BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_00881
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.15028.C1 nseq=15 595 e-170
At3g24680.F 36 0.14
PTA.sd.5723.C1 nseq=3 32 2.2
PTA.sd.3634.C1 nseq=3 32 2.2
PTA.sd.14516.C1 nseq=105 32 2.2
PTA.sd.11104.C1 nseq=6 32 2.2
At5g41780.F 32 2.2
At5g35960.F 32 2.2
At4g11250.F 32 2.2
At2g19100.F 32 2.2
At2g12600.F 32 2.2
At5g04220.F PTA.sd.14111.singlet 30 8.7
At4g27340.F PTA.sd.12814.singlet 30 8.7
At4g26540.F PTA.sd.12749.singlet 30 8.7
PTA.sd.9293.C1 nseq=2 30 8.7
>PTA.sd.15028.C1 nseq=15
Length = 1570
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 tccacaagctttacgatgtgtattggaaggagaatcttcatgagtttcgcgagaaatgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tccacaagctttacgatgtgtattggaaggagaatcttcatgagtttcgcgagaaatgtc 443
Query: 61 ctggtgttcctgtaatcgatttgcctgaggctatcgagcgattgcacaatagggtttcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctggtgttcctgtaatcgatttgcctgaggctatcgagcgattgcacaatagggtttcga 503
Query: 121 tgcttgaggtgataactcaattgaggtttcctgtttcagatagcgagagatttggtgtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcttgaggtgataactcaattgaggtttcctgtttcagatagcgagagatttggtgtcc 563
Query: 181 cggagcaagttgttgttatggattcgagcgtcttgagcggtggaggagctttaggggagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cggagcaagttgttgttatggattcgagcgtcttgagcggtggaggagctttaggggagc 623
Query: 241 ttaagtttccggtgattgctaagccgttggatgctgatgggagtgctaaatctcataaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttaagtttccggtgattgctaagccgttggatgctgatgggagtgctaaatctcataaga 683
>At3g24680.F
Length = 1464
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 218 cggtggaggagctttagg 235
||||||||||||||||||
Sbjct: 732 cggtggaggagctttagg 715
>PTA.sd.5723.C1 nseq=3
Length = 2128
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 20 gtattggaaggagaat 35
||||||||||||||||
Sbjct: 870 gtattggaaggagaat 885
>PTA.sd.3634.C1 nseq=3
Length = 4500
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 38 tcatgagtttcgcgag 53
||||||||||||||||
Sbjct: 751 tcatgagtttcgcgag 766
>PTA.sd.14516.C1 nseq=105
Length = 1631
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 30 gagaatcttcatgagt 45
||||||||||||||||
Sbjct: 688 gagaatcttcatgagt 673
>PTA.sd.11104.C1 nseq=6
Length = 1811
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 28 aggagaatcttcatga 43
||||||||||||||||
Sbjct: 420 aggagaatcttcatga 435
>At5g41780.F
Length = 1614
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 146 gtttcctgtttcagat 161
||||||||||||||||
Sbjct: 377 gtttcctgtttcagat 362
>At5g35960.F
Length = 1290
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 125 tgaggtgataactcaa 140
||||||||||||||||
Sbjct: 635 tgaggtgataactcaa 620
>At4g11250.F
Length = 990
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 33 aatcttcatgagtttcgcgagaaa 56
|||||||||||||| | |||||||
Sbjct: 226 aatcttcatgagttcctcgagaaa 249
>At2g19100.F
Length = 4344
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 233 aggggagcttaagttt 248
||||||||||||||||
Sbjct: 1038 aggggagcttaagttt 1053
>At2g12600.F
Length = 1617
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 170 atttggtgtcccggagcaag 189
||||| ||||||||||||||
Sbjct: 550 atttgatgtcccggagcaag 531
>At5g04220.F PTA.sd.14111.singlet
Length = 1623
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 191 tgttgttatggattc 205
|||||||||||||||
Sbjct: 1110 tgttgttatggattc 1124
>At4g27340.F PTA.sd.12814.singlet
Length = 1689
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 ttgcctgaggctatc 95
|||||||||||||||
Sbjct: 868 ttgcctgaggctatc 882
>At4g26540.F PTA.sd.12749.singlet
Length = 2781
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 241 ttaagtttccggtga 255
|||||||||||||||
Sbjct: 1840 ttaagtttccggtga 1826
>PTA.sd.9293.C1 nseq=2
Length = 1158
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 246 tttccggtgattgct 260
|||||||||||||||
Sbjct: 381 tttccggtgattgct 367
>PTA.sd.9283.C1 nseq=3
Length = 2212
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 183 gagcaagttgttgtt 197
|||||||||||||||
Sbjct: 681 gagcaagttgttgtt 695
>PTA.sd.6759.C1 nseq=14
Length = 1402
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 266 gttggatgctgatgg 280
|||||||||||||||
Sbjct: 588 gttggatgctgatgg 602
>PTA.sd.5891.C1 nseq=4
Length = 1561
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 gagagatttggtgtc 179
|||||||||||||||
Sbjct: 321 gagagatttggtgtc 335
>PTA.sd.5677.C1 nseq=7
Length = 2312
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 tgagcggtggaggag 228
|||||||||||||||
Sbjct: 1320 tgagcggtggaggag 1334
>PTA.sd.5276.C1 nseq=2
Length = 3564
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 24 tggaaggagaatctt 38
|||||||||||||||
Sbjct: 1020 tggaaggagaatctt 1034
>PTA.sd.5199.C1 nseq=3
Length = 1447
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 agggtttcgatgctt 125
|||||||||||||||
Sbjct: 163 agggtttcgatgctt 177
>PTA.sd.4291.C1 nseq=9
Length = 2677
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 20 gtattggaaggagaa 34
|||||||||||||||
Sbjct: 1585 gtattggaaggagaa 1571
>PTA.sd.4033.C1 nseq=10
Length = 974
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 261 aagccgttggatgct 275
|||||||||||||||
Sbjct: 702 aagccgttggatgct 716
>PTA.sd.375.C1 nseq=4
Length = 810
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 243 aagtttccggtgatt 257
|||||||||||||||
Sbjct: 415 aagtttccggtgatt 401
>PTA.sd.342.C1 nseq=10
Length = 2888
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 189 gttgttgttatggat 203
|||||||||||||||
Sbjct: 2163 gttgttgttatggat 2177
>PTA.sd.2281.C1 nseq=7
Length = 1923
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 189 gttgttgttatggat 203
|||||||||||||||
Sbjct: 1473 gttgttgttatggat 1487
>PTA.sd.2059.C1 nseq=4
Length = 659
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 34 atcttcatgagtttc 48
|||||||||||||||
Sbjct: 120 atcttcatgagtttc 106
>PTA.sd.17489.C1 nseq=7
Length = 2135
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 ttatggattcgagcg 210
|||||||||||||||
Sbjct: 670 ttatggattcgagcg 684
>PTA.sd.17275.C1 nseq=12
Length = 2348
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 225 ggagctttaggggag 239
|||||||||||||||
Sbjct: 2076 ggagctttaggggag 2090
>PTA.sd.15522.C1 nseq=9
Length = 2463
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 219 ggtggaggagcttta 233
|||||||||||||||
Sbjct: 2099 ggtggaggagcttta 2113
>PTA.sd.14776.C1 nseq=7
Length = 1627
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 tgaggtgataactca 139
|||||||||||||||
Sbjct: 892 tgaggtgataactca 906
>PTA.sd.13496.C1 nseq=8
Length = 1667
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 agggtttcgatgctt 125
|||||||||||||||
Sbjct: 217 agggtttcgatgctt 231
>PTA.sd.12464.C1 nseq=8
Length = 1779
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 cgagcgattgcacaa 109
|||||||||||||||
Sbjct: 1343 cgagcgattgcacaa 1357
>PTA.sd.11291.C1 nseq=21
Length = 1751
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 251 ggtgattgctaagcc 265
|||||||||||||||
Sbjct: 1096 ggtgattgctaagcc 1110
>PTA.sd.10767.C1 nseq=3
Length = 1992
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 189 gttgttgttatggat 203
|||||||||||||||
Sbjct: 1282 gttgttgttatggat 1296
>orF109b.F
Length = 330
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 ggagcaagttgttgt 196
|||||||||||||||
Sbjct: 54 ggagcaagttgttgt 68
>At5g65330.F
Length = 1026
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 33 aatcttcatgagtttcgcgagaa 55
|||||||||||||| | ||||||
Sbjct: 229 aatcttcatgagttcctcgagaa 251
>At4g14460.F
Length = 4470
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 aatcttcatgagttt 47
|||||||||||||||
Sbjct: 3432 aatcttcatgagttt 3446
>At4g09710.F
Length = 3825
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 21 tattggaaggagaat 35
|||||||||||||||
Sbjct: 109 tattggaaggagaat 123
>At4g08450.F
Length = 3705
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 161 tagcgagagatttgg 175
|||||||||||||||
Sbjct: 1959 tagcgagagatttgg 1945
>At3g61230.F
Length = 636
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 24 tggaaggagaatctt 38
|||||||||||||||
Sbjct: 359 tggaaggagaatctt 373
>At3g55590.F
Length = 1095
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 188 agttgttgttatgga 202
|||||||||||||||
Sbjct: 447 agttgttgttatgga 461
>At2g07685.F
Length = 330
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 ggagcaagttgttgt 196
|||||||||||||||
Sbjct: 54 ggagcaagttgttgt 68
>At1g05930.F
Length = 1029
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 119 gatgcttgaggtgat 133
|||||||||||||||
Sbjct: 405 gatgcttgaggtgat 419
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)