BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_01469
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.9601.C1 nseq=3 595 e-170
At5g48740.F PTA.sd.16675.singlet 32 2.2
PTA.sd.4871.C1 nseq=10 32 2.2
PTA.sd.4102.C1 nseq=12 32 2.2
PTA.sd.3680.C1 nseq=2 32 2.2
PTA.sd.17166.C1 nseq=3 32 2.2
PTA.sd.12757.C1 nseq=10 32 2.2
At2g13010.F 32 2.2
At1g47520.F 32 2.2
At5g62960.F PTA.sd.17694.singlet 30 8.7
At1g20730.F PTA.sd.1519.singlet 30 8.7
PTA.sd.6414.C1 nseq=6 30 8.7
PTA.sd.6051.C1 nseq=49 30 8.7
PTA.sd.4134.C1 nseq=50 30 8.7
PTA.sd.3013.C1 nseq=11 30 8.7
>PTA.sd.9601.C1 nseq=3
Length = 1872
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 acagaataatgttgtaagaatcactgagttcttgcttggtgatttgaagagtaagctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 acagaataatgttgtaagaatcactgagttcttgcttggtgatttgaagagtaagctgtt 1151
Query: 61 gttttgttgggacatgtcttattgtgctacaaccagtgttggttcgcttgaaaataggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 gttttgttgggacatgtcttattgtgctacaaccagtgttggttcgcttgaaaataggta 1211
Query: 121 caaatatgtggtgttcaaggatctaaaccggctttgggagaaacacgatccaagacttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 caaatatgtggtgttcaaggatctaaaccggctttgggagaaacacgatccaagacttcc 1271
Query: 181 ttggaaaatgggtgattacaacgaaaccaacacggttttgctagacgattctccttacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 ttggaaaatgggtgattacaacgaaaccaacacggttttgctagacgattctccttacaa 1331
Query: 241 ggctttgcttaacccgccatatacagcaatattccctcattcatacaatcatcagaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 ggctttgcttaacccgccatatacagcaatattccctcattcatacaatcatcagaacaa 1391
>At5g48740.F PTA.sd.16675.singlet
Length = 2640
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 51 gtaagctgttgttttg 66
||||||||||||||||
Sbjct: 1396 gtaagctgttgttttg 1381
>PTA.sd.4871.C1 nseq=10
Length = 915
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 50 agtaagctgttgtttt 65
||||||||||||||||
Sbjct: 772 agtaagctgttgtttt 787
>PTA.sd.4102.C1 nseq=12
Length = 1469
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 173 agacttccttggaaaa 188
||||||||||||||||
Sbjct: 367 agacttccttggaaaa 382
>PTA.sd.3680.C1 nseq=2
Length = 1790
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 161 aaacacgatccaagac 176
||||||||||||||||
Sbjct: 334 aaacacgatccaagac 319
>PTA.sd.17166.C1 nseq=3
Length = 1482
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 73 catgtcttattgtgctacaa 92
|||||||| |||||||||||
Sbjct: 298 catgtcttcttgtgctacaa 317
>PTA.sd.12757.C1 nseq=10
Length = 1607
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 73 catgtcttattgtgctacaa 92
|||||||| |||||||||||
Sbjct: 340 catgtcttcttgtgctacaa 359
>At2g13010.F
Length = 3123
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 204 aaaccaacacggtttt 219
||||||||||||||||
Sbjct: 1902 aaaccaacacggtttt 1887
>At1g47520.F
Length = 1905
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 57 tgttgttttgttggga 72
||||||||||||||||
Sbjct: 127 tgttgttttgttggga 142
>At5g62960.F PTA.sd.17694.singlet
Length = 954
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 ttcttgcttggtgat 43
|||||||||||||||
Sbjct: 778 ttcttgcttggtgat 792
>At1g20730.F PTA.sd.1519.singlet
Length = 1704
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 196 ttacaacgaaaccaacacg 214
|||| ||||||||||||||
Sbjct: 1012 ttaccacgaaaccaacacg 994
>PTA.sd.6414.C1 nseq=6
Length = 2140
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 169 tccaagacttccttg 183
|||||||||||||||
Sbjct: 1670 tccaagacttccttg 1656
>PTA.sd.6051.C1 nseq=49
Length = 3626
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 ccaacacggttttgc 221
|||||||||||||||
Sbjct: 1853 ccaacacggttttgc 1839
>PTA.sd.4134.C1 nseq=50
Length = 1007
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 40 tgatttgaagagtaagctg 58
||||||||||| |||||||
Sbjct: 658 tgatttgaagactaagctg 676
>PTA.sd.3013.C1 nseq=11
Length = 833
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 115 taggtacaaatatgt 129
|||||||||||||||
Sbjct: 266 taggtacaaatatgt 280
>PTA.sd.2624.C1 nseq=7
Length = 1022
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 74 atgtcttattgtgct 88
|||||||||||||||
Sbjct: 499 atgtcttattgtgct 513
>PTA.sd.15587.C1 nseq=3
Length = 10045
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 192 gtgattacaacgaaa 206
|||||||||||||||
Sbjct: 9529 gtgattacaacgaaa 9515
>PTA.sd.14769.C1 nseq=8
Length = 1575
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 279 attcatacaatcatcagaa 297
||||||||||| |||||||
Sbjct: 215 attcatacaataatcagaa 197
>PTA.sd.12007.C1 nseq=7
Length = 1914
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 43 tttgaagagtaagct 57
|||||||||||||||
Sbjct: 1531 tttgaagagtaagct 1545
>PTA.sd.1124.C1 nseq=5
Length = 836
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 109 tgaaaataggtacaaatat 127
|||||||||||||| ||||
Sbjct: 702 tgaaaataggtacatatat 684
>PTA.sd.11002.C1 nseq=6
Length = 1082
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 237 acaaggctttgctta 251
|||||||||||||||
Sbjct: 777 acaaggctttgctta 763
>PTA.sd.10727.C1 nseq=6
Length = 908
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 tttgggagaaacacg 167
|||||||||||||||
Sbjct: 41 tttgggagaaacacg 27
>PTA.sd.10312.C1 nseq=2
Length = 1124
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 110 gaaaataggtacaaa 124
|||||||||||||||
Sbjct: 1089 gaaaataggtacaaa 1075
>At5g37100.F
Length = 810
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 130 ggtgttcaaggatct 144
|||||||||||||||
Sbjct: 686 ggtgttcaaggatct 700
>At5g08700.F
Length = 2307
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 151 gctttgggagaaaca 165
|||||||||||||||
Sbjct: 1261 gctttgggagaaaca 1275
>At4g28580.F
Length = 1260
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 43 tttgaagagtaagct 57
|||||||||||||||
Sbjct: 522 tttgaagagtaagct 536
>At4g19610.F
Length = 2319
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 151 gctttgggagaaaca 165
|||||||||||||||
Sbjct: 1105 gctttgggagaaaca 1119
>At3g04990.F
Length = 684
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 36 ttggtgatttgaaga 50
|||||||||||||||
Sbjct: 200 ttggtgatttgaaga 214
>At1g32850.F
Length = 2664
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 152 ctttgggagaaacac 166
|||||||||||||||
Sbjct: 816 ctttgggagaaacac 830
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)