BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00975
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.14740.C1 nseq=23 595 e-170
At1g21570.F PTA.sd.1577.singlet 34 0.56
PTA.sd.7972.C1 nseq=15 34 0.56
PTA.sd.68.C1 nseq=5 34 0.56
PTA.sd.3295.C1 nseq=17 32 2.2
PTA.sd.17353.C1 nseq=45 32 2.2
PTA.sd.15066.C1 nseq=6 32 2.2
PTA.sd.14879.C1 nseq=4 32 2.2
PTA.sd.14464.C1 nseq=6 32 2.2
PTA.sd.10490.C1 nseq=2 32 2.2
PTA.sd.10221.C1 nseq=22 32 2.2
At5g16170.F 32 2.2
At3g49450.F 32 2.2
At1g29600.F 32 2.2
PTA.sd.9446.C1 nseq=8 30 8.7
>PTA.sd.14740.C1 nseq=23
Length = 1009
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 acacacaaggtgtatttcgatataagtgttggcaatccagtggggaagttagctgggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 acacacaaggtgtatttcgatataagtgttggcaatccagtggggaagttagctgggagg 391
Query: 61 attgttattggattgtatggtgatgatgttccccaaactgtggagaactttcgtgctcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 attgttattggattgtatggtgatgatgttccccaaactgtggagaactttcgtgctcta 451
Query: 121 tgcacaggtgaaaagggatttggctacaagggttctacattccatcgtgtcatcagagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgcacaggtgaaaagggatttggctacaagggttctacattccatcgtgtcatcagagat 511
Query: 181 ttcatgattcagggaggagactttgagaagggcaatggaactggaggtaaaagtgtatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttcatgattcagggaggagactttgagaagggcaatggaactggaggtaaaagtgtatat 571
Query: 241 ggccgtacattcaaggatgagaatttcaagttatcccatgtcggaccaggagttctaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ggccgtacattcaaggatgagaatttcaagttatcccatgtcggaccaggagttctaagt 631
>At1g21570.F PTA.sd.1577.singlet
Length = 1977
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 247 acattcaaggatgagaa 263
|||||||||||||||||
Sbjct: 1483 acattcaaggatgagaa 1499
>PTA.sd.7972.C1 nseq=15
Length = 1032
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 64 gttattggattgtatgg 80
|||||||||||||||||
Sbjct: 977 gttattggattgtatgg 993
>PTA.sd.68.C1 nseq=5
Length = 704
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 181 ttcatgattcagggaggagac 201
||||||||||| |||||||||
Sbjct: 203 ttcatgattcaaggaggagac 223
>PTA.sd.3295.C1 nseq=17
Length = 1614
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 193 ggaggagactttgaga 208
||||||||||||||||
Sbjct: 1082 ggaggagactttgaga 1097
>PTA.sd.17353.C1 nseq=45
Length = 1687
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 212 gcaatggaactggagg 227
||||||||||||||||
Sbjct: 523 gcaatggaactggagg 538
>PTA.sd.15066.C1 nseq=6
Length = 1198
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 189 tcagggaggagacttt 204
||||||||||||||||
Sbjct: 809 tcagggaggagacttt 794
>PTA.sd.14879.C1 nseq=4
Length = 1862
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 173 tcagagatttcatgat 188
||||||||||||||||
Sbjct: 1536 tcagagatttcatgat 1551
>PTA.sd.14464.C1 nseq=6
Length = 1649
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 70 ggattgtatggtgatg 85
||||||||||||||||
Sbjct: 811 ggattgtatggtgatg 796
>PTA.sd.10490.C1 nseq=2
Length = 794
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 181 ttcatgattcagggaggaga 200
|||||||||||||| |||||
Sbjct: 389 ttcatgattcagggtggaga 408
>PTA.sd.10221.C1 nseq=22
Length = 862
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 69 tggattgtatggtgatgatg 88
||||| ||||||||||||||
Sbjct: 700 tggatggtatggtgatgatg 719
>At5g16170.F
Length = 990
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 81 tgatgatgttccccaa 96
||||||||||||||||
Sbjct: 354 tgatgatgttccccaa 339
>At3g49450.F
Length = 1194
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 253 aaggatgagaatttca 268
||||||||||||||||
Sbjct: 778 aaggatgagaatttca 793
>At1g29600.F
Length = 864
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 184 atgattcagggaggag 199
||||||||||||||||
Sbjct: 626 atgattcagggaggag 641
>PTA.sd.9446.C1 nseq=8
Length = 2751
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 209 agggcaatggaactg 223
|||||||||||||||
Sbjct: 1388 agggcaatggaactg 1374
>PTA.sd.9265.C1 nseq=6
Length = 1571
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 gcaatggaactggag 226
|||||||||||||||
Sbjct: 1140 gcaatggaactggag 1154
>PTA.sd.9100.C1 nseq=8
Length = 1003
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 gcaatggaactggag 226
|||||||||||||||
Sbjct: 730 gcaatggaactggag 716
>PTA.sd.6956.C1 nseq=3
Length = 1412
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 211 ggcaatggaactgga 225
|||||||||||||||
Sbjct: 145 ggcaatggaactgga 159
>PTA.sd.4943.C1 nseq=6
Length = 1876
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 79 ggtgatgatgttccccaaa 97
|||||| ||||||||||||
Sbjct: 752 ggtgatcatgttccccaaa 734
>PTA.sd.2977.C1 nseq=11
Length = 1096
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 197 gagactttgagaagg 211
|||||||||||||||
Sbjct: 1088 gagactttgagaagg 1074
>PTA.sd.2689.C1 nseq=25
Length = 2483
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 catcagagatttcat 185
|||||||||||||||
Sbjct: 1619 catcagagatttcat 1605
>PTA.sd.2550.C1 nseq=8
Length = 973
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 75 gtatggtgatgatgt 89
|||||||||||||||
Sbjct: 859 gtatggtgatgatgt 873
>PTA.sd.2515.C1 nseq=12
Length = 1747
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 gatgttccccaaact 99
|||||||||||||||
Sbjct: 539 gatgttccccaaact 553
>PTA.sd.1941.C1 nseq=3
Length = 4007
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 257 atgagaatttcaagt 271
|||||||||||||||
Sbjct: 1621 atgagaatttcaagt 1607
>PTA.sd.16746.C1 nseq=4
Length = 2648
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 218 gaactggaggtaaaa 232
|||||||||||||||
Sbjct: 588 gaactggaggtaaaa 602
>PTA.sd.16548.C1 nseq=7
Length = 1355
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 246 tacattcaaggatga 260
|||||||||||||||
Sbjct: 513 tacattcaaggatga 527
>PTA.sd.11619.C1 nseq=6
Length = 3466
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 77 atggtgatgatgttc 91
|||||||||||||||
Sbjct: 824 atggtgatgatgttc 810
>PTA.sd.11537.C1 nseq=5
Length = 560
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 281 tcggaccaggagttc 295
|||||||||||||||
Sbjct: 169 tcggaccaggagttc 183
>At5g59660.F
Length = 2529
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 256 gatgagaatttcaag 270
|||||||||||||||
Sbjct: 1825 gatgagaatttcaag 1839
>At5g56430.F
Length = 1083
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 gggaggagactttga 206
|||||||||||||||
Sbjct: 663 gggaggagactttga 677
>At5g45640.F
Length = 2142
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 tttgagaagggcaat 216
|||||||||||||||
Sbjct: 1539 tttgagaagggcaat 1525
>At5g27310.F
Length = 1113
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 ggagactttgagaag 210
|||||||||||||||
Sbjct: 207 ggagactttgagaag 221
>At4g07660.F
Length = 2175
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 251 tcaaggatgagaatt 265
|||||||||||||||
Sbjct: 2065 tcaaggatgagaatt 2079
>At4g07610.F
Length = 831
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 251 tcaaggatgagaatt 265
|||||||||||||||
Sbjct: 79 tcaaggatgagaatt 93
>At2g31650.F
Length = 1545
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 250 ttcaaggatgagaat 264
|||||||||||||||
Sbjct: 1201 ttcaaggatgagaat 1215
>At2g27780.F
Length = 1107
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 ggagactttgagaag 210
|||||||||||||||
Sbjct: 201 ggagactttgagaag 215
>At2g13640.F
Length = 1155
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 ggagactttgagaag 210
|||||||||||||||
Sbjct: 207 ggagactttgagaag 221
>At1g62935.F
Length = 531
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 tatggtgatgatgtt 90
|||||||||||||||
Sbjct: 421 tatggtgatgatgtt 435
>At1g27940.F
Length = 3738
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 tagctgggaggattg 64
|||||||||||||||
Sbjct: 1103 tagctgggaggattg 1117
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)