BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_01563
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.4664.C1 nseq=38 583 e-166
PTA.sd.4143.C1 nseq=7 36 0.14
PTA.sd.16980.C1 nseq=5 36 0.14
PTA.sd.8429.C1 nseq=7 34 0.56
PTA.sd.5279.C1 nseq=7 34 0.56
PTA.sd.17969.C1 nseq=70 34 0.56
PTA.sd.14033.C1 nseq=12 34 0.56
PTA.sd.13162.C1 nseq=12 34 0.56
At4g09780.F 34 0.56
PTA.sd.8268.C1 nseq=4 32 2.2
PTA.sd.8113.C1 nseq=2 32 2.2
PTA.sd.7096.C1 nseq=13 32 2.2
PTA.sd.6836.C1 nseq=2 32 2.2
PTA.sd.448.C1 nseq=37 32 2.2
PTA.sd.402.C1 nseq=9 32 2.2
>PTA.sd.4664.C1 nseq=38
Length = 2205
Score = 583 bits (294), Expect = e-166
Identities = 297/298 (99%)
Strand = Plus / Plus
Query: 1 cggaaacggttcccttggagaatctcctagcagttcaccggagaaatctgctcccaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1890 cggaaacggttcccttggagaatctcctagcagttcaccggagaaatctgctcccaccaa 1949
Query: 61 cttataaaaagtttttttttgatatttggttttgttgggggggaaagaaagaaggatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1950 cttataaaaagtttttttttgatatttggttttgttgggggggaaagaaagaaggatgat 2009
Query: 121 gaatcaaaaataagattttgagagcagtctctcaaacaatcgcccttttgcaccactcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2010 gaatcaaaaataagattttgagagcagtctctcaaacaatcgcccttttgcaccactcac 2069
Query: 181 tctttatagtctgtagcttttttttccttacattcttttcagttcaatgtggtttcacgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2070 tctttatagtctgtagcttttttttccttacattcttttcagttcaatgtggtttcacgt 2129
Query: 241 tctaagtttcttccttgtgtgtatcgttgaagtcaaaaaaataatagatttagttctt 298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2130 tctaagtttcttccttgtgtgtatcgttgaagtcaaaaagataatagatttagttctt 2187
>PTA.sd.4143.C1 nseq=7
Length = 3770
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 192 tgtagcttttttttcctt 209
||||||||||||||||||
Sbjct: 3491 tgtagcttttttttcctt 3474
>PTA.sd.16980.C1 nseq=5
Length = 602
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 199 tttttttccttacattct 216
||||||||||||||||||
Sbjct: 18 tttttttccttacattct 35
>PTA.sd.8429.C1 nseq=7
Length = 2226
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 132 aagattttgagagcagt 148
|||||||||||||||||
Sbjct: 475 aagattttgagagcagt 459
>PTA.sd.5279.C1 nseq=7
Length = 3997
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 64 ataaaaagttttttttt 80
|||||||||||||||||
Sbjct: 3790 ataaaaagttttttttt 3806
>PTA.sd.17969.C1 nseq=70
Length = 1420
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 270 aagtcaaaaaaataata 286
|||||||||||||||||
Sbjct: 77 aagtcaaaaaaataata 61
>PTA.sd.14033.C1 nseq=12
Length = 552
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 72 tttttttttgatatttg 88
|||||||||||||||||
Sbjct: 545 tttttttttgatatttg 529
>PTA.sd.13162.C1 nseq=12
Length = 679
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 114 ggatgatgaatcaaaaa 130
|||||||||||||||||
Sbjct: 610 ggatgatgaatcaaaaa 626
>At4g09780.F
Length = 1332
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 73 ttttttttgatatttggtttt 93
|||||||| ||||||||||||
Sbjct: 954 tttttttttatatttggtttt 974
>PTA.sd.8268.C1 nseq=4
Length = 1933
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 131 taagattttgagagca 146
||||||||||||||||
Sbjct: 1895 taagattttgagagca 1910
>PTA.sd.8113.C1 nseq=2
Length = 661
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 73 ttttttttgatatttg 88
||||||||||||||||
Sbjct: 530 ttttttttgatatttg 545
>PTA.sd.7096.C1 nseq=13
Length = 1264
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 190 tctgtagctttttttt 205
||||||||||||||||
Sbjct: 1202 tctgtagctttttttt 1217
>PTA.sd.6836.C1 nseq=2
Length = 709
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 72 tttttttttgatattt 87
||||||||||||||||
Sbjct: 555 tttttttttgatattt 570
>PTA.sd.448.C1 nseq=37
Length = 1087
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 39 cggagaaatctgctcc 54
||||||||||||||||
Sbjct: 507 cggagaaatctgctcc 522
>PTA.sd.402.C1 nseq=9
Length = 3114
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 103 gaaagaaagaaggatgatga 122
||||||| ||||||||||||
Sbjct: 2815 gaaagaaggaaggatgatga 2834
>PTA.sd.3854.C1 nseq=7
Length = 1366
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 64 ataaaaagtttttttt 79
||||||||||||||||
Sbjct: 70 ataaaaagtttttttt 55
>PTA.sd.3652.C1 nseq=8
Length = 6551
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 113 aggatgatgaatcaaa 128
||||||||||||||||
Sbjct: 5966 aggatgatgaatcaaa 5981
>PTA.sd.3304.C1 nseq=5
Length = 1586
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 111 gaaggatgatgaatca 126
||||||||||||||||
Sbjct: 1509 gaaggatgatgaatca 1524
>PTA.sd.2574.C1 nseq=15
Length = 2312
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 34 ttcaccggagaaatct 49
||||||||||||||||
Sbjct: 555 ttcaccggagaaatct 570
>PTA.sd.17338.C1 nseq=3
Length = 3976
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 216 ttttcagttcaatgtg 231
||||||||||||||||
Sbjct: 49 ttttcagttcaatgtg 34
>PTA.sd.16288.C1 nseq=24
Length = 2045
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 85 tttggttttgttgggg 100
||||||||||||||||
Sbjct: 342 tttggttttgttgggg 357
>PTA.sd.16205.C1 nseq=2
Length = 1036
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 138 ttgagagcagtctctc 153
||||||||||||||||
Sbjct: 992 ttgagagcagtctctc 977
>PTA.sd.16045.C1 nseq=41
Length = 1224
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 41 gagaaatctgctccca 56
||||||||||||||||
Sbjct: 809 gagaaatctgctccca 824
>PTA.sd.14692.C1 nseq=4
Length = 1990
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 73 ttttttttgatatttggttt 92
|||| |||||||||||||||
Sbjct: 1815 ttttctttgatatttggttt 1796
>PTA.sd.13734.C1 nseq=17
Length = 1951
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 65 taaaaagttttttttt 80
||||||||||||||||
Sbjct: 73 taaaaagttttttttt 88
>PTA.sd.13498.C1 nseq=2
Length = 3693
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 84 atttggttttgttggg 99
||||||||||||||||
Sbjct: 200 atttggttttgttggg 215
>PTA.sd.13490.C1 nseq=5
Length = 2551
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 215 cttttcagttcaatgt 230
||||||||||||||||
Sbjct: 110 cttttcagttcaatgt 125
>PTA.sd.12573.C1 nseq=7
Length = 2555
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 238 cgttctaagtttcttc 253
||||||||||||||||
Sbjct: 941 cgttctaagtttcttc 926
>PTA.sd.12173.C1 nseq=33
Length = 1721
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 99 gggggaaagaaagaag 114
||||||||||||||||
Sbjct: 1615 gggggaaagaaagaag 1600
>PTA.sd.10657.C1 nseq=7
Length = 800
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 59 aacttataaaaagttt 74
||||||||||||||||
Sbjct: 701 aacttataaaaagttt 716
>At4g11950.F
Length = 984
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 108 aaagaaggatgatgaa 123
||||||||||||||||
Sbjct: 37 aaagaaggatgatgaa 22
>At4g11540.F
Length = 1578
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 222 gttcaatgtggtttca 237
||||||||||||||||
Sbjct: 553 gttcaatgtggtttca 568
>At3g28770.F
Length = 6246
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 111 gaaggatgatgaatca 126
||||||||||||||||
Sbjct: 1833 gaaggatgatgaatca 1848
>At5g56040.F PTA.sd.17179.singlet
Length = 3273
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 34 ttcaccggagaaatc 48
|||||||||||||||
Sbjct: 1759 ttcaccggagaaatc 1773
>At5g23720.F PTA.sd.15508.singlet
Length = 2841
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 16 tggagaatctcctagcagt 34
||||||||||| |||||||
Sbjct: 1887 tggagaatctcttagcagt 1905
>PTA.sd.9837.C1 nseq=3
Length = 3965
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 220 cagttcaatgtggtttcac 238
||||||| |||||||||||
Sbjct: 3630 cagttcattgtggtttcac 3648
>PTA.sd.953.C1 nseq=8
Length = 4072
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 tgtagcttttttttc 206
|||||||||||||||
Sbjct: 3928 tgtagcttttttttc 3942
>PTA.sd.9374.C1 nseq=4
Length = 1645
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 101 gggaaagaaagaagg 115
|||||||||||||||
Sbjct: 771 gggaaagaaagaagg 785
>PTA.sd.9373.C1 nseq=7
Length = 3362
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 101 gggaaagaaagaagg 115
|||||||||||||||
Sbjct: 654 gggaaagaaagaagg 668
>PTA.sd.9321.C1 nseq=4
Length = 1918
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 84 atttggttttgttgg 98
|||||||||||||||
Sbjct: 1817 atttggttttgttgg 1831
>PTA.sd.9275.C1 nseq=3
Length = 1851
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 195 agcttttttttcctt 209
|||||||||||||||
Sbjct: 116 agcttttttttcctt 130
>PTA.sd.9259.C1 nseq=41
Length = 2377
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 agtttttttttgata 84
|||||||||||||||
Sbjct: 32 agtttttttttgata 18
>PTA.sd.9216.C1 nseq=38
Length = 2091
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 102 ggaaagaaagaagga 116
|||||||||||||||
Sbjct: 403 ggaaagaaagaagga 417
>PTA.sd.8923.C1 nseq=10
Length = 1444
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 218 ttcagttcaatgtgg 232
|||||||||||||||
Sbjct: 1156 ttcagttcaatgtgg 1170
>PTA.sd.8424.C1 nseq=11
Length = 2044
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 34 ttcaccggagaaatctgct 52
||||||||||||| |||||
Sbjct: 974 ttcaccggagaaagctgct 956
>PTA.sd.8334.C1 nseq=5
Length = 2440
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 104 aaagaaagaaggatgatga 122
||||||||||||| |||||
Sbjct: 22 aaagaaagaaggaagatga 4
>PTA.sd.8308.C1 nseq=9
Length = 2174
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 190 tctgtagcttttttt 204
|||||||||||||||
Sbjct: 230 tctgtagcttttttt 244
>PTA.sd.7972.C1 nseq=15
Length = 1032
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 tttggttttgttggg 99
|||||||||||||||
Sbjct: 796 tttggttttgttggg 810
>PTA.sd.7763.C1 nseq=8
Length = 1442
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 198 ttttttttccttaca 212
|||||||||||||||
Sbjct: 323 ttttttttccttaca 309
>PTA.sd.7544.C1 nseq=23
Length = 3308
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 66 aaaaagttttttttt 80
|||||||||||||||
Sbjct: 65 aaaaagttttttttt 51
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)