9388.C1 nseq=2
Length = 2561
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 35 gattcggtatcatcttcag 53
||||| |||||||||||||
Sbjct: 713 gattcagtatcatcttcag 695
>PTA.sd.7453.C1 nseq=57
Length = 1949
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 193 ggatactatcactactcct 211
|||| ||||||||||||||
Sbjct: 644 ggatgctatcactactcct 662
>PTA.sd.5225.C1 nseq=2
Length = 1209
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 283 gaggctttgctctat 297
|||||||||||||||
Sbjct: 816 gaggctttgctctat 802
>PTA.sd.3585.C1 nseq=17
Length = 1571
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 ggtactcttaccaat 105
|||||||||||||||
Sbjct: 780 ggtactcttaccaat 766
>PTA.sd.3409.C1 nseq=3
Length = 3414
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 ggtactcttaccaat 105
|||||||||||||||
Sbjct: 702 ggtactcttaccaat 688
>PTA.sd.3325.C1 nseq=2
Length = 2652
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 196 tactatcactactcctact 214
||||||||||||| |||||
Sbjct: 136 tactatcactactactact 118
>PTA.sd.3091.C1 nseq=3
Length = 3119
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 ggtactcttaccaat 105
|||||||||||||||
Sbjct: 761 ggtactcttaccaat 747
>PTA.sd.2690.C1 nseq=5
Length = 3095
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 tccggctcttcgcaa 128
|||||||||||||||
Sbjct: 736 tccggctcttcgcaa 750
>PTA.sd.2656.C1 nseq=3
Length = 2692
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 271 ccaccaaccgctgag 285
|||||||||||||||
Sbjct: 1090 ccaccaaccgctgag 1104
>PTA.sd.2559.C1 nseq=7
Length = 1310
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 24 cgatctcgatcgatt 38
|||||||||||||||
Sbjct: 337 cgatctcgatcgatt 351
>PTA.sd.17818.C1 nseq=4
Length = 4225
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 150 gccaaggtgggtgat 164
|||||||||||||||
Sbjct: 3450 gccaaggtgggtgat 3436
>PTA.sd.1507.C1 nseq=8
Length = 1708
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 tgcataccggtgctg 16
|||||||||||||||
Sbjct: 153 tgcataccggtgctg 167
>PTA.sd.14892.C1 nseq=7
Length = 1631
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 284 aggctttgctctatg 298
|||||||||||||||
Sbjct: 837 aggctttgctctatg 823
>PTA.sd.13130.C1 nseq=2
Length = 2579
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 148 gagccaaggtgggtgattt 166
|||||||||||| ||||||
Sbjct: 1675 gagccaaggtggctgattt 1693
>PTA.sd.13129.C1 nseq=3
Length = 2412
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 148 gagccaaggtgggtgattt 166
|||||||||||| ||||||
Sbjct: 1799 gagccaaggtggctgattt 1817
>PTA.sd.12034.C1 nseq=4
Length = 4082
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 ggtactcttaccaat 105
|||||||||||||||
Sbjct: 800 ggtactcttaccaat 786
>PTA.sd.12033.C1 nseq=3
Length = 4222
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 ggtactcttaccaat 105
|||||||||||||||
Sbjct: 654 ggtactcttaccaat 640
>PTA.sd.12032.C1 nseq=2
Length = 3219
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 ggtactcttaccaat 105
|||||||||||||||
Sbjct: 660 ggtactcttaccaat 646
>PTA.sd.12031.C1 nseq=2
Length = 3906
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 ggtactcttaccaat 105
|||||||||||||||
Sbjct: 660 ggtactcttaccaat 646
>PTA.sd.10497.C1 nseq=10
Length = 957
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 229 tgtgacagaattgtc 243
|||||||||||||||
Sbjct: 247 tgtgacagaattgtc 233
>PTA.sd.10194.C1 nseq=9
Length = 2232
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 34 cgattcggtatcatc 48
|||||||||||||||
Sbjct: 42 cgattcggtatcatc 56
>At5g66960.F
Length = 2379
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 284 aggctttgctctatg 298
|||||||||||||||
Sbjct: 722 aggctttgctctatg 736
>At5g28470.F
Length = 1686
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 75 ttgtatgattgtcgc 89
|||||||||||||||
Sbjct: 1257 ttgtatgattgtcgc 1271
>At4g16930.F
Length = 465
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 ggtactcttaccaat 105
|||||||||||||||
Sbjct: 348 ggtactcttaccaat 334
>At4g14810.F
Length = 261
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 actcggtggttcgag 226
|||||||||||||||
Sbjct: 119 actcggtggttcgag 133
>At3g51540.F
Length = 1317
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 281 ctgaggctttgctct 295
|||||||||||||||
Sbjct: 615 ctgaggctttgctct 601
>At3g06630.F
Length = 2016
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 176 gttgtgccaatggag 190
|||||||||||||||
Sbjct: 383 gttgtgccaatggag 397
>At2g30370.F
Length = 390
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 22 tacgatctcgatcga 36
|||||||||||||||
Sbjct: 337 tacgatctcgatcga 351
>At2g21890.F
Length = 1128
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 ctactcctactcggt 218
|||||||||||||||
Sbjct: 271 ctactcctactcggt 257
>At2g21730.F
Length = 1131
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 ctactcctactcggt 218
|||||||||||||||
Sbjct: 271 ctactcctactcggt 257
>At1g56540.F
Length = 3291
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 ggtactcttaccaat 105
|||||||||||||||
Sbjct: 672 ggtactcttaccaat 658
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)