BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_01069
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.13879.C1 nseq=5 595 e-170
PTA.sd.8784.C1 nseq=17 36 0.14
PTA.sd.7427.C1 nseq=17 34 0.56
PTA.sd.10104.C1 nseq=6 34 0.56
PTA.sd.599.C1 nseq=13 32 2.2
PTA.sd.5240.C1 nseq=2 32 2.2
PTA.sd.4487.C1 nseq=35 32 2.2
PTA.sd.2500.C1 nseq=5 32 2.2
PTA.sd.17207.C1 nseq=7 32 2.2
PTA.sd.17047.C1 nseq=12 32 2.2
PTA.sd.11476.C1 nseq=2 32 2.2
At5g18880.F 32 2.2
PTA.sd.8398.C1 nseq=6 30 8.7
PTA.sd.832.C1 nseq=2 30 8.7
PTA.sd.7434.C1 nseq=10 30 8.7
>PTA.sd.13879.C1 nseq=5
Length = 1053
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 tcacagatggtaaagacaaaagacgatcaagtattcacgatatcaccactgttaacatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tcacagatggtaaagacaaaagacgatcaagtattcacgatatcaccactgttaacatcc 646
Query: 61 ctgacgcagacgcatccgcaaccgccacgaccgctgacgtagcactctctcctactccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ctgacgcagacgcatccgcaaccgccacgaccgctgacgtagcactctctcctactccag 706
Query: 121 ccaattcttttgacgttttccttcagccaaatcctcattacagtttcgcgtctgcgtctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ccaattcttttgacgttttccttcagccaaatcctcattacagtttcgcgtctgcgtctg 766
Query: 181 cgtctagctattataatgcgtttccgcagtggagttaaatcacttagaaattatctagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 cgtctagctattataatgcgtttccgcagtggagttaaatcacttagaaattatctagag 826
Query: 241 tttgtggtctcctatagatttgttacatacattttctacgtacatattactgcagaattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tttgtggtctcctatagatttgttacatacattttctacgtacatattactgcagaattg 886
>PTA.sd.8784.C1 nseq=17
Length = 1247
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 137 tttccttcagccaaatcc 154
||||||||||||||||||
Sbjct: 740 tttccttcagccaaatcc 723
>PTA.sd.7427.C1 nseq=17
Length = 1600
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 168 gcgtctgcgtctgcgtc 184
|||||||||||||||||
Sbjct: 43 gcgtctgcgtctgcgtc 27
>PTA.sd.10104.C1 nseq=6
Length = 1232
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 cgcgtctgcgtctgcgt 183
|||||||||||||||||
Sbjct: 714 cgcgtctgcgtctgcgt 698
>PTA.sd.599.C1 nseq=13
Length = 2742
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 249 ctcctatagatttgtt 264
||||||||||||||||
Sbjct: 1188 ctcctatagatttgtt 1203
>PTA.sd.5240.C1 nseq=2
Length = 1295
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 252 ctatagatttgttaca 267
||||||||||||||||
Sbjct: 1063 ctatagatttgttaca 1078
>PTA.sd.4487.C1 nseq=35
Length = 1839
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 168 gcgtctgcgtctgcgt 183
||||||||||||||||
Sbjct: 666 gcgtctgcgtctgcgt 681
>PTA.sd.2500.C1 nseq=5
Length = 1492
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 209 gtggagttaaatcact 224
||||||||||||||||
Sbjct: 562 gtggagttaaatcact 547
>PTA.sd.17207.C1 nseq=7
Length = 1570
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 142 ttcagccaaatcctca 157
||||||||||||||||
Sbjct: 1451 ttcagccaaatcctca 1436
>PTA.sd.17047.C1 nseq=12
Length = 1543
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 5 agatggtaaagacaaa 20
||||||||||||||||
Sbjct: 186 agatggtaaagacaaa 171
>PTA.sd.11476.C1 nseq=2
Length = 634
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 198 gcgtttccgcagtgga 213
||||||||||||||||
Sbjct: 7 gcgtttccgcagtgga 22
>At5g18880.F
Length = 888
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 12 aaagacaaaagacgat 27
||||||||||||||||
Sbjct: 818 aaagacaaaagacgat 803
>PTA.sd.8398.C1 nseq=6
Length = 1477
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 131 tgacgttttccttca 145
|||||||||||||||
Sbjct: 1000 tgacgttttccttca 986
>PTA.sd.832.C1 nseq=2
Length = 1038
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 54 aacatccctgacgca 68
|||||||||||||||
Sbjct: 601 aacatccctgacgca 615
>PTA.sd.7434.C1 nseq=10
Length = 1659
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 175 cgtctgcgtctagct 189
|||||||||||||||
Sbjct: 661 cgtctgcgtctagct 647
>PTA.sd.6945.C1 nseq=9
Length = 1105
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 119 agccaattcttttga 133
|||||||||||||||
Sbjct: 885 agccaattcttttga 899
>PTA.sd.4169.C1 nseq=28
Length = 1198
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 119 agccaattcttttga 133
|||||||||||||||
Sbjct: 801 agccaattcttttga 787
>PTA.sd.2597.C1 nseq=30
Length = 1254
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 ccttcagccaaatcc 154
|||||||||||||||
Sbjct: 734 ccttcagccaaatcc 720
>PTA.sd.2095.C1 nseq=5
Length = 694
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 141 cttcagccaaatcct 155
|||||||||||||||
Sbjct: 305 cttcagccaaatcct 291
>PTA.sd.17906.C1 nseq=2
Length = 3911
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 ctcctactccagcca 123
|||||||||||||||
Sbjct: 2854 ctcctactccagcca 2840
>PTA.sd.17721.C1 nseq=20
Length = 935
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 118 cagccaattcttttg 132
|||||||||||||||
Sbjct: 401 cagccaattcttttg 387
>PTA.sd.17339.C1 nseq=5
Length = 2385
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 200 gtttccgcagtggag 214
|||||||||||||||
Sbjct: 460 gtttccgcagtggag 474
>PTA.sd.15752.C1 nseq=2
Length = 1084
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 258 atttgttacatacat 272
|||||||||||||||
Sbjct: 480 atttgttacatacat 494
>PTA.sd.15677.C1 nseq=11
Length = 2220
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 10 gtaaagacaaaagac 24
|||||||||||||||
Sbjct: 2144 gtaaagacaaaagac 2130
>PTA.sd.15013.C1 nseq=11
Length = 1268
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 114 actccagccaattct 128
|||||||||||||||
Sbjct: 732 actccagccaattct 718
>PTA.sd.14241.C1 nseq=5
Length = 1329
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 143 tcagccaaatcctca 157
|||||||||||||||
Sbjct: 501 tcagccaaatcctca 487
>PTA.sd.12975.C1 nseq=14
Length = 1453
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 124 attcttttgacgttt 138
|||||||||||||||
Sbjct: 645 attcttttgacgttt 659
>PTA.sd.12348.C1 nseq=3
Length = 2413
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 cagccaaatcctcat 158
|||||||||||||||
Sbjct: 1552 cagccaaatcctcat 1538
>PTA.sd.12220.C1 nseq=12
Length = 1030
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 168 gcgtctgcgtctgcgtcta 186
|||||||||||| ||||||
Sbjct: 281 gcgtctgcgtctacgtcta 299
>PTA.sd.10723.C1 nseq=5
Length = 1788
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 256 agatttgttacatac 270
|||||||||||||||
Sbjct: 241 agatttgttacatac 227
>PTA.sd.10579.C1 nseq=4
Length = 2260
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 114 actccagccaattct 128
|||||||||||||||
Sbjct: 1178 actccagccaattct 1164
>PTA.sd.10532.C1 nseq=7
Length = 4828
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 129 tttgacgttttcctt 143
|||||||||||||||
Sbjct: 1285 tttgacgttttcctt 1271
>At5g60060.F
Length = 1125
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 ccttcagccaaatcc 154
|||||||||||||||
Sbjct: 737 ccttcagccaaatcc 723
>At5g51350.F
Length = 2688
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 tgttaacatccctga 64
|||||||||||||||
Sbjct: 1590 tgttaacatccctga 1576
>At5g48200.F
Length = 651
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 16 acaaaagacgatcaa 30
|||||||||||||||
Sbjct: 148 acaaaagacgatcaa 162
>At3g56870.F
Length = 2013
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 239 agtttgtggtctcct 253
|||||||||||||||
Sbjct: 1169 agtttgtggtctcct 1155
>At1g67380.F
Length = 1080
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 206 gcagtggagttaaat 220
|||||||||||||||
Sbjct: 461 gcagtggagttaaat 447
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)