BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_01657
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.17078.C1 nseq=5 595 e-170
PTA.sd.12806.C1 nseq=5 100 1e-20
PTA.sd.6249.C1 nseq=5 34 0.56
PTA.sd.2448.C1 nseq=9 34 0.56
PTA.sd.15294.C1 nseq=12 34 0.56
At5g51920.F 34 0.56
At1g69320.F 34 0.56
PTA.sd.5923.C1 nseq=3 32 2.2
PTA.sd.1656.C1 nseq=11 32 2.2
PTA.sd.15642.C1 nseq=6 32 2.2
At4g38030.F 32 2.2
At4g37580.F 32 2.2
PTA.sd.9799.C1 nseq=34 30 8.7
PTA.sd.9034.C1 nseq=3 30 8.7
PTA.sd.854.C1 nseq=50 30 8.7
>PTA.sd.17078.C1 nseq=5
Length = 1575
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 gcagacggtaacgagctacttaggttccacggaaccaccgtggcttgtggtttaggtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 gcagacggtaacgagctacttaggttccacggaaccaccgtggcttgtggtttaggtata 1083
Query: 61 aacgggtcaacaagtgtttgcacggcggagaaatgttgtgtctgtcggattatacgaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 aacgggtcaacaagtgtttgcacggcggagaaatgttgtgtctgtcggattatacgaaac 1143
Query: 121 gggttctcgtcgaaacgggagaagaataatggggttggtgttttcacggcgtctactagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 gggttctcgtcgaaacgggagaagaataatggggttggtgttttcacggcgtctactagt 1203
Query: 181 ggaagagcgttcgagtcgattttggttaacggtggagatgagagtggagatgttgatcgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 ggaagagcgttcgagtcgattttggttaacggtggagatgagagtggagatgttgatcgg 1263
Query: 241 acggtgaggaaagtgttgattgtgtgtagggttatcgccggaagagttcatcggccggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 acggtgaggaaagtgttgattgtgtgtagggttatcgccggaagagttcatcggccggtg 1323
>PTA.sd.12806.C1 nseq=5
Length = 1645
Score = 99.6 bits (50), Expect = 1e-20
Identities = 122/146 (83%)
Strand = Plus / Plus
Query: 4 gacggtaacgagctacttaggttccacggaaccaccgtggcttgtggtttaggtataaac 63
||||| |||||||| || ||||| ||||| ||||| |||||||| | ||| || ||||||
Sbjct: 1071 gacggaaacgagcttctcaggtttcacggcaccactgtggcttgcgctttggggataaac 1130
Query: 64 gggtcaacaagtgtttgcacggcggagaaatgttgtgtctgtcggattatacgaaacggg 123
||||| || ||| | || || |||| || ||||| || ||||||||||||||||| |||
Sbjct: 1131 gggtcgacgagtctgtgttcgtcggaaaagtgttgcgtttgtcggattatacgaaatggg 1190
Query: 124 ttctcgtcgaaacgggagaagaataa 149
|||||| |||||||||||| ||||||
Sbjct: 1191 ttctcggcgaaacgggagatgaataa 1216
Score = 44.1 bits (22), Expect = 6e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 255 gttgattgtgtgtagggttatcgccggaagagttcatcggccggtg 300
||||||||||||| | || || ||||| || |||||||||||||||
Sbjct: 1304 gttgattgtgtgtcgagtgattgccgggagggttcatcggccggtg 1349
>PTA.sd.6249.C1 nseq=5
Length = 2691
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 29 acggaaccaccgtggct 45
|||||||||||||||||
Sbjct: 443 acggaaccaccgtggct 459
>PTA.sd.2448.C1 nseq=9
Length = 1401
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 81 cacggcggagaaatgtt 97
|||||||||||||||||
Sbjct: 981 cacggcggagaaatgtt 965
>PTA.sd.15294.C1 nseq=12
Length = 1393
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 209 acggtggagatgagagt 225
|||||||||||||||||
Sbjct: 291 acggtggagatgagagt 307
>At5g51920.F
Length = 1713
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 140 agaagaataatggggtt 156
|||||||||||||||||
Sbjct: 517 agaagaataatggggtt 533
>At1g69320.F
Length = 537
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 229 gatgttgatcggacggt 245
|||||||||||||||||
Sbjct: 33 gatgttgatcggacggt 17
>PTA.sd.5923.C1 nseq=3
Length = 1022
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 285 agttcatcggccggtg 300
||||||||||||||||
Sbjct: 285 agttcatcggccggtg 300
>PTA.sd.1656.C1 nseq=11
Length = 1942
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 76 gtttgcacggcggaga 91
||||||||||||||||
Sbjct: 222 gtttgcacggcggaga 207
>PTA.sd.15642.C1 nseq=6
Length = 1106
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 142 aagaataatggggttg 157
||||||||||||||||
Sbjct: 470 aagaataatggggttg 485
>At4g38030.F
Length = 1950
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 46 tgtggtttaggtataa 61
||||||||||||||||
Sbjct: 1462 tgtggtttaggtataa 1447
>At4g37580.F
Length = 1212
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 195 gtcgattttggttaac 210
||||||||||||||||
Sbjct: 492 gtcgattttggttaac 507
>PTA.sd.9799.C1 nseq=34
Length = 1818
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 243 ggtgaggaaagtgtt 257
|||||||||||||||
Sbjct: 1577 ggtgaggaaagtgtt 1591
>PTA.sd.9034.C1 nseq=3
Length = 2704
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 186 agcgttcgagtcgat 200
|||||||||||||||
Sbjct: 219 agcgttcgagtcgat 233
>PTA.sd.854.C1 nseq=50
Length = 2025
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 203 tggttaacggtggagatga 221
|||||| ||||||||||||
Sbjct: 689 tggttatcggtggagatga 707
>PTA.sd.804.C1 nseq=2
Length = 992
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 208 aacggtggagatgag 222
|||||||||||||||
Sbjct: 439 aacggtggagatgag 453
>PTA.sd.7854.C1 nseq=2
Length = 1114
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 281 gaagagttcatcggc 295
|||||||||||||||
Sbjct: 399 gaagagttcatcggc 385
>PTA.sd.7278.C1 nseq=6
Length = 1276
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 154 gttggtgttttcacg 168
|||||||||||||||
Sbjct: 1084 gttggtgttttcacg 1070
>PTA.sd.6225.C1 nseq=5
Length = 2828
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 225 tggagatgttgatcg 239
|||||||||||||||
Sbjct: 414 tggagatgttgatcg 428
>PTA.sd.5262.C1 nseq=2
Length = 1483
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 215 gagatgagagtggagatgt 233
|||| ||||||||||||||
Sbjct: 271 gagaggagagtggagatgt 253
>PTA.sd.4805.C1 nseq=24
Length = 3282
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 111 tatacgaaacgggtt 125
|||||||||||||||
Sbjct: 36 tatacgaaacgggtt 22
>PTA.sd.456.C1 nseq=12
Length = 1668
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 acggtggagatgaga 223
|||||||||||||||
Sbjct: 1351 acggtggagatgaga 1365
>PTA.sd.4375.C1 nseq=4
Length = 1235
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 206 ttaacggtggagatg 220
|||||||||||||||
Sbjct: 780 ttaacggtggagatg 766
>PTA.sd.3645.C1 nseq=12
Length = 1186
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 281 gaagagttcatcggc 295
|||||||||||||||
Sbjct: 376 gaagagttcatcggc 362
>PTA.sd.2936.C1 nseq=11
Length = 2269
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 59 taaacgggtcaacaa 73
|||||||||||||||
Sbjct: 62 taaacgggtcaacaa 48
>PTA.sd.2809.C1 nseq=3
Length = 1717
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 210 cggtggagatgagag 224
|||||||||||||||
Sbjct: 39 cggtggagatgagag 25
>PTA.sd.2604.C1 nseq=15
Length = 1885
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 75 tgtttgcacggcggagaaa 93
||||| |||||||||||||
Sbjct: 351 tgtttccacggcggagaaa 369
>PTA.sd.2379.C1 nseq=4
Length = 3530
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 acgggtcaacaagtg 76
|||||||||||||||
Sbjct: 2737 acgggtcaacaagtg 2723
>PTA.sd.2373.C1 nseq=6
Length = 1318
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 3 agacggtaacgagct 17
|||||||||||||||
Sbjct: 356 agacggtaacgagct 370
>PTA.sd.1756.C1 nseq=14
Length = 629
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 84 ggcggagaaatgttg 98
|||||||||||||||
Sbjct: 326 ggcggagaaatgttg 340
>PTA.sd.17036.C1 nseq=5
Length = 1276
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 218 atgagagtggagatgttga 236
|||||| ||||||||||||
Sbjct: 607 atgagattggagatgttga 625
>PTA.sd.16792.C1 nseq=9
Length = 1259
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 cacggcggagaaatg 95
|||||||||||||||
Sbjct: 286 cacggcggagaaatg 300
>PTA.sd.16460.C1 nseq=10
Length = 2350
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 77 tttgcacggcggaga 91
|||||||||||||||
Sbjct: 2066 tttgcacggcggaga 2080
>PTA.sd.16331.C1 nseq=5
Length = 1945
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 138 ggagaagaataatggggttggtg 160
||||||||||||| || ||||||
Sbjct: 1701 ggagaagaataattggtttggtg 1723
>PTA.sd.16215.C1 nseq=4
Length = 1555
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 agaaatgttgtgtct 103
|||||||||||||||
Sbjct: 1468 agaaatgttgtgtct 1482
>PTA.sd.16214.C1 nseq=9
Length = 2537
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 89 agaaatgttgtgtct 103
|||||||||||||||
Sbjct: 2537 agaaatgttgtgtct 2523
>PTA.sd.16124.C1 nseq=6
Length = 3398
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 249 gaaagtgttgattgtgtgt 267
||||||||||||| |||||
Sbjct: 1337 gaaagtgttgattatgtgt 1355
>PTA.sd.16089.C1 nseq=4
Length = 687
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 269 gggttatcgccggaa 283
|||||||||||||||
Sbjct: 277 gggttatcgccggaa 291
>PTA.sd.15920.C1 nseq=2
Length = 1574
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 taacggtggagatga 221
|||||||||||||||
Sbjct: 1171 taacggtggagatga 1185
>PTA.sd.13990.C1 nseq=5
Length = 1847
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 taaacgggtcaacaa 73
|||||||||||||||
Sbjct: 1135 taaacgggtcaacaa 1149
>PTA.sd.13474.C1 nseq=5
Length = 1801
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 269 gggttatcgccggaa 283
|||||||||||||||
Sbjct: 88 gggttatcgccggaa 74
>PTA.sd.12892.C1 nseq=8
Length = 2182
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 ttgtggtttaggtat 59
|||||||||||||||
Sbjct: 365 ttgtggtttaggtat 379
>PTA.sd.11936.C1 nseq=3
Length = 3952
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 43 gcttgtggtttaggt 57
|||||||||||||||
Sbjct: 1358 gcttgtggtttaggt 1372
>PTA.sd.1166.C1 nseq=7
Length = 3258
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 44 cttgtggtttaggta 58
|||||||||||||||
Sbjct: 3103 cttgtggtttaggta 3117
>rps8.F
Length = 405
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 83 cggcggagaaatgttgtgt 101
|||||||||||| ||||||
Sbjct: 375 cggcggagaaattttgtgt 393
>At5g52090.F
Length = 2031
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 taacggtggagatga 221
|||||||||||||||
Sbjct: 1738 taacggtggagatga 1724
>At5g37150.F
Length = 2520
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 taacggtggagatga 221
|||||||||||||||
Sbjct: 2227 taacggtggagatga 2213
>At5g20870.F
Length = 1506
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 225 tggagatgttgatcggacg 243
|||| ||||||||||||||
Sbjct: 423 tggatatgttgatcggacg 405
>At5g11990.F
Length = 546
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 233 ttgatcggacggtga 247
|||||||||||||||
Sbjct: 69 ttgatcggacggtga 55
>At4g36090.F
Length = 1518
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 224 gtggagatgttgatc 238
|||||||||||||||
Sbjct: 878 gtggagatgttgatc 892
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)