BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_01187
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.17934.C1 nseq=5 581 e-165
PTA.sd.10008.C1 nseq=4 38 0.036
PTA.sd.9639.C2 nseq=6 34 0.56
PTA.sd.13044.C1 nseq=11 34 0.56
At1g50820.F 34 0.56
PTA.sd.8500.C1 nseq=2 32 2.2
PTA.sd.2008.C1 nseq=4 32 2.2
PTA.sd.13095.C1 nseq=7 32 2.2
PTA.sd.12959.C1 nseq=25 32 2.2
PTA.sd.11788.C1 nseq=4 32 2.2
At4g31570.F 32 2.2
At4g13880.F 32 2.2
At1g19470.F 32 2.2
At2g18560.F PTA.sd.5263.singlet 30 8.7
PTA.sd.9515.C1 nseq=5 30 8.7
>PTA.sd.17934.C1 nseq=5
Length = 1408
Score = 581 bits (293), Expect = e-165
Identities = 300/301 (99%), Gaps = 1/301 (0%)
Strand = Plus / Plus
Query: 1 ccgagcagctttgggcggagggacaacgagtacatcggcggatcaaagtacaataagttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 ccgagcagctttgggcggagggacaacgagtacatcggcggatcaaagtacaataagttg 1147
Query: 61 ggaggatataacttctctagttaattccgaagatgcaagttacttcaatgcgccaaatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 ggaggatataacttctctagttaattccgaagatgcaagttacttcaatgcgccaaatca 1207
Query: 121 tgtgtaacattttgtttaaaactttatttgtacttaaatacataaagaggggttttctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208 tgtgtaacattttgtttaaaactttatttgtacttaaatacataaagaggggttttctat 1267
Query: 181 tttgtataaatctgtgtctttagggagtggtagaaaagttttatgga-ttgagattagta 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1268 tttgtataaatctgtgtctttagggagtggtagaaaagttttatggagttgagattagta 1327
Query: 240 ttcatgcagaaatttgtttattttagtttcaccttagctttattcgaacaacttatatga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1328 ttcatgcagaaatttgtttattttagtttcaccttagctttattcgaacaacttatatga 1387
Query: 300 t 300
|
Sbjct: 1388 t 1388
>PTA.sd.10008.C1 nseq=4
Length = 1139
Score = 38.2 bits (19), Expect = 0.036
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 29 agtacatcggcggatcaaagtacaataagttggga 63
||||| ||||| |||||||| || |||||||||||
Sbjct: 960 agtacttcggcagatcaaagcactataagttggga 994
>PTA.sd.9639.C2 nseq=6
Length = 1985
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 172 gttttctattttgtata 188
|||||||||||||||||
Sbjct: 1761 gttttctattttgtata 1777
>PTA.sd.13044.C1 nseq=11
Length = 2350
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 251 atttgtttattttagtt 267
|||||||||||||||||
Sbjct: 2267 atttgtttattttagtt 2283
>At1g50820.F
Length = 1587
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 190 atctgtgtctttaggga 206
|||||||||||||||||
Sbjct: 288 atctgtgtctttaggga 272
>PTA.sd.8500.C1 nseq=2
Length = 3308
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 205 gagtggtagaaaagtt 220
||||||||||||||||
Sbjct: 1662 gagtggtagaaaagtt 1647
>PTA.sd.2008.C1 nseq=4
Length = 2696
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 50 acaataagttgggagg 65
||||||||||||||||
Sbjct: 386 acaataagttgggagg 401
>PTA.sd.13095.C1 nseq=7
Length = 1034
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 246 cagaaatttgtttatt 261
||||||||||||||||
Sbjct: 767 cagaaatttgtttatt 782
>PTA.sd.12959.C1 nseq=25
Length = 2462
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 245 gcagaaatttgtttatttta 264
||||||| ||||||||||||
Sbjct: 2363 gcagaaaattgtttatttta 2344
>PTA.sd.11788.C1 nseq=4
Length = 4625
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 84 attccgaagatgcaag 99
||||||||||||||||
Sbjct: 1624 attccgaagatgcaag 1609
>At4g31570.F
Length = 8139
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 215 aaagttttatggattg 230
||||||||||||||||
Sbjct: 4599 aaagttttatggattg 4614
>At4g13880.F
Length = 2007
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 84 attccgaagatgcaag 99
||||||||||||||||
Sbjct: 1017 attccgaagatgcaag 1002
>At1g19470.F
Length = 1239
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 188 aaatctgtgtctttag 203
||||||||||||||||
Sbjct: 688 aaatctgtgtctttag 673
>At2g18560.F PTA.sd.5263.singlet
Length = 1335
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 193 tgtgtctttagggagtggt 211
||||| |||||||||||||
Sbjct: 735 tgtgtgtttagggagtggt 753
>PTA.sd.9515.C1 nseq=5
Length = 1255
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 165 aagaggggttttctatttt 183
|||||||||||||| ||||
Sbjct: 1050 aagaggggttttctctttt 1032
>PTA.sd.927.C1 nseq=5
Length = 1018
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 249 aaatttgtttatttt 263
|||||||||||||||
Sbjct: 123 aaatttgtttatttt 137
>PTA.sd.8762.C1 nseq=9
Length = 1579
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 264 agtttcaccttagctttat 282
|||||| ||||||||||||
Sbjct: 1369 agtttctccttagctttat 1387
>PTA.sd.7004.C1 nseq=20
Length = 1437
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 242 catgcagaaatttgt 256
|||||||||||||||
Sbjct: 455 catgcagaaatttgt 441
>PTA.sd.5678.C1 nseq=2
Length = 4323
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 42 atcaaagtacaataa 56
|||||||||||||||
Sbjct: 1389 atcaaagtacaataa 1375
>PTA.sd.5510.C1 nseq=23
Length = 6544
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 118 tcatgtgtaacattttgtt 136
|||| ||||||||||||||
Sbjct: 6497 tcatttgtaacattttgtt 6515
>PTA.sd.4817.C1 nseq=5
Length = 4177
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 18 gagggacaacgagta 32
|||||||||||||||
Sbjct: 3205 gagggacaacgagta 3191
>PTA.sd.4806.C1 nseq=4
Length = 1235
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 226 gattgagattagtat 240
|||||||||||||||
Sbjct: 972 gattgagattagtat 986
>PTA.sd.3998.C1 nseq=23
Length = 1947
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 249 aaatttgtttatttt 263
|||||||||||||||
Sbjct: 87 aaatttgtttatttt 73
>PTA.sd.2913.C1 nseq=45
Length = 1596
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 267 ttcaccttagcttta 281
|||||||||||||||
Sbjct: 666 ttcaccttagcttta 652
>PTA.sd.2580.C1 nseq=2
Length = 2032
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 235 tagtattcatgcaga 249
|||||||||||||||
Sbjct: 1743 tagtattcatgcaga 1757
>PTA.sd.17516.C1 nseq=3
Length = 1182
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 46 aagtacaataagttg 60
|||||||||||||||
Sbjct: 235 aagtacaataagttg 249
>PTA.sd.17328.C1 nseq=5
Length = 2577
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 168 aggggttttctattt 182
|||||||||||||||
Sbjct: 1445 aggggttttctattt 1431
>PTA.sd.14399.C1 nseq=19
Length = 1835
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 tttaaaactttattt 149
|||||||||||||||
Sbjct: 1642 tttaaaactttattt 1628
>PTA.sd.14037.C1 nseq=13
Length = 1938
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 143 tttatttgtacttaa 157
|||||||||||||||
Sbjct: 49 tttatttgtacttaa 35
>PTA.sd.13241.C1 nseq=23
Length = 938
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 131 tttgtttaaaacttt 145
|||||||||||||||
Sbjct: 808 tttgtttaaaacttt 822
>PTA.sd.12048.C1 nseq=2
Length = 5203
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 239 attcatgcagaaatt 253
|||||||||||||||
Sbjct: 892 attcatgcagaaatt 906
>PTA.sd.11836.C1 nseq=5
Length = 1484
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 228 ttgagattagtattc 242
|||||||||||||||
Sbjct: 21 ttgagattagtattc 35
>PTA.sd.11781.C1 nseq=4
Length = 2804
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 84 attccgaagatgcaa 98
|||||||||||||||
Sbjct: 1628 attccgaagatgcaa 1614
>PTA.sd.11696.C1 nseq=11
Length = 1813
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 249 aaatttgtttatttt 263
|||||||||||||||
Sbjct: 1801 aaatttgtttatttt 1787
>At5g05900.F
Length = 1353
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 103 cttcaatgcgccaaa 117
|||||||||||||||
Sbjct: 129 cttcaatgcgccaaa 143
>At2g27120.F
Length = 6465
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 242 catgcagaaatttgt 256
|||||||||||||||
Sbjct: 2875 catgcagaaatttgt 2861
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)