BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_01281
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.10850.C1 nseq=5 595 e-170
PTA.sd.4204.C1 nseq=5 34 0.56
PTA.sd.10248.C1 nseq=3 34 0.56
At1g29480.F 34 0.56
PTA.sd.8197.C1 nseq=14 32 2.2
PTA.sd.12483.C1 nseq=3 32 2.2
At4g03300.F 32 2.2
At3g23970.F 32 2.2
PTA.sd.9729.C1 nseq=38 30 8.7
PTA.sd.7505.C1 nseq=18 30 8.7
PTA.sd.730.C1 nseq=11 30 8.7
PTA.sd.5674.C1 nseq=6 30 8.7
PTA.sd.4037.C1 nseq=3 30 8.7
PTA.sd.26.C1 nseq=8 30 8.7
PTA.sd.2308.C1 nseq=4 30 8.7
>PTA.sd.10850.C1 nseq=5
Length = 5455
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 cccatctttacgctgctatctctgatgctaagtgccgagccgctgttcaacttttgttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4691 cccatctttacgctgctatctctgatgctaagtgccgagccgctgttcaacttttgttga 4750
Query: 61 tccaggctgtgatggagatttacaacatgtacagacctcagctttcagcgaaaaacacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4751 tccaggctgtgatggagatttacaacatgtacagacctcagctttcagcgaaaaacacat 4810
Query: 121 tagtcctcgtagatgcattgcacggtgtagctttacatgctcacggaataaacagtaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4811 tagtcctcgtagatgcattgcacggtgtagctttacatgctcacggaataaacagtaaca 4870
Query: 181 caatacttcgttcaagactacaagagctaggacccatgacacagatgcaagatcctccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4871 caatacttcgttcaagactacaagagctaggacccatgacacagatgcaagatcctccac 4930
Query: 241 tacttcgtcttgaaaacgagtcttaccaaatctgcctgacattcttacagaatcttgttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931 tacttcgtcttgaaaacgagtcttaccaaatctgcctgacattcttacagaatcttgttg 4990
>PTA.sd.4204.C1 nseq=5
Length = 1766
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 275 cctgacattcttacaga 291
|||||||||||||||||
Sbjct: 593 cctgacattcttacaga 609
>PTA.sd.10248.C1 nseq=3
Length = 685
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 35 ccgagccgctgttcaactttt 55
||||||||||||| |||||||
Sbjct: 199 ccgagccgctgttgaactttt 179
>At1g29480.F
Length = 678
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 256 acgagtcttaccaaatc 272
|||||||||||||||||
Sbjct: 190 acgagtcttaccaaatc 206
>PTA.sd.8197.C1 nseq=14
Length = 2086
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 65 ggctgtgatggagatt 80
||||||||||||||||
Sbjct: 138 ggctgtgatggagatt 123
>PTA.sd.12483.C1 nseq=3
Length = 1562
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 251 tgaaaacgagtcttac 266
||||||||||||||||
Sbjct: 1523 tgaaaacgagtcttac 1508
>At4g03300.F
Length = 3858
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 164 cggaataaacagtaac 179
||||||||||||||||
Sbjct: 436 cggaataaacagtaac 421
>At3g23970.F
Length = 1242
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 113 aaacacattagtcctc 128
||||||||||||||||
Sbjct: 1062 aaacacattagtcctc 1047
>PTA.sd.9729.C1 nseq=38
Length = 1418
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 103 tttcagcgaaaaaca 117
|||||||||||||||
Sbjct: 740 tttcagcgaaaaaca 754
>PTA.sd.7505.C1 nseq=18
Length = 2749
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 233 tcctccactacttcgtctt 251
|||||| ||||||||||||
Sbjct: 1356 tcctcctctacttcgtctt 1374
>PTA.sd.730.C1 nseq=11
Length = 1981
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 13 ctgctatctctgatg 27
|||||||||||||||
Sbjct: 1216 ctgctatctctgatg 1202
>PTA.sd.5674.C1 nseq=6
Length = 1925
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 13 ctgctatctctgatg 27
|||||||||||||||
Sbjct: 1237 ctgctatctctgatg 1223
>PTA.sd.4037.C1 nseq=3
Length = 8334
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 277 tgacattcttacaga 291
|||||||||||||||
Sbjct: 2376 tgacattcttacaga 2362
>PTA.sd.26.C1 nseq=8
Length = 1367
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 51 cttttgttgatccag 65
|||||||||||||||
Sbjct: 991 cttttgttgatccag 1005
>PTA.sd.2308.C1 nseq=4
Length = 2519
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 148 tagctttacatgctc 162
|||||||||||||||
Sbjct: 272 tagctttacatgctc 286
>PTA.sd.2261.C1 nseq=8
Length = 3600
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 54 ttgttgatccaggct 68
|||||||||||||||
Sbjct: 2225 ttgttgatccaggct 2239
>PTA.sd.1880.C1 nseq=4
Length = 3331
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 281 attcttacagaatct 295
|||||||||||||||
Sbjct: 144 attcttacagaatct 158
>PTA.sd.16473.C1 nseq=23
Length = 910
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 228 caagatcctccacta 242
|||||||||||||||
Sbjct: 41 caagatcctccacta 55
>PTA.sd.14562.C1 nseq=12
Length = 2469
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 74 ggagatttacaacat 88
|||||||||||||||
Sbjct: 2360 ggagatttacaacat 2374
>PTA.sd.14223.C1 nseq=3
Length = 2668
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 72 atggagatttacaac 86
|||||||||||||||
Sbjct: 888 atggagatttacaac 902
>PTA.sd.1369.C1 nseq=6
Length = 2134
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 218 gacacagatgcaaga 232
|||||||||||||||
Sbjct: 1212 gacacagatgcaaga 1226
>PTA.sd.13252.C1 nseq=6
Length = 3432
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 215 catgacacagatgca 229
|||||||||||||||
Sbjct: 3368 catgacacagatgca 3354
>PTA.sd.12866.C1 nseq=4
Length = 1486
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 15 gctatctctgatgct 29
|||||||||||||||
Sbjct: 1189 gctatctctgatgct 1175
>PTA.sd.11983.C1 nseq=11
Length = 1166
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 16 ctatctctgatgcta 30
|||||||||||||||
Sbjct: 758 ctatctctgatgcta 772
>PTA.sd.10330.C1 nseq=7
Length = 1893
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 280 cattcttacagaatc 294
|||||||||||||||
Sbjct: 516 cattcttacagaatc 502
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)