BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_01375
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.14773.C1 nseq=4 581 e-165
PTA.sd.13083.C1 nseq=9 36 0.14
At5g14720.F PTA.sd.14870.singlet 34 0.56
PTA.sd.17588.C1 nseq=4 34 0.56
At5g36200.F 34 0.56
At2g40310.F 34 0.56
PTA.sd.9785.C1 nseq=2 32 2.2
PTA.sd.374.C1 nseq=4 32 2.2
PTA.sd.14634.C1 nseq=2 32 2.2
PTA.sd.12623.C1 nseq=2 32 2.2
At4g28070.F 32 2.2
At4g10230.F 32 2.2
At4g03630.F 32 2.2
At1g24380.F 32 2.2
At5g28850.F PTA.sd.15817.singlet 30 8.7
>PTA.sd.14773.C1 nseq=4
Length = 2672
Score = 581 bits (293), Expect = e-165
Identities = 300/301 (99%), Gaps = 1/301 (0%)
Strand = Plus / Plus
Query: 1 ttcacagaatgg-aggatggagatttatgtgtatctttctgtttcctagacaggctatgg 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2072 ttcacagaatgggaggatggagatttatgtgtatctttctgtttcctagacaggctatgg 2131
Query: 60 ctatgtaaagccggggaactggaacgcataagaccatttagaattggagaccgggttaag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2132 ctatgtaaagccggggaactggaacgcataagaccatttagaattggagaccgggttaag 2191
Query: 120 ataaaggatggactggttacacctcggtggggttggggaatggagacccatgcaagtaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 ataaaggatggactggttacacctcggtggggttggggaatggagacccatgcaagtaaa 2251
Query: 180 ggacatgttgtgggagtggatgcaaatgggaaattgagaataaaattcctgtggagggaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 ggacatgttgtgggagtggatgcaaatgggaaattgagaataaaattcctgtggagggaa 2311
Query: 240 gggcggccctggattggtgatcctgcggatatagttctagatgaaacttctggctgaatc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2312 gggcggccctggattggtgatcctgcggatatagttctagatgaaacttctggctgaatc 2371
Query: 300 a 300
|
Sbjct: 2372 a 2372
>PTA.sd.13083.C1 nseq=9
Length = 1173
Score = 36.2 bits (18), Expect = 0.14
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 25 tatgtgtatctttctgtttcct 46
||||||| ||||||||||||||
Sbjct: 1069 tatgtgtttctttctgtttcct 1048
>At5g14720.F PTA.sd.14870.singlet
Length = 1686
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 89 aagaccatttagaattg 105
|||||||||||||||||
Sbjct: 882 aagaccatttagaattg 866
>PTA.sd.17588.C1 nseq=4
Length = 2837
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 270 atagttctagatgaaac 286
|||||||||||||||||
Sbjct: 2006 atagttctagatgaaac 1990
>At5g36200.F
Length = 1416
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9 atggaggatggagattt 25
|||||||||||||||||
Sbjct: 864 atggaggatggagattt 880
>At2g40310.F
Length = 1215
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23 tttatgtgtatctttct 39
|||||||||||||||||
Sbjct: 30 tttatgtgtatctttct 46
>PTA.sd.9785.C1 nseq=2
Length = 1414
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 203 aaatgggaaattgaga 218
||||||||||||||||
Sbjct: 29 aaatgggaaattgaga 14
>PTA.sd.374.C1 nseq=4
Length = 1176
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 187 ttgtgggagtggatgcaaat 206
|||||| |||||||||||||
Sbjct: 512 ttgtggtagtggatgcaaat 531
>PTA.sd.14634.C1 nseq=2
Length = 1290
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 8 aatggaggatggagat 23
||||||||||||||||
Sbjct: 937 aatggaggatggagat 952
>PTA.sd.12623.C1 nseq=2
Length = 1312
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 252 attggtgatcctgcggatat 271
|||||||||||||| |||||
Sbjct: 1124 attggtgatcctgctgatat 1143
>At4g28070.F
Length = 1038
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 14 ggatggagatttatgt 29
||||||||||||||||
Sbjct: 228 ggatggagatttatgt 243
>At4g10230.F
Length = 822
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 210 aaattgagaataaaattcct 229
||||||||||||||| ||||
Sbjct: 50 aaattgagaataaaaatcct 69
>At4g03630.F
Length = 663
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 64 gtaaagccggggaact 79
||||||||||||||||
Sbjct: 392 gtaaagccggggaact 377
>At1g24380.F
Length = 822
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 210 aaattgagaataaaattcct 229
||||||||||||||| ||||
Sbjct: 50 aaattgagaataaaaatcct 69
>At5g28850.F PTA.sd.15817.singlet
Length = 1611
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 tggatgcaaatggga 210
|||||||||||||||
Sbjct: 1202 tggatgcaaatggga 1216
>PTA.sd.9879.C1 nseq=6
Length = 1580
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 282 gaaacttctggctga 296
|||||||||||||||
Sbjct: 61 gaaacttctggctga 47
>PTA.sd.9010.C2 nseq=2
Length = 766
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 31 tatctttctgtttcc 45
|||||||||||||||
Sbjct: 727 tatctttctgtttcc 741
>PTA.sd.5534.C1 nseq=31
Length = 1529
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 90 agaccatttagaattggag 108
|||||| ||||||||||||
Sbjct: 168 agaccagttagaattggag 150
>PTA.sd.5409.C1 nseq=13
Length = 1135
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 151 gttggggaatggaga 165
|||||||||||||||
Sbjct: 230 gttggggaatggaga 244
>PTA.sd.5272.C1 nseq=21
Length = 1829
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 278 agatgaaacttctgg 292
|||||||||||||||
Sbjct: 269 agatgaaacttctgg 283
>PTA.sd.491.C1 nseq=12
Length = 2917
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 tgtatctttctgttt 43
|||||||||||||||
Sbjct: 2827 tgtatctttctgttt 2841
>PTA.sd.17206.C1 nseq=7
Length = 1675
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 270 atagttctagatgaa 284
|||||||||||||||
Sbjct: 1033 atagttctagatgaa 1019
>PTA.sd.16936.C1 nseq=13
Length = 1708
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 218 aataaaattcctgtg 232
|||||||||||||||
Sbjct: 931 aataaaattcctgtg 945
>PTA.sd.15818.C1 nseq=12
Length = 2161
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 tggatgcaaatggga 210
|||||||||||||||
Sbjct: 1420 tggatgcaaatggga 1434
>PTA.sd.14397.C1 nseq=5
Length = 3703
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 187 ttgtgggagtggatg 201
|||||||||||||||
Sbjct: 548 ttgtgggagtggatg 562
>PTA.sd.14130.C1 nseq=4
Length = 2778
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 193 gagtggatgcaaatg 207
|||||||||||||||
Sbjct: 880 gagtggatgcaaatg 894
>PTA.sd.14024.C1 nseq=3
Length = 1159
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 164 gacccatgcaagtaa 178
|||||||||||||||
Sbjct: 277 gacccatgcaagtaa 263
>PTA.sd.12177.C1 nseq=9
Length = 1173
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 86 cataagaccatttag 100
|||||||||||||||
Sbjct: 874 cataagaccatttag 860
>At5g59940.F
Length = 1956
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 194 agtggatgcaaatgg 208
|||||||||||||||
Sbjct: 1460 agtggatgcaaatgg 1446
>At3g20150.F
Length = 3285
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 115 ttaagataaaggatg 129
|||||||||||||||
Sbjct: 704 ttaagataaaggatg 718
>At2g41450.F
Length = 2976
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 199 atgcaaatgggaaat 213
|||||||||||||||
Sbjct: 2603 atgcaaatgggaaat 2617
>At2g11230.F
Length = 2889
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 16 atggagatttatgtg 30
|||||||||||||||
Sbjct: 2447 atggagatttatgtg 2461
>At1g61850.F
Length = 3798
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 12 gaggatggagattta 26
|||||||||||||||
Sbjct: 1732 gaggatggagattta 1746
>At1g14110.F
Length = 1308
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 36 ttctgtttcctagac 50
|||||||||||||||
Sbjct: 409 ttctgtttcctagac 395
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)