BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_01727
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.17003.C1 nseq=11 595 e-170
PTA.sd.12850.C1 nseq=9 270 5e-72
PTA.sd.7513.C1 nseq=9 34 0.56
At5g55520.F 34 0.56
PTA.sd.856.C1 nseq=2 32 2.2
PTA.sd.5848.C1 nseq=11 32 2.2
PTA.sd.367.C1 nseq=8 32 2.2
PTA.sd.17642.C1 nseq=2 32 2.2
PTA.sd.10344.C1 nseq=6 32 2.2
At5g52170.F 32 2.2
At2g26950.F 32 2.2
At1g20740.F 32 2.2
At1g09510.F 32 2.2
At4g16650.F PTA.sd.12012.singlet 30 8.7
PTA.sd.9314.C1 nseq=22 30 8.7
>PTA.sd.17003.C1 nseq=11
Length = 1287
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 atcttcttggagctttcaagccagcatgtaatatttcaatcacatttactgatgggaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 atcttcttggagctttcaagccagcatgtaatatttcaatcacatttactgatgggaaaa 204
Query: 61 accgtaaacaggtacccactaagaaagataatggacaaatagttatgaatccacttttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 accgtaaacaggtacccactaagaaagataatggacaaatagttatgaatccacttttcc 264
Query: 121 agagtcaagaaactattgctgggaagattaacattgaaccatatcaagggaaaaaagtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagtcaagaaactattgctgggaagattaacattgaaccatatcaagggaaaaaagtgg 324
Query: 181 agcataatggtgtaaaagttgagcttcttggtcaaatagaaatgtactttgacagaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcataatggtgtaaaagttgagcttcttggtcaaatagaaatgtactttgacagaggaa 384
Query: 241 acttttatgacttcacttccttggtgcgtgagattgatgtacctggagaaatatatgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acttttatgacttcacttccttggtgcgtgagattgatgtacctggagaaatatatgaaa 444
>PTA.sd.12850.C1 nseq=9
Length = 1187
Score = 270 bits (136), Expect = 5e-72
Identities = 259/300 (86%)
Strand = Plus / Plus
Query: 1 atcttcttggagctttcaagccagcatgtaatatttcaatcacatttactgatgggaaaa 60
||||||||||||| |||||||| || || || || || ||||| ||| ||||||| ||||
Sbjct: 137 atcttcttggagccttcaagcccgcctgcaacatctccatcactttttctgatggcaaaa 196
Query: 61 accgtaaacaggtacccactaagaaagataatggacaaatagttatgaatccacttttcc 120
| ||||||||||| |||| |||||||| ||||| || | | | || || || ||||
Sbjct: 197 atcgtaaacaggttcccatgaagaaagaaaatggtcagacggctctggtgcctctgttcc 256
Query: 121 agagtcaagaaactattgctgggaagattaacattgaaccatatcaagggaaaaaagtgg 180
| |||||||| |||||| | |||||| || |||||||||||||||||||||||| ||||
Sbjct: 257 atagtcaagacactatttccgggaaggtttgcattgaaccatatcaagggaaaaaggtgg 316
Query: 181 agcataatggtgtaaaagttgagcttcttggtcaaatagaaatgtactttgacagaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agcataatggtgtaaaagttgagcttcttggtcaaatagaaatgtactttgacagaggaa 376
Query: 241 acttttatgacttcacttccttggtgcgtgagattgatgtacctggagaaatatatgaaa 300
|||| ||||| |||||||||||||| ||||| | |||||||||||||||||||| ||||
Sbjct: 377 acttctatgatttcacttccttggttcgtgaactggatgtacctggagaaatatacgaaa 436
>PTA.sd.7513.C1 nseq=9
Length = 2593
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 231 gacagaggaaactttta 247
|||||||||||||||||
Sbjct: 1656 gacagaggaaactttta 1672
>At5g55520.F
Length = 2409
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 199 ttgagcttcttggtcaa 215
|||||||||||||||||
Sbjct: 1191 ttgagcttcttggtcaa 1175
>PTA.sd.856.C1 nseq=2
Length = 2641
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 181 agcataatggtgtaaa 196
||||||||||||||||
Sbjct: 38 agcataatggtgtaaa 53
>PTA.sd.5848.C1 nseq=11
Length = 3058
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 65 taaacaggtacccact 80
||||||||||||||||
Sbjct: 1418 taaacaggtacccact 1403
>PTA.sd.367.C1 nseq=8
Length = 735
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 223 tgtactttgacagagg 238
||||||||||||||||
Sbjct: 192 tgtactttgacagagg 207
>PTA.sd.17642.C1 nseq=2
Length = 3557
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 163 atcaagggaaaaaagt 178
||||||||||||||||
Sbjct: 469 atcaagggaaaaaagt 484
>PTA.sd.10344.C1 nseq=6
Length = 1378
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 247 atgacttcacttcctt 262
||||||||||||||||
Sbjct: 1191 atgacttcacttcctt 1176
>At5g52170.F
Length = 2049
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 192 gtaaaagttgagcttc 207
||||||||||||||||
Sbjct: 1377 gtaaaagttgagcttc 1362
>At2g26950.F
Length = 1128
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 187 atggtgtaaaagttga 202
||||||||||||||||
Sbjct: 392 atggtgtaaaagttga 407
>At1g20740.F
Length = 801
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 254 cacttccttggtgcgt 269
||||||||||||||||
Sbjct: 726 cacttccttggtgcgt 711
>At1g09510.F
Length = 978
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 37 caatcacatttactga 52
||||||||||||||||
Sbjct: 637 caatcacatttactga 622
>At4g16650.F PTA.sd.12012.singlet
Length = 2739
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 283 ctggagaaatatatg 297
|||||||||||||||
Sbjct: 794 ctggagaaatatatg 808
>PTA.sd.9314.C1 nseq=22
Length = 1690
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 33 atttcaatcacattt 47
|||||||||||||||
Sbjct: 1421 atttcaatcacattt 1407
>PTA.sd.8121.C1 nseq=10
Length = 1550
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 124 gtcaagaaactattg 138
|||||||||||||||
Sbjct: 337 gtcaagaaactattg 323
>PTA.sd.7875.C1 nseq=7
Length = 3032
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 286 gagaaatatatgaaa 300
|||||||||||||||
Sbjct: 1865 gagaaatatatgaaa 1879
>PTA.sd.6539.C1 nseq=87
Length = 1682
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 203 gcttcttggtcaaat 217
|||||||||||||||
Sbjct: 497 gcttcttggtcaaat 483
>PTA.sd.5421.C1 nseq=5
Length = 1028
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 116 tttccagagtcaaga 130
|||||||||||||||
Sbjct: 171 tttccagagtcaaga 157
>PTA.sd.5023.C1 nseq=8
Length = 5965
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 50 tgatgggaaaaaccgtaaa 68
|||||||||||| ||||||
Sbjct: 1549 tgatgggaaaaatcgtaaa 1567
>PTA.sd.5020.C1 nseq=9
Length = 1444
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 126 caagaaactattgct 140
|||||||||||||||
Sbjct: 1357 caagaaactattgct 1343
>PTA.sd.442.C1 nseq=7
Length = 506
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 aagataatggacaaa 99
|||||||||||||||
Sbjct: 34 aagataatggacaaa 48
>PTA.sd.4284.C1 nseq=8
Length = 2151
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 214 aaatagaaatgtactttga 232
||||| |||||||||||||
Sbjct: 2146 aaataaaaatgtactttga 2128
>PTA.sd.4010.C1 nseq=3
Length = 1878
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 tcttcttggagcttt 16
|||||||||||||||
Sbjct: 321 tcttcttggagcttt 335
>PTA.sd.3895.C1 nseq=8
Length = 1447
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 105 atgaatccacttttc 119
|||||||||||||||
Sbjct: 858 atgaatccacttttc 844
>PTA.sd.359.C1 nseq=4
Length = 3637
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 atttcaatcacattt 47
|||||||||||||||
Sbjct: 2212 atttcaatcacattt 2226
>PTA.sd.2441.C1 nseq=7
Length = 1127
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 6 cttggagctttcaag 20
|||||||||||||||
Sbjct: 197 cttggagctttcaag 183
>PTA.sd.2406.C2 nseq=2
Length = 1605
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 240 aacttttatgacttc 254
|||||||||||||||
Sbjct: 428 aacttttatgacttc 442
>PTA.sd.18024.C1 nseq=19
Length = 2011
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 tcttcttggagcttt 16
|||||||||||||||
Sbjct: 162 tcttcttggagcttt 176
>PTA.sd.17906.C1 nseq=2
Length = 3911
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 191 tgtaaaagttgagct 205
|||||||||||||||
Sbjct: 1664 tgtaaaagttgagct 1650
>PTA.sd.17603.C1 nseq=44
Length = 3553
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 133 ctattgctgggaaga 147
|||||||||||||||
Sbjct: 1892 ctattgctgggaaga 1906
>PTA.sd.17526.C1 nseq=26
Length = 832
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 23 agcatgtaatatttc 37
|||||||||||||||
Sbjct: 677 agcatgtaatatttc 691
>PTA.sd.17332.C1 nseq=4
Length = 2963
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 144 aagattaacattgaa 158
|||||||||||||||
Sbjct: 591 aagattaacattgaa 605
>PTA.sd.1683.C1 nseq=2
Length = 1269
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 194 aaaagttgagcttct 208
|||||||||||||||
Sbjct: 1062 aaaagttgagcttct 1048
>PTA.sd.16418.C1 nseq=6
Length = 2095
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 249 gacttcacttccttg 263
|||||||||||||||
Sbjct: 1007 gacttcacttccttg 993
>PTA.sd.15540.C1 nseq=5
Length = 1306
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 209 tggtcaaatagaaat 223
|||||||||||||||
Sbjct: 1306 tggtcaaatagaaat 1292
>PTA.sd.15274.C1 nseq=13
Length = 1545
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 aagaaagataatgga 95
|||||||||||||||
Sbjct: 1094 aagaaagataatgga 1108
>PTA.sd.15160.C1 nseq=8
Length = 2739
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 240 aacttttatgacttc 254
|||||||||||||||
Sbjct: 2600 aacttttatgacttc 2614
>PTA.sd.14887.C1 nseq=9
Length = 3854
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 198 gttgagcttcttggt 212
|||||||||||||||
Sbjct: 2605 gttgagcttcttggt 2619
>PTA.sd.13311.C1 nseq=18
Length = 3048
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 280 tacctggagaaatat 294
|||||||||||||||
Sbjct: 2651 tacctggagaaatat 2665
>PTA.sd.11942.C1 nseq=8
Length = 742
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 78 actaagaaagataat 92
|||||||||||||||
Sbjct: 209 actaagaaagataat 223
>PTA.sd.11374.C1 nseq=5
Length = 1708
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 97 aaatagttatgaatc 111
|||||||||||||||
Sbjct: 1652 aaatagttatgaatc 1638
>PTA.sd.11203.C1 nseq=4
Length = 4278
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 15 ttcaagccagcatgt 29
|||||||||||||||
Sbjct: 1495 ttcaagccagcatgt 1481
>PTA.sd.10256.C1 nseq=4
Length = 1691
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 tcttcttggagcttt 16
|||||||||||||||
Sbjct: 1116 tcttcttggagcttt 1102
>At5g52350.F
Length = 1644
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 aagaaactattgctg 141
|||||||||||||||
Sbjct: 992 aagaaactattgctg 1006
>At4g08210.F
Length = 2061
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 197 agttgagcttcttggtcaa 215
|||||| ||||||||||||
Sbjct: 1758 agttgatcttcttggtcaa 1776
>At4g05480.F
Length = 969
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 145 agattaacattgaac 159
|||||||||||||||
Sbjct: 338 agattaacattgaac 352
>At3g62900.F
Length = 4206
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 247 atgacttcacttcct 261
|||||||||||||||
Sbjct: 688 atgacttcacttcct 702
>At3g58350.F
Length = 1068
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 tgacagaggaaactt 244
|||||||||||||||
Sbjct: 596 tgacagaggaaactt 610
>At3g44760.F
Length = 570
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 119 ccagagtcaagaaac 133
|||||||||||||||
Sbjct: 320 ccagagtcaagaaac 306
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)