BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00905
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.7898.C1 nseq=12 595 e-170
At3g31960.F 34 0.56
PTA.sd.4646.C1 nseq=30 32 2.2
PTA.sd.13687.C1 nseq=2 32 2.2
At5g44970.F 32 2.2
At4g36470.F 32 2.2
At3g03850.F PTA.sd.7687.singlet 30 8.7
PTA.sd.9821.C1 nseq=6 30 8.7
PTA.sd.8851.C1 nseq=17 30 8.7
PTA.sd.8064.C2 nseq=2 30 8.7
PTA.sd.8023.C1 nseq=8 30 8.7
PTA.sd.7686.C1 nseq=4 30 8.7
PTA.sd.6445.C1 nseq=3 30 8.7
PTA.sd.5991.C1 nseq=3 30 8.7
PTA.sd.4071.C1 nseq=7 30 8.7
>PTA.sd.7898.C1 nseq=12
Length = 1555
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 aaaggtctcagatgaaggtggaggtatagcaagaagcggtcttcccagaatattcaccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 aaaggtctcagatgaaggtggaggtatagcaagaagcggtcttcccagaatattcaccta 1024
Query: 61 tctttacagcactgcaagaaacccgcttgaggaggatgtcgatttaggaatagctgatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 tctttacagcactgcaagaaacccgcttgaggaggatgtcgatttaggaatagctgatgt 1084
Query: 121 tcccgtgactatggctggatatggttatggtcttccaattagtcgcttgtatgctcgata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 tcccgtgactatggctggatatggttatggtcttccaattagtcgcttgtatgctcgata 1144
Query: 181 tttcggtggagatttgcagatcatatccatggaaggatatgggactgatgcatacttgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 tttcggtggagatttgcagatcatatccatggaaggatatgggactgatgcatacttgca 1204
Query: 241 cttgtctcgccttggagattcgcaagagcctttaccctgagaacatctctatgtcaggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 cttgtctcgccttggagattcgcaagagcctttaccctgagaacatctctatgtcaggca 1264
>At3g31960.F
Length = 354
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 138 gatatggttatggtctt 154
|||||||||||||||||
Sbjct: 330 gatatggttatggtctt 314
>PTA.sd.4646.C1 nseq=30
Length = 7386
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 11 gatgaaggtggaggta 26
||||||||||||||||
Sbjct: 6069 gatgaaggtggaggta 6084
>PTA.sd.13687.C1 nseq=2
Length = 1186
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 198 agatcatatccatgga 213
||||||||||||||||
Sbjct: 980 agatcatatccatgga 995
>At5g44970.F
Length = 1170
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 179 tatttcggtggagatt 194
||||||||||||||||
Sbjct: 525 tatttcggtggagatt 540
>At4g36470.F
Length = 1116
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 103 tttaggaatagctgat 118
||||||||||||||||
Sbjct: 162 tttaggaatagctgat 177
>At3g03850.F PTA.sd.7687.singlet
Length = 396
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 cactgcaagaaaccc 84
|||||||||||||||
Sbjct: 96 cactgcaagaaaccc 82
>PTA.sd.9821.C1 nseq=6
Length = 1307
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 101 gatttaggaatagctgatg 119
|||||||||||| ||||||
Sbjct: 109 gatttaggaatatctgatg 127
>PTA.sd.8851.C1 nseq=17
Length = 1517
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 254 ggagattcgcaagag 268
|||||||||||||||
Sbjct: 173 ggagattcgcaagag 187
>PTA.sd.8064.C2 nseq=2
Length = 1302
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 14 gaaggtggaggtatagcaa 32
||||| |||||||||||||
Sbjct: 64 gaaggaggaggtatagcaa 82
>PTA.sd.8023.C1 nseq=8
Length = 2109
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 102 atttaggaatagctg 116
|||||||||||||||
Sbjct: 1394 atttaggaatagctg 1408
>PTA.sd.7686.C1 nseq=4
Length = 607
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 cactgcaagaaaccc 84
|||||||||||||||
Sbjct: 167 cactgcaagaaaccc 153
>PTA.sd.6445.C1 nseq=3
Length = 1943
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 183 tcggtggagatttgc 197
|||||||||||||||
Sbjct: 791 tcggtggagatttgc 805
>PTA.sd.5991.C1 nseq=3
Length = 2907
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 tatccatggaaggat 218
|||||||||||||||
Sbjct: 1507 tatccatggaaggat 1493
>PTA.sd.4071.C1 nseq=7
Length = 2404
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 68 agcactgcaagaaac 82
|||||||||||||||
Sbjct: 997 agcactgcaagaaac 1011
>PTA.sd.3848.C1 nseq=3
Length = 2199
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gaggaggatgtcgat 103
|||||||||||||||
Sbjct: 1186 gaggaggatgtcgat 1200
>PTA.sd.3411.C1 nseq=8
Length = 1419
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 10 agatgaaggtggaggtata 28
|||||||||||||| ||||
Sbjct: 363 agatgaaggtggagctata 345
>PTA.sd.2129.C1 nseq=12
Length = 2878
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 aagaaacccgcttga 90
|||||||||||||||
Sbjct: 1137 aagaaacccgcttga 1123
>PTA.sd.17465.C1 nseq=24
Length = 2295
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 255 gagattcgcaagagc 269
|||||||||||||||
Sbjct: 1085 gagattcgcaagagc 1071
>PTA.sd.16480.C1 nseq=2
Length = 423
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 135 ctggatatggttatggtct 153
||||| |||||||||||||
Sbjct: 206 ctggacatggttatggtct 224
>PTA.sd.16142.C1 nseq=5
Length = 2367
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 114 ctgatgttcccgtgactat 132
|||||| ||||||||||||
Sbjct: 1036 ctgatgatcccgtgactat 1018
>PTA.sd.15119.C1 nseq=3
Length = 709
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 cactgcaagaaaccc 84
|||||||||||||||
Sbjct: 177 cactgcaagaaaccc 163
>PTA.sd.15118.C1 nseq=2
Length = 488
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 cactgcaagaaaccc 84
|||||||||||||||
Sbjct: 184 cactgcaagaaaccc 170
>PTA.sd.15115.C1 nseq=3
Length = 493
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 cactgcaagaaaccc 84
|||||||||||||||
Sbjct: 187 cactgcaagaaaccc 173
>PTA.sd.14882.C1 nseq=4
Length = 2647
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 135 ctggatatggttatggtct 153
||||| |||||||||||||
Sbjct: 241 ctggaaatggttatggtct 259
>PTA.sd.13761.C1 nseq=3
Length = 437
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 70 cactgcaagaaaccc 84
|||||||||||||||
Sbjct: 275 cactgcaagaaaccc 289
>PTA.sd.13757.C1 nseq=2
Length = 7123
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 gatgaaggtggaggt 25
|||||||||||||||
Sbjct: 5985 gatgaaggtggaggt 5999
>PTA.sd.12927.C1 nseq=5
Length = 1494
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 agcaagaagcggtct 42
|||||||||||||||
Sbjct: 122 agcaagaagcggtct 136
>PTA.sd.11997.C1 nseq=8
Length = 1964
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 90 aggaggatgtcgatt 104
|||||||||||||||
Sbjct: 365 aggaggatgtcgatt 379
>PTA.sd.11558.C1 nseq=17
Length = 3639
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 274 accctgagaacatct 288
|||||||||||||||
Sbjct: 2870 accctgagaacatct 2856
>At5g43240.F
Length = 1449
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 21 gaggtatagcaagaa 35
|||||||||||||||
Sbjct: 907 gaggtatagcaagaa 893
>At5g28600.F
Length = 2136
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 cttgaggaggatgtc 100
|||||||||||||||
Sbjct: 244 cttgaggaggatgtc 258
>At3g47750.F
Length = 2688
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 tggagatttgcagat 201
|||||||||||||||
Sbjct: 1189 tggagatttgcagat 1175
>At3g44910.F
Length = 2118
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 276 cctgagaacatctct 290
|||||||||||||||
Sbjct: 1228 cctgagaacatctct 1242
>At3g43080.F
Length = 2184
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 26 atagcaagaagcggt 40
|||||||||||||||
Sbjct: 496 atagcaagaagcggt 510
>At3g31940.F
Length = 627
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 86 cttgaggaggatgtcgatt 104
|||| ||||||||||||||
Sbjct: 58 cttgtggaggatgtcgatt 76
>At3g03820.F
Length = 291
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 cactgcaagaaaccc 84
|||||||||||||||
Sbjct: 102 cactgcaagaaaccc 88
>At1g19290.F
Length = 2157
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 267 agcctttaccctgag 281
|||||||||||||||
Sbjct: 1761 agcctttaccctgag 1775
>At1g15990.F
Length = 2130
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 67 cagcactgcaagaaa 81
|||||||||||||||
Sbjct: 522 cagcactgcaagaaa 508
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)