BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_01044
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.14792.C1 nseq=16 595 e-170
At5g13740.F PTA.sd.14791.singlet 50 9e-06
At4g36470.F 34 0.56
PTA.sd.3002.C1 nseq=2 32 2.2
PTA.sd.15729.C1 nseq=9 32 2.2
PTA.sd.1259.C1 nseq=12 32 2.2
At2g15100.F 32 2.2
PTA.sd.8141.C1 nseq=18 30 8.7
PTA.sd.5029.C1 nseq=5 30 8.7
PTA.sd.429.C1 nseq=5 30 8.7
PTA.sd.4284.C1 nseq=8 30 8.7
PTA.sd.2713.C1 nseq=10 30 8.7
PTA.sd.17280.C1 nseq=3 30 8.7
PTA.sd.16936.C1 nseq=13 30 8.7
PTA.sd.15944.C1 nseq=7 30 8.7
>PTA.sd.14792.C1 nseq=16
Length = 1844
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 ctccttatctttcagctttcgctctactcttacgcagagaggcttttaggacctatcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 ctccttatctttcagctttcgctctactcttacgcagagaggcttttaggacctatcata 1161
Query: 61 gttacacgtatatctgggagcctagcaatggtcgtcttatcatgttacccactaatagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1162 gttacacgtatatctgggagcctagcaatggtcgtcttatcatgttacccactaatagca 1221
Query: 121 aagttatctggtttagcccttaccgtgactgtaacttctgcatccgtagcaaagagtgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1222 aagttatctggtttagcccttaccgtgactgtaacttctgcatccgtagcaaagagtgtt 1281
Query: 181 ttaggtacttctgctataactggattattcatccttcaaaacaaggctgtgagacaagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 ttaggtacttctgctataactggattattcatccttcaaaacaaggctgtgagacaagac 1341
Query: 241 caaagaggagcagctaatggaattgccatgacagcgatgtctcttttcaaagccataggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 caaagaggagcagctaatggaattgccatgacagcgatgtctcttttcaaagccataggt 1401
>At5g13740.F PTA.sd.14791.singlet
Length = 1548
Score = 50.1 bits (25), Expect = 9e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 240 ccaaagaggagcagctaatggaattgccatgacagcgatgtctct 284
||||||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 1296 ccaaagaggggcggctaatggaatagctatgactgcgatgtctct 1340
>At4g36470.F
Length = 1116
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 231 gagacaagaccaaagag 247
|||||||||||||||||
Sbjct: 145 gagacaagaccaaagag 161
>PTA.sd.3002.C1 nseq=2
Length = 1165
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 232 agacaagaccaaagag 247
||||||||||||||||
Sbjct: 603 agacaagaccaaagag 618
>PTA.sd.15729.C1 nseq=9
Length = 1871
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 222 caaggctgtgagacaa 237
||||||||||||||||
Sbjct: 515 caaggctgtgagacaa 500
>PTA.sd.1259.C1 nseq=12
Length = 2019
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 253 gctaatggaattgccatgac 272
|||||||| |||||||||||
Sbjct: 685 gctaatggtattgccatgac 704
>At2g15100.F
Length = 3990
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 18 ttcgctctactcttac 33
||||||||||||||||
Sbjct: 2044 ttcgctctactcttac 2029
>PTA.sd.8141.C1 nseq=18
Length = 724
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 168 agcaaagagtgtttt 182
|||||||||||||||
Sbjct: 23 agcaaagagtgtttt 9
>PTA.sd.5029.C1 nseq=5
Length = 1336
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 233 gacaagaccaaagag 247
|||||||||||||||
Sbjct: 1151 gacaagaccaaagag 1137
>PTA.sd.429.C1 nseq=5
Length = 1135
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 88 atggtcgtcttatcatgtt 106
|||||||||||| ||||||
Sbjct: 43 atggtcgtcttaccatgtt 25
>PTA.sd.4284.C1 nseq=8
Length = 2151
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 tccttcaaaacaagg 226
|||||||||||||||
Sbjct: 145 tccttcaaaacaagg 131
>PTA.sd.2713.C1 nseq=10
Length = 1669
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 tctgggagcctagca 87
|||||||||||||||
Sbjct: 969 tctgggagcctagca 955
>PTA.sd.17280.C1 nseq=3
Length = 1163
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 ttcagctttcgctct 25
|||||||||||||||
Sbjct: 189 ttcagctttcgctct 203
>PTA.sd.16936.C1 nseq=13
Length = 1708
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 244 agaggagcagctaatggaa 262
|||||| ||||||||||||
Sbjct: 545 agaggaacagctaatggaa 527
>PTA.sd.15944.C1 nseq=7
Length = 1196
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 6 tatctttcagctttc 20
|||||||||||||||
Sbjct: 1011 tatctttcagctttc 997
>PTA.sd.15208.C1 nseq=8
Length = 1162
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 83 tagcaatggtcgtct 97
|||||||||||||||
Sbjct: 825 tagcaatggtcgtct 839
>PTA.sd.14063.C1 nseq=7
Length = 2214
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 actgtaacttctgca 162
|||||||||||||||
Sbjct: 967 actgtaacttctgca 953
>PTA.sd.12950.C1 nseq=7
Length = 1669
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 120 aaagttatctggttt 134
|||||||||||||||
Sbjct: 479 aaagttatctggttt 465
>PTA.sd.12787.C1 nseq=5
Length = 1802
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 210 catccttcaaaacaa 224
|||||||||||||||
Sbjct: 326 catccttcaaaacaa 312
>PTA.sd.12675.C1 nseq=5
Length = 1489
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 232 agacaagaccaaagaggag 250
|||||||||||| ||||||
Sbjct: 1136 agacaagaccaatgaggag 1118
>PTA.sd.12128.C1 nseq=3
Length = 1502
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 232 agacaagaccaaaga 246
|||||||||||||||
Sbjct: 1464 agacaagaccaaaga 1450
>PTA.sd.10387.C1 nseq=6
Length = 2005
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 280 tctcttttcaaagcc 294
|||||||||||||||
Sbjct: 652 tctcttttcaaagcc 638
>PTA.sd.10008.C1 nseq=4
Length = 1139
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 tgagacaagaccaaa 244
|||||||||||||||
Sbjct: 568 tgagacaagaccaaa 582
>At5g28810.F
Length = 1683
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 186 tacttctgctataac 200
|||||||||||||||
Sbjct: 930 tacttctgctataac 916
>At4g03990.F
Length = 1032
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 attcatccttcaaaa 221
|||||||||||||||
Sbjct: 83 attcatccttcaaaa 97
>At4g03860.F
Length = 2238
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 243 aagaggagcagctaa 257
|||||||||||||||
Sbjct: 1867 aagaggagcagctaa 1853
>At3g51170.F
Length = 1041
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 cccttaccgtgactg 151
|||||||||||||||
Sbjct: 255 cccttaccgtgactg 269
>At3g30450.F
Length = 2403
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 attcatccttcaaaa 221
|||||||||||||||
Sbjct: 83 attcatccttcaaaa 97
>At3g16890.F
Length = 1980
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 120 aaagttatctggttt 134
|||||||||||||||
Sbjct: 1803 aaagttatctggttt 1789
>At3g14030.F
Length = 603
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 caaagaggagcagct 255
|||||||||||||||
Sbjct: 234 caaagaggagcagct 248
>At2g15380.F
Length = 3936
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 96 cttatcatgttaccc 110
|||||||||||||||
Sbjct: 2206 cttatcatgttaccc 2220
>At2g15200.F
Length = 1953
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 attcatccttcaaaa 221
|||||||||||||||
Sbjct: 83 attcatccttcaaaa 97
>At2g14150.F
Length = 2352
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 attcatccttcaaaa 221
|||||||||||||||
Sbjct: 83 attcatccttcaaaa 97
>At2g07070.F
Length = 417
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 232 agacaagaccaaaga 246
|||||||||||||||
Sbjct: 402 agacaagaccaaaga 388
>At2g04970.F
Length = 1374
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 attcatccttcaaaa 221
|||||||||||||||
Sbjct: 83 attcatccttcaaaa 97
>At1g55410.F
Length = 2019
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 164 ccgtagcaaagagtg 178
|||||||||||||||
Sbjct: 1700 ccgtagcaaagagtg 1686
>At1g32830.F
Length = 2124
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 attcatccttcaaaa 221
|||||||||||||||
Sbjct: 83 attcatccttcaaaa 97
>At1g17540.F
Length = 2223
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 tcatccttcaaaaca 223
|||||||||||||||
Sbjct: 546 tcatccttcaaaaca 560
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)